[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,756 items for (author: ali & m)

EMDB-70517:
Anthoceros agrestis Rubisco (8 RbcL and 8 RbcS1) head to head stacking.
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-70520:
A. agrestis Rubisco (8 RbcL 7 RbcS 1 RbcS-STAR)
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-62620:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q, Xia N

EMDB-65522:
Cryo-EM structure of a 1C4 SpyTag-SpyCatcher mi3 nanoparticle
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-65523:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9kwy:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9w14:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-54629:
Ternary cryo-EM structure of yeast ALG3 with Dol25-PP-GlcNAc2Man5, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54630:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man6, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54631:
Ternary cryo-EM structure of chicken ALG12 with Dol25-PP-GlcNAc2Man7, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-54632:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man8, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6r:
Ternary cryo-EM structure of yeast ALG3 with Dol25-PP-GlcNAc2Man5, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6s:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man6, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6t:
Ternary cryo-EM structure of chicken ALG12 with Dol25-PP-GlcNAc2Man7, Dol25-P-Man, and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

PDB-9s6u:
Ternary cryo-EM structure of human ALG9 with Dol25-PP-GlcNAc2Man8, Dol25-P-Man and Fab
Method: single particle / : Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP

EMDB-75890:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75895:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75896:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75898:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75899:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-54430:
Lectin/toxin 2 from Coprinopsis cinerea
Method: single particle / : Cordara G, Ali Ahmad A, Krengel U

EMDB-53884:
A53T alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53885:
A53T alpha-synuclein fibril - Type 2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53886:
Wild-type alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53887:
Wild-type alpha-synuclein fibril - Type 3-1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53888:
Wild-type alpha-synuclein fibril - Type 3-2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53889:
Wild-type alpha-synuclein fibril - Type 4
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53890:
Wild-type alpha-synuclein fibril - Type 5
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb3:
A53T alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb6:
A53T alpha-synuclein fibril - Type 2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb7:
Wild-type alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb8:
Wild-type alpha-synuclein fibril - Type 3-1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rb9:
Wild-type alpha-synuclein fibril - Type 3-2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rba:
Wild-type alpha-synuclein fibril - Type 4
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

PDB-9rbb:
Wild-type alpha-synuclein fibril - Type 5
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-75195:
S305I Frontotemporal Lobar Degeneration (FTLD) type I tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

EMDB-75196:
S305I Frontotemporal Lobar Degeneration (FTLD) type II tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

PDB-10ij:
S305I Frontotemporal Lobar Degeneration (FTLD) type I tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

PDB-10ik:
S305I Frontotemporal Lobar Degeneration (FTLD) type II tau filament
Method: helical / : Pan HS, Merz GE, Tse E, Southworth DR

EMDB-70486:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with taurochenodeoxycholic acid (TCDCA)
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-70487:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with methyl cholate
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-70488:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the closed CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-70489:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the open CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohc:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with taurochenodeoxycholic acid (TCDCA)
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohd:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with methyl cholate
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohe:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the closed CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohf:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the open CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-55442:
mouse hippocampal CA1-sr synapse tomogram: CA1-sr dataset 2
Method: electron tomography / : Glynn C, Smith JLR

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70084:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more