Author results

3TX7
  • Download 3tx7
  • View 3tx7
Molmil generated image of 3tx7
CRYSTAL STRUCTURE OF LRH-1/BETA-CATENIN COMPLEX
Descriptor:Catenin beta-1, Nuclear receptor subfamily 5 group A member 2, (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE
Authors:Yumoto, F., Fletterick, R.
Deposit date:2011-09-22
Release date:2011-12-14
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structural basis of coactivation of liver receptor homolog-1 by beta-catenin.
Proc.Natl.Acad.Sci.USA, 109, 2012
3TZ1
  • Download 3tz1
  • View 3tz1
Molmil generated image of 3tz1
CRYSTAL STRUCTURE OF THE CA2+-SATURATED C-TERMINAL DOMAIN OF AKAZARA SCALLOP TROPONIN C IN COMPLEX WITH A TROPONIN I FRAGMENT
Descriptor:Troponin C, Troponin I, CALCIUM ION
Authors:Yumoto, F., Kato, Y.S., Ohtsuki, I., Tanokura, M.
Deposit date:2011-09-26
Release date:2013-01-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Ca2+-saturated C-terminal domain of scallop troponin C in complex with a troponin I fragment
Biol.Chem., 394, 2012
1ION
  • Download 1ion
  • View 1ion
Molmil generated image of 1ion
THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:PROBABLE CELL DIVISION INHIBITOR MIND, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I.
Deposit date:2001-03-21
Release date:2001-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Structure, 9, 2001
1J0T
  • Download 1j0t
  • View 1j0t
Molmil generated image of 1j0t
THE SOLUTION STRUCTURE OF MOLT-INHIBITING HORMONE FROM THE KURUMA PRAWN
Descriptor:MOLT-INHIBITING HORMONE
Authors:Katayama, H., Nagata, K., Ohira, T., Yumoto, F., Tanokura, M., Nagasawa, H.
Deposit date:2002-11-22
Release date:2002-12-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of molt-inhibiting hormone from the Kuruma prawn Marsupenaeus japonicus
J.Biol.Chem., 278, 2003
1VDI
  • Download 1vdi
  • View 1vdi
Molmil generated image of 1vdi
SOLUTION STRUCTURE OF ACTIN-BINDING DOMAIN OF TROPONIN IN CA2+-FREE STATE
Descriptor:Troponin I, fast skeletal muscle
Authors:Murakami, K., Yumoto, F., Ohki, S., Yasunaga, T., Tanokura, M., Wakabayashi, T.
Deposit date:2004-03-22
Release date:2005-09-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
1VDJ
  • Download 1vdj
  • View 1vdj
Molmil generated image of 1vdj
SOLUTION STRUCTURE OF ACTIN-BINDING DOMAIN OF TROPONIN IN CA2+-BOUND STATE
Descriptor:Troponin I, fast skeletal muscle
Authors:Murakami, K., Yumoto, F., Ohki, S., Yasunaga, T., Tanokura, M., Wakabayashi, T.
Deposit date:2004-03-22
Release date:2005-09-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
5D4H
  • Download 5d4h
  • View 5d4h
Molmil generated image of 5d4h
HIGH-RESOLUTION NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SYNCHROTRON RADIATION CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4I
  • Download 5d4i
  • View 5d4i
Molmil generated image of 5d4i
INTACT NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4J
  • Download 5d4j
  • View 5d4j
Molmil generated image of 5d4j
CHLORIDE-BOUND FORM OF A COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, CHLORIDE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7A
  • Download 5f7a
  • View 5f7a
Molmil generated image of 5f7a
NITRITE COMPLEX STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7B
  • Download 5f7b
  • View 5f7b
Molmil generated image of 5f7b
RESTING STATE STRUCTURE OF CUNIR FORM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5XL0
  • Download 5xl0
  • View 5xl0
Molmil generated image of 5xl0
MET-AQUO FORM OF SPERM WHALE MYOGLOBIN RECONSTITUTED WITH 7-PF, A HEME POSSESSEING CF3 GROUP AS SIDE CHAIN
Descriptor:Myoglobin, fluorinated heme, SULFATE ION
Authors:Kanai, Y., Harada, A., Shibata, T., Nishimura, R., Namiki, K., Watanabe, M., Nakamura, S., Yumoto, F., Senda, T., Suzuki, A., Neya, S., Yamamoto, Y.
Deposit date:2017-05-10
Release date:2017-08-16
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Characterization of Heme Orientational Disorder in a Myoglobin Reconstituted with a Trifluoromethyl-Group-Substituted Heme Cofactor
Biochemistry, 56, 2017
1IX5
  • Download 1ix5
  • View 1ix5
Molmil generated image of 1ix5
SOLUTION STRUCTURE OF THE METHANOCOCCUS THERMOLITHOTROPHICUS FKBP
Descriptor:FKBP
Authors:Suzuki, R., Nagata, K., Kawakami, M., Nemoto, N., Furutani, M., Adachi, K., Maruyama, T., Tanokura, M.
Deposit date:2002-06-12
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
3U21
  • Download 3u21
  • View 3u21
Molmil generated image of 3u21
CRYSTAL STRUCTURE OF A FRAGMENT OF NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN (RESIDUES 370-495) (NFRKB) FROM HOMO SAPIENS AT 2.18 A RESOLUTION
Descriptor:Nuclear factor related to kappa-B-binding protein, SODIUM ION
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2011-09-30
Release date:2011-11-02
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.
Plos One, 7, 2012
4RBO
  • Download 4rbo
  • View 4rbo
Molmil generated image of 4rbo
CRYSTAL STRUCTURE OF A NANOG HOMEOBOX (NANOG) FROM HOMO SAPIENS AT 3.30 A RESOLUTION
Descriptor:Putative homeobox protein NANOGP8, 5'-D(*GP*GP*CP*CP*CP*AP*TP*TP*CP*AP*AP*G)-3', 5'-D(*CP*TP*TP*GP*AP*AP*TP*GP*GP*GP*CP*C)-3'
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2014-09-12
Release date:2014-10-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YSC
  • Download 4ysc
  • View 4ysc
Molmil generated image of 4ysc
COMPLETELY OXIDIZED STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, CHLORIDE ION
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
4YSE
  • Download 4yse
  • View 4yse
Molmil generated image of 4yse
HIGH RESOLUTION SYNCHROTRON STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5JOO
  • Download 5joo
  • View 5joo
Molmil generated image of 5joo
XFEL STRUCTURE OF INFLUENZA A M2 WILD TYPE TM DOMAIN AT LOW PH IN THE LIPIDIC CUBIC PHASE AT ROOM TEMPERATURE
Descriptor:Matrix protein 2, CALCIUM ION, CHLORIDE ION
Authors:Thomaston, J.L., Woldeyes, R.A., Fraser, J.S., DeGrado, W.F.
Deposit date:2016-05-02
Release date:2017-08-02
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (1.413 Å)
Cite:XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5TTC
  • Download 5ttc
  • View 5ttc
Molmil generated image of 5ttc
XFEL STRUCTURE OF INFLUENZA A M2 WILD TYPE TM DOMAIN AT HIGH PH IN THE LIPIDIC CUBIC PHASE AT ROOM TEMPERATURE
Descriptor:Matrix protein 2, CHLORIDE ION, CALCIUM ION
Authors:Thomaston, J.L., Woldeyes, R.A., Fraser, J.S., DeGrado, W.F.
Deposit date:2016-11-02
Release date:2017-08-23
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5UM1
  • Download 5um1
  • View 5um1
Molmil generated image of 5um1
XFEL STRUCTURE OF INFLUENZA A M2 WILD TYPE TM DOMAIN AT INTERMEDIATE PH IN THE LIPIDIC CUBIC PHASE AT ROOM TEMPERATURE
Descriptor:Matrix protein 2, CALCIUM ION, CHLORIDE ION
Authors:Thomaston, J.L., Woldeyes, R.A., Fraser, J.S., DeGrado, W.F.
Deposit date:2017-01-25
Release date:2017-08-23
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (1.451 Å)
Cite:XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WR8
  • Download 5wr8
  • View 5wr8
Molmil generated image of 5wr8
THAUMATIN STRUCTURE DETERMINED BY SACLA AT 1.55 ANGSTROM
Descriptor:Thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Suzuki, M., Inoue, S., Sugahara, M.
Deposit date:2016-12-01
Release date:2017-11-29
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WR9
  • Download 5wr9
  • View 5wr9
Molmil generated image of 5wr9
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WRA
  • Download 5wra
  • View 5wra
Molmil generated image of 5wra
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-06
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WRB
  • Download 5wrb
  • View 5wrb
Molmil generated image of 5wrb
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor:Lysozyme C, SODIUM ION, CHLORIDE ION
Authors:Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Deposit date:2016-12-01
Release date:2017-12-20
Method:X-RAY DIFFRACTION (2.013 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
5WRC
  • Download 5wrc
  • View 5wrc
Molmil generated image of 5wrc
CRYSTAL STRUCTURE OF PROTEINASE K FROM ENGYODONTIUM ALBUM
Descriptor:Proteinase K, NITRATE ION, PRASEODYMIUM ION
Authors:Sugahara, M., Nakane, T., Suzuki, M., Masuda, T., Inoue, S., Numata, K.
Deposit date:2016-12-01
Release date:2017-11-29
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Hydroxyethyl cellulose matrix applied to serial crystallography
Sci Rep, 7, 2017
<12>