[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,164 items for (author: ye & k)

EMDB-19066:
TREK2 in OGNG/CHS detergent micelle with biparatopic inhibitory nanobody Nb6158
Method: single particle / : Smith KHM, Tucker SJ

EMDB-44368:
Cryo-EM structure of the E396A mutant of human TRPM4 in complex with calcium at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

PDB-9b94:
Cryo-EM structure of the E396A mutant of human TRPM4 in complex with calcium at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-19426:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-19427:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-19428:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-19429:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rpy:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rpz:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rq0:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
Method: single particle / : Lauer S, Nikolay R, Spahn C

PDB-8rq2:
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Method: single particle / : Lauer S, Nikolay R, Spahn C

EMDB-37606:
Cryo-EM structure of DSR2-TUBE complex
Method: single particle / : Gao A, Huang J, Zhu K

EMDB-37607:
Cryo-EM structure of DSR2-DSAD1 complex
Method: single particle / : Gao A, Huang J, Zhu K

EMDB-37610:
Cryo-EM structure of DSR2
Method: single particle / : Gao A, Huang J, Zhu K

PDB-8wks:
Cryo-EM structure of DSR2-TUBE complex
Method: single particle / : Gao A, Huang J, Zhu K

PDB-8wkt:
Cryo-EM structure of DSR2-DSAD1 complex
Method: single particle / : Gao A, Huang J, Zhu K

PDB-8wkx:
Cryo-EM structure of DSR2
Method: single particle / : Gao A, Huang J, Zhu K

EMDB-44369:
Cryo-EM structure of the human TRPM4 channel in complex with calcium, decavanadate and ATP at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44124:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44125:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44128:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44129:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44130:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44131:
Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44132:
Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-18170:
YPEL5-bound WDR26-CTLH E3 ligase - assembly I
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18171:
YPEL5-bound WDR26-CTLH E3 ligase - assembly II
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18172:
NMNAT1 core-bound RANBP9-TWA1-WDR26 module of WDR26-CTLH E3 ligase
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18173:
NMNAT1 loop-bound RANBP9-TWA1-WDR26 module of WDR26-CTLH E3 ligase
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18174:
NMNAT1-bound WDR26-CTLH E3 ligase assembly I - class 1
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18175:
NMNAT1-bound WDR26-CTLH E3 ligase assembly I - class 2
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18176:
NMNAT1-bound WDR26-CTLH E3 ligase assembly II - class 1
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18177:
NMNAT1-bound WDR26-CTLH E3 ligase assembly II - class 2
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18178:
NMNAT1-bound WDR26-CTLH E3 ligase assembly II - class 3
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18316:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to YPEL5
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-18345:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to NMNAT1 substrate
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

PDB-8qbn:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to YPEL5
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

PDB-8qe8:
Structure of the non-canonical CTLH E3 substrate receptor WDR26 bound to NMNAT1 substrate
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-44360:
Cryo-EM structure of the human TRPM4 in complex with calcium at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44361:
Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44362:
Cryo-EM structure of the human TRPM4 channel in complex with calcium and decavanadate at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44363:
Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium and decavanadate at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44364:
Cryo-EM structure of the human TRPM4 channel in complex with calcium and ATP at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44365:
Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium and ATP at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44366:
Cryo-EM structure of the human TRPM4 in complex with calcium at 18 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

EMDB-44367:
Cryo-EM structure of the human TRPM4 channel in the presence of EDTA at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

PDB-9b8w:
Cryo-EM structure of the human TRPM4 in complex with calcium at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

PDB-9b8x:
Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

PDB-9b8y:
Cryo-EM structure of the human TRPM4 channel in complex with calcium and decavanadate at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

PDB-9b8z:
Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium and decavanadate at 37 degrees Celsius
Method: single particle / : Hu J, Lu W, Du J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more