[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 782 items for (author: alexandra & t)

EMDB-54186:
TRPC5 apo cryoEM map in the presence of pluronic acid (PA), state 2
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54187:
Human TRPC5 in complex with (-) englerin A, full occupancy, state 1, on 290 nm gold foil holes (HexAuFoil)
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54188:
Human TRPC5 in complex with (-) englerin A, full occupancy, state 2, on 290 nm gold foil holes (HexAuFoil)
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54189:
Human TRPC5 in complex with (-) englerin A, full occupancy, intermediary desensitized state
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54193:
Human TRPC5 in complex with (-) englerin A, partial occupancy (2EA:2LIP stoichiometry) state 1
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54204:
Human TRPC5 in complex with (-) englerin A, mixed occupancy, state 1
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54218:
Human TRPC5 in complex with (-) englerin A, mixed occupancy_2, state 2
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54219:
Human TRPC5 in complex with (-) englerin A, mixed occupancy, state 2
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-54291:
Human TRPC5 in complex with (-) englerin A, partial occupancy (2EA:2LIP stoichiometry) state 2
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rrf:
TRPC5 apo cryoEM map in the presence of pluronic acid (PA), state 2
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rrm:
Human TRPC5 in complex with (-) englerin A, full occupancy, state 1, on 290 nm gold foil holes (HexAuFoil)
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rrn:
Human TRPC5 in complex with (-) englerin A, full occupancy, state 2, on 290 nm gold foil holes (HexAuFoil)
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rro:
Human TRPC5 in complex with (-) englerin A, full occupancy, intermediary desensitized state
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rrq:
Human TRPC5 in complex with (-) englerin A, partial occupancy (2EA:2LIP stoichiometry) state 1
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rru:
Human TRPC5 in complex with (-) englerin A, mixed occupancy, state 1
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rsg:
Human TRPC5 in complex with (-) englerin A, mixed occupancy_2, state 2
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rsh:
Human TRPC5 in complex with (-) englerin A, mixed occupancy, state 2
Method: single particle / : Porav AS, Bon RS, Muench S

PDB-9rvv:
Human TRPC5 in complex with (-) englerin A, partial occupancy (2EA:2LIP stoichiometry) state 2
Method: single particle / : Porav AS, Bon RS, Muench S

EMDB-70477:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70050:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

EMDB-70051:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70052:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70054:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70478:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

PDB-9o2x:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

PDB-9o2y:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70055:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70056:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-49835:
SARS-CoV-2 BA.1 S6P (HexaPro) + COV2-3835 Fab Local Refinement Map (RBD + Fv)
Method: single particle / : Ramamohan AR, Johnson NV, McLellan JS

PDB-9nvg:
Structure of SARS-CoV-2 BA.1 spike RBD bound to COV2-3835 Fab
Method: single particle / : Ramamohan AR, Johnson NV, McLellan JS

EMDB-73297:
GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
Method: single particle / : Susorov D, Korostelev AA

EMDB-73311:
GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypg:
GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypw:
GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
Method: single particle / : Susorov D, Korostelev AA

EMDB-73314:
Ribosome with accommodated A-site tRNA, Structure V
Method: single particle / : Susorov D, Korostelev AA

EMDB-73315:
Vacant ribosome with P-site tRNA, substate 1, Structure Ia
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypy:
Ribosome with accommodated A-site tRNA, Structure V
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypz:
Vacant ribosome with P-site tRNA, substate 1, Structure Ia
Method: single particle / : Susorov D, Korostelev AA

EMDB-73302:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
Method: single particle / : Susorov D, Korostelev AA

EMDB-73307:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
Method: single particle / : Susorov D, Korostelev AA

EMDB-73308:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
Method: single particle / : Susorov D, Korostelev AA

EMDB-73310:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
Method: single particle / : Susorov D, Korostelev AA

EMDB-73316:
Vacant ribosome with P-site tRNA, substate 2, Structure Ib
Method: single particle / : Susorov D, Korostelev AA

EMDB-73317:
Vacant ribosome with P-site tRNA, substate 3, Structure Ic
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypo:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
Method: single particle / : Susorov D, Korostelev AA

PDB-9yps:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypt:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypv:
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
Method: single particle / : Susorov D, Korostelev AA

PDB-9yq0:
Vacant ribosome with P-site tRNA, substate 2, Structure Ib
Method: single particle / : Susorov D, Korostelev AA

PDB-9yq1:
Vacant ribosome with P-site tRNA, substate 3, Structure Ic
Method: single particle / : Susorov D, Korostelev AA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more