[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 924 items for (author: baker & m)

EMDB-74629:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-74630:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrs:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrt:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-72513:
LONP1 C3-state
Method: single particle / : Mindrebo JT, Lander GC

EMDB-72514:
LONP1 C2-state
Method: single particle / : Mindrebo JT, Lander GC

EMDB-72515:
LONP1 C2-state
Method: single particle / : Mindrebo JT, Lander GC

EMDB-72516:
LONP1 Intermediate 3
Method: single particle / : Mindrebo JT, Lander GC

EMDB-72517:
Open form of LONP1, LONP1-OFF
Method: single particle / : Mindrebo JT, Lander GC

EMDB-72518:
LONP1 C3-Like State
Method: single particle / : Mindrebo JT, Lander GC

EMDB-76249:
Apo-IP3R2 Local Refinement of Ligand Binding Domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76250:
Apo-IP3R2 Local Refinement of ARM1-HD Domains
Method: single particle / : Serysehva II, Baker MR, Fan G

EMDB-76251:
Apo-IP3R2 Local Refinement of ARM2 Domain
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76252:
Apo-IP3R2 Local Refinement of ARM3-ILD-LNK domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76253:
Apo-IP3R2 Local Refinement of TM domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76254:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of Ligand Binding Domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76255:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of ARM1-HD domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76256:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of TM domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76257:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of ARM2 domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76258:
IP3R2 (+IP3/Ca2+/ATP) Local Refinement of ARM3-ILD-LNK domains
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76259:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptors (IP3R2) in the Apo-state (composite map)
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76260:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptors (IP3R2) in the Apo-state
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-76262:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptor (IP3R2)in the presence of IP3/Ca2+/ATP (Composite map)
Method: single particle / : Serysehva II, Baker MR, Fan G

EMDB-76264:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptor (IP3R2) in the presence of IP3/Ca2+/ATP
Method: single particle / : Serysheva II, Baker MR, Fan G

PDB-12ad:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptors (IP3R2) in the Apo-state
Method: single particle / : Serysheva II, Baker MR, Fan G

PDB-12ai:
Structure of mammalian Type 2 Inositol 1,4,5-trisphosphate receptor (IP3R2) in the presence of IP3/Ca2+/ATP
Method: single particle / : Serysheva II, Baker MR, Fan G

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-72769:
RSV-F SC-DM bound to a designed protein minibinder, cb13
Method: single particle / : Borst AJ, Skotheim R

PDB-9ycf:
RSV-F SC-DM bound to a designed protein minibinder, cb13
Method: single particle / : Borst AJ, Skotheim R

EMDB-70890:
C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Weidle C, Carr KD, Alexis C, Borst AJ

EMDB-70787:
Designed one-component T=3 quasisymmetric protein nanocage
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70792:
Designed one-component T=3 quasisymmetric protein nanocage pentamer sub-particle region
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70797:
Designed one-component T=13 quasisymmetric protein nanocage pentamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70798:
Designed one-component T=13 quasisymmetric protein nanocage hexamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-75574:
gRNAde designed RNA molecule
Method: single particle / : Spellmon N, Haack DB, Joshi CK, Hingey J, Rudolfs B, Mancino A, Toor N, Yu Z, Das R

EMDB-75575:
MPNN-fixbb designed RNA molecule
Method: single particle / : Haack DB, Spellmon N, Favor AH, Kubaney A, Baker D, Rudolfs B, Hingey J, Mancino A, Yu Z, Toor N, Das R

EMDB-75584:
MPNN-RFdiff designed RNA molecule
Method: single particle / : Hingey J, Spellmon N, Favor AH, Kubaney A, Baker D, Haack DB, Rudolfs B, Mancino A, Yu Z, Toor N, Das R

EMDB-75648:
Struct2SeQ designed RNA molecule
Method: single particle / : Mancino A, Hingey J, He S, Haack DB, Rudolfs B, Spellmon N, Yu Z, Toor N, Das R

PDB-10zt:
gRNAde designed RNA molecule
Method: single particle / : Spellmon N, Haack DB, Joshi CK, Rudolfs B, Hingey J, Mancino A, Yu Z, Toor N, Das R

PDB-10zu:
MPNN-fixbb designed RNA molecule
Method: single particle / : Haack DB, Spellmon N, Favor AH, Kubaney A, Baker D, Rudolfs B, Hingey J, Mancino A, Yu Z, Toor N, Das R

PDB-11ag:
MPNN-RFdiff designed RNA molecule
Method: single particle / : Hingey J, Spellmon N, Favor AH, Kubaney A, Baker D, Haack DB, Rudolfs B, Mancino A, Yu Z, Toor N, Das R

PDB-11eh:
Struct2SeQ designed RNA molecule
Method: single particle / : Mancino A, Hingey J, He S, Haack DB, Rudolfs B, Spellmon N, Yu Z, Toor N, Das R

EMDB-70605:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

EMDB-70685:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

PDB-9om3:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

PDB-9op9:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more