4U3

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	C2	doub	1.22Å	1.38Å
C2	N3	sing	1.33Å	1.43Å
C2	N1	sing	1.35Å	1.43Å
N3	C4	doub	1.33Å	1.43Å
C1'	O4'	sing	1.44Å	1.42Å
C1'	N1	sing	1.46Å	1.47Å
C1'	C2'	sing	1.54Å	1.49Å
O4'	C4'	sing	1.44Å	1.42Å
N1	C6	sing	1.36Å	1.43Å
O3'	C3'	sing	1.43Å	1.36Å
C4	N4	sing	1.38Å	1.44Å
C4	C5	sing	1.41Å	1.43Å
C4'	C3'	sing	1.54Å	1.47Å
C4'	C5'	sing	1.53Å	1.52Å
C2'	C3'	sing	1.54Å	1.49Å
C6	C5	doub	1.35Å	1.43Å
C5	CL5	sing	1.74Å	1.72Å
C5'	O5'	sing	1.43Å	1.37Å
O5'	P	sing	1.61Å	1.54Å
OP2	P	sing	1.61Å	1.53Å
P	OP1	doub	1.48Å	1.57Å
C6	H6	sing	1.08Å	1.08Å
OP2	HOP2	sing	0.97Å	0.95Å
C5'	H5''	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H7	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2''	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
N4	H41	sing	0.97Å	1.00Å
N4	H42	sing	0.97Å	1.00Å
P	OP3	sing	1.61Å	1.61Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	C2	N3	118.5°	119.4°
O2	C2	N1	121.4°	119.4°
N3	C2	N1	120.1°	121.1°
C2	N3	C4	120.4°	120.7°
C2	N1	C1'	121.5°	119.8°
C2	N1	C6	119.5°	120.3°
N3	C4	N4	119.4°	120.2°
N3	C4	C5	119.3°	119.6°
O4'	C1'	N1	109.8°	110.4°
O4'	C1'	C2'	109.5°	104.8°
C1'	O4'	C4'	107.7°	105.3°
O4'	C1'	H1'	108.0°	110.3°
N1	C1'	C2'	114.9°	110.4°
C1'	N1	C6	119.1°	119.8°
N1	C1'	H1'	107.3°	110.3°
C1'	C2'	C3'	101.0°	104.1°
C1'	C2'	H2'	111.6°	110.5°
C1'	C2'	H2''	111.6°	110.6°
C2'	C1'	H1'	107.1°	110.5°
O4'	C4'	C3'	107.8°	104.8°
O4'	C4'	C5'	112.9°	110.4°
O4'	C4'	H4'	110.2°	110.4°
N1	C6	C5	120.4°	119.2°
N1	C6	H6	119.8°	120.4°
O3'	C3'	C4'	107.5°	110.5°
O3'	C3'	C2'	114.3°	110.6°
O3'	C3'	H7	110.8°	110.4°
C3'	O3'	HO3'	109.5°	114.0°
N4	C4	C5	121.3°	120.2°
C4	N4	H41	120.0°	120.0°
C4	N4	H42	120.0°	120.0°
C4	C5	C6	120.4°	119.0°
C4	C5	CL5	118.3°	120.5°
C3'	C4'	C5'	107.5°	110.4°
C4'	C3'	C2'	106.0°	104.1°
C3'	C4'	H4'	109.5°	110.4°
C4'	C3'	H7	109.2°	110.5°
C4'	C5'	O5'	110.4°	109.5°
C4'	C5'	H5''	109.2°	109.4°
C4'	C5'	H5'	109.2°	109.4°
C5'	C4'	H4'	108.8°	110.3°
C2'	C3'	H7	108.9°	110.5°
C3'	C2'	H2'	111.6°	110.5°
C3'	C2'	H2''	111.5°	110.5°
C6	C5	CL5	121.2°	120.5°
C5	C6	H6	119.8°	120.4°
C5'	O5'	P	125.5°	123.0°
O5'	C5'	H5''	109.3°	109.5°
O5'	C5'	H5'	109.2°	109.5°
O5'	P	OP2	105.6°	109.5°
O5'	P	OP1	110.6°	109.5°
O5'	P	OP3	104.4°	109.4°
OP2	P	OP1	114.5°	109.5°
P	OP2	HOP2	109.5°	114.0°
OP2	P	OP3	111.1°	109.4°
OP1	P	OP3	110.1°	109.4°
H5''	C5'	H5'	109.5°	109.5°
H2'	C2'	H2''	109.5°	110.5°
H41	N4	H42	120.0°	120.0°
P	OP3	HOP3	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	C2	N3	N1	179.4°	179.7°
O2	C2	N3	C4	179.9°	179.7°
O2	C2	N1	C1'	0.4°	0.2°
O2	C2	N1	C6	180.0°	179.7°
N3	C2	N1	C1'	178.9°	180.0°
N3	C2	N1	C6	0.6°	0.0°
C2	N3	C4	N4	179.8°	179.9°
C2	N3	C4	C5	0.2°	0.0°
N1	C2	N3	C4	0.6°	0.0°
C2	N1	C1'	O4'	108.2°	53.6°
C2	N1	C1'	C6	179.6°	179.9°
C2	N1	C1'	C2'	127.9°	61.8°
C2	N1	C6	C5	0.1°	0.1°
C2	N1	C6	H6	180.0°	180.0°
C2	N1	C1'	H1'	8.9°	175.8°
N3	C4	N4	C5	179.6°	179.9°
N3	C4	C5	C6	0.9°	0.1°
N3	C4	C5	CL5	179.5°	180.0°
N3	C4	N4	H41	0.0°	0.1°
N3	C4	N4	H42	180.0°	180.0°
O4'	C1'	N1	C2'	123.9°	115.4°
O4'	C1'	N1	H1'	117.1°	122.2°
O4'	C1'	C2'	H1'	116.8°	118.8°
O4'	C1'	N1	C6	71.4°	126.4°
C1'	O4'	C4'	C3'	6.1°	40.5°
C1'	O4'	C4'	C5'	112.5°	159.3°
O4'	C1'	C2'	C3'	25.2°	24.0°
C1'	O4'	C4'	H4'	125.5°	78.4°
O4'	C1'	C2'	H2'	143.8°	94.7°
O4'	C1'	C2'	H2''	93.4°	142.7°
N1	C1'	C2'	H1'	119.1°	122.3°
N1	C1'	O4'	C4'	139.5°	159.3°
N1	C1'	C2'	C3'	149.2°	142.8°
C1'	N1	C6	C5	179.7°	180.0°
C1'	N1	C6	H6	0.4°	0.1°
N1	C1'	C2'	H2'	92.1°	24.2°
N1	C1'	C2'	H2''	30.6°	98.5°
C2'	C1'	O4'	C4'	12.5°	40.5°
C2'	C1'	N1	C6	52.6°	118.2°
C1'	C2'	C3'	O3'	90.2°	118.7°
C1'	C2'	C3'	C4'	27.9°	0.0°
C1'	C2'	C3'	H2'	118.6°	118.6°
C1'	C2'	C3'	H2''	118.6°	118.7°
C1'	C2'	C3'	H7	145.2°	118.7°
C1'	C2'	H2'	H2''	123.9°	122.7°
O4'	C4'	C3'	O3'	100.4°	142.7°
O4'	C4'	C3'	C5'	122.0°	118.9°
O4'	C4'	C3'	H4'	119.9°	118.9°
O4'	C4'	C5'	H4'	122.8°	122.3°
O4'	C4'	C3'	C2'	22.2°	23.9°
O4'	C4'	C5'	O5'	4.1°	69.6°
O4'	C4'	C5'	H5''	124.2°	50.5°
O4'	C4'	C5'	H5'	116.0°	170.4°
O4'	C4'	C3'	H7	139.4°	94.7°
C4'	O4'	C1'	H1'	103.8°	78.5°
N1	C6	C5	C4	0.8°	0.1°
N1	C6	C5	H6	180.0°	179.9°
N1	C6	C5	CL5	179.4°	180.0°
C6	N1	C1'	H1'	171.5°	4.3°
O3'	C3'	C4'	C2'	122.6°	118.8°
O3'	C3'	C4'	H7	120.3°	122.5°
O3'	C3'	C4'	C5'	137.6°	98.4°
O3'	C3'	C2'	H7	124.5°	122.6°
O3'	C3'	C4'	H4'	19.5°	23.9°
O3'	C3'	C2'	H2'	28.4°	122.7°
O3'	C3'	C2'	H2''	151.1°	0.0°
N4	C4	C5	C6	179.6°	180.0°
N4	C4	C5	CL5	0.9°	0.1°
C4	N4	H41	H42	180.0°	179.9°
C4	C5	C6	CL5	178.6°	179.9°
C4	C5	C6	H6	179.2°	180.0°
C5	C4	N4	H41	179.5°	180.0°
C5	C4	N4	H42	0.5°	0.1°
C3'	C4'	C5'	H4'	118.5°	122.3°
C4'	C3'	C2'	H7	117.3°	118.7°
C3'	C4'	C5'	O5'	122.8°	175.0°
C3'	C4'	C5'	H5''	117.0°	65.0°
C3'	C4'	C5'	H5'	2.7°	55.0°
C4'	C3'	O3'	HO3'	180.0°	180.0°
C4'	C3'	C2'	H2'	146.6°	118.6°
C4'	C3'	C2'	H2''	90.7°	118.8°
C5'	C4'	C3'	C2'	99.8°	142.8°
C4'	C5'	O5'	H5''	120.1°	120.0°
C4'	C5'	O5'	H5'	120.1°	120.0°
C4'	C5'	O5'	P	160.7°	180.0°
C4'	C5'	H5''	H5'	119.6°	119.9°
C5'	C4'	C3'	H7	17.3°	24.1°
C2'	C3'	C4'	H4'	142.1°	94.9°
C2'	C3'	O3'	HO3'	62.7°	65.3°
C3'	C2'	H2'	H2''	123.9°	122.7°
C3'	C2'	C1'	H1'	91.7°	94.9°
CL5	C5	C6	H6	0.6°	0.0°
C5'	O5'	P	OP2	160.9°	65.0°
C5'	O5'	P	OP1	74.7°	55.0°
O5'	C5'	H5''	H5'	119.6°	120.1°
O5'	C5'	C4'	H4'	118.7°	52.7°
C5'	O5'	P	OP3	43.7°	175.0°
O5'	P	OP2	OP1	121.9°	120.1°
O5'	P	OP2	OP3	112.6°	120.0°
O5'	P	OP1	OP3	114.9°	120.0°
O5'	P	OP2	HOP2	121.9°	59.9°
P	O5'	C5'	H5''	79.2°	60.0°
P	O5'	C5'	H5'	40.6°	60.0°
O5'	P	OP3	HOP3	118.7°	180.0°
OP2	P	OP1	OP3	126.0°	120.0°
OP2	P	OP3	HOP3	127.9°	60.0°
OP1	P	OP2	HOP2	0.0°	180.0°
OP1	P	OP3	HOP3	0.0°	60.0°
HOP2	OP2	P	OP3	125.5°	60.1°
H5''	C5'	C4'	H4'	1.4°	172.8°
H5'	C5'	C4'	H4'	121.2°	67.3°
H4'	C4'	C3'	H7	100.7°	146.4°
H7	C3'	O3'	HO3'	60.8°	57.4°
H7	C3'	C2'	H2'	96.1°	0.1°
H7	C3'	C2'	H2''	26.6°	122.6°
H2'	C2'	C1'	H1'	27.0°	146.5°
H2''	C2'	C1'	H1'	149.7°	23.8°

Release date:	2015-08-19
Definition date:	2015-05-27
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	5BOM