[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 874 items for (author: aly & n)

EMDB-53315:
EM structure of Rec-controlled histidine kinase LvrB, BeF3-activated
Method: single particle / : Agustoni E, Mechaly A, Rizza JD, Beriashvili D, Pluhackova K, Isaikina P, Trajtenberg F, Muntener T, Wunder E, Ko A, Schirmer T, Buschiazzo A, Hiller S

EMDB-53316:
EM structure of Rec-controlled histidine kinase LvrB
Method: single particle / : Agustino E, Buschiazzo A, Hiller S, Beriashvili D

PDB-9qqw:
EM structure of Rec-controlled histidine kinase LvrB, BeF3-activated
Method: single particle / : Agustoni E, Mechaly A, Rizza JD, Beriashvili D, Pluhackova K, Isaikina P, Trajtenberg F, Muntener T, Wunder E, Ko A, Schirmer T, Buschiazzo A, Hiller S

EMDB-53029:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

PDB-9qdl:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

EMDB-74146:
Cryo-EM Structure of Human STAT2-USP18-ISG15 Complex
Method: single particle / : Huynh KW, Yamaguchi M

EMDB-71677:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-71678:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9pit:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9piv:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-70260:
Human MPC1-2 Complex
Method: single particle / : Qi X, Sun Y, Wang Y

EMDB-53030:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II WITH THE INHIBITOR BIXAFEN
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

PDB-9qdm:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II WITH THE INHIBITOR BIXAFEN
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

EMDB-72371:
Human Oct4 bound to nucleosome reconstituted with human histones and 182 bp human LIN28B sequence
Method: single particle / : Sinha KK, Halic M

EMDB-50743:
Cryo-EM structure of the adhesion GPCR ADGRV1 in complex with a nanobody
Method: single particle / : Achat Y, Prevost M, Mechaly A, Genera M, Colcombet JB, Bezault A, Winter JM, Ayme G, Venien-Bryan C, Wolff N

PDB-9fte:
Cryo-EM structure of the adhesion GPCR ADGRV1 in complex with a nanobody
Method: single particle / : Achat Y, Prevost M, Mechaly A, Genera M, Colcombet JB, Bezault A, Winter JM, Ayme G, Venien-Bryan C, Wolff N

EMDB-42978:
CryoEM structure of Ku homodimer in complex with hairpin DNA
Method: single particle / : Baral J, Rouiller I, Das AK

EMDB-43184:
CryoEM structure of Ku homodimer super-complex with linear DNA
Method: single particle / : Baral J, Rouiller I, Das AK

EMDB-43185:
CryoEM structure of Ku homodimer super-complex with hairpin DNA
Method: single particle / : Baral J, Rouiller I, Das AK

EMDB-43186:
CryoEM structure of Ku homodimer in complex with linear DNA
Method: single particle / : Baral J, Rouiller I, Das AK

PDB-8v53:
CryoEM structure of Ku homodimer in complex with hairpin DNA
Method: single particle / : Baral J, Rouiller I, Das AK

PDB-8vf2:
CryoEM structure of Ku homodimer super-complex with linear DNA
Method: single particle / : Baral J, Rouiller I, Das AK

PDB-8vf4:
CryoEM structure of Ku homodimer super-complex with hairpin DNA
Method: single particle / : Baral J, Rouiller I, Das AK

PDB-8vf5:
CryoEM structure of Ku homodimer in complex with linear DNA
Method: single particle / : Baral J, Rouiller I, Das AK

EMDB-48606:
CryoEM structure of extracellular domain of human HER2 complexed with two nano-bodies 27A05 and 47D05
Method: single particle / : Bruch EM, Rak A

EMDB-48615:
CryoEM structure of extracellular domain of human HER2 complexed with nano-bodies 29E09
Method: single particle / : Bruch EM, Rak A

PDB-9mte:
CryoEM structure of extracellular domain of human HER2 complexed with two nano-bodies 27A05 and 47D05
Method: single particle / : Bruch EM, Rak A

PDB-9mtx:
CryoEM structure of extracellular domain of human HER2 complexed with nano-bodies 29E09
Method: single particle / : Bruch EM, Rak A

EMDB-49646:
Magnesium ions-bound closed-state cryo-EM structure of human TRPV6 in cNW11 nanodiscs
Method: single particle / : Neuberger A, Sobolevsky AI

PDB-9nq9:
Magnesium ions-bound closed-state cryo-EM structure of human TRPV6 in cNW11 nanodiscs
Method: single particle / : Neuberger A, Sobolevsky AI

EMDB-53247:
Tau Paired Helical Filaments using PAD12 for seeding in primary mouse neurons
Method: helical / : Lovestam S, Scheres SHW

EMDB-53461:
Tau (297-391) assembled in the presence of CuCl2
Method: helical / : Lovestam S, Scheres SHW

EMDB-53462:
Tau(297-408 S396D S400D T403D S404D) head to head fold type 1
Method: helical / : Lovestam S, Scheres SHW

EMDB-53463:
Tau(297-391) filaments PHF fold
Method: helical / : Lovestam S, Scheres SHW

EMDB-53464:
Tau(297-408 S396D S400D T403D S404D) head to head fold type 2
Method: helical / : Lovestam S, Scheres SHW

EMDB-47203:
Hetero-hexameric Hsp70-Hsp40-DafA complex
Method: single particle / : Ibrahim Z, Kalodimos C

PDB-9dvi:
Hetero-hexameric Hsp70-Hsp40-DafA complex
Method: single particle / : Ibrahim Z, Kalodimos C

EMDB-19777:
M. tuberculosis gyrase holocomplex with 150 bp DNA and gepotidacin
Method: single particle / : Mechaly A, Gubellini F, Yab E, Willand N, Petrella S, Dreneau A, Gioia B, Piveteau C, Djaout K, Lecat E, Wehenkel AM, Alzari PM, Deprez B, Baulard A, Aubry A

PDB-8s7k:
M. tuberculosis gyrase holocomplex with 150 bp DNA and gepotidacin
Method: single particle / : Mechaly A, Gubellini F, Yab E, Willand N, Petrella S

EMDB-54692:
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating remdesivir
Method: single particle / : Oliva MF, Das K

EMDB-54693:
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating Remdesivir
Method: single particle / : Oliva MF, Das K

EMDB-54694:
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating ATP
Method: single particle / : Oliva MF, Das K

EMDB-54695:
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating ATP
Method: single particle / : Oliva MF, Das K

PDB-9sao:
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating remdesivir
Method: single particle / : Oliva MF, Das K

PDB-9sap:
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating Remdesivir
Method: single particle / : Oliva MF, Das K

PDB-9saq:
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating ATP
Method: single particle / : Oliva MF, Das K

PDB-9sar:
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating ATP
Method: single particle / : Oliva MF, Das K

EMDB-72266:
Cryo-EM structure of octameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Method: single particle / : Collins BM, Healy MD, Liu M, Cater RJ

EMDB-72267:
CryoEM structure of decameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Method: single particle / : Collins BM, Healy MD, Liu M, Cater RJ

PDB-9q6c:
Cryo-EM structure of octameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
Method: single particle / : Collins BM, Healy MD, Liu M, Cater RJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more