Author results

3TX7
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CRYSTAL STRUCTURE OF LRH-1/BETA-CATENIN COMPLEX
Descriptor:Catenin beta-1, Nuclear receptor subfamily 5 group A member 2, (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE
Authors:Yumoto, F., Fletterick, R.
Deposit date:2011-09-22
Release date:2011-12-14
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structural basis of coactivation of liver receptor homolog-1 by beta-catenin.
Proc.Natl.Acad.Sci.USA, 109, 2012
3TZ1
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CRYSTAL STRUCTURE OF THE CA2+-SATURATED C-TERMINAL DOMAIN OF AKAZARA SCALLOP TROPONIN C IN COMPLEX WITH A TROPONIN I FRAGMENT
Descriptor:Troponin C, Troponin I, CALCIUM ION
Authors:Yumoto, F., Kato, Y.S., Ohtsuki, I., Tanokura, M.
Deposit date:2011-09-26
Release date:2013-01-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Ca2+-saturated C-terminal domain of scallop troponin C in complex with a troponin I fragment
Biol.Chem., 394, 2012
1ION
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THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:PROBABLE CELL DIVISION INHIBITOR MIND, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Sakai, N., Yao, M., Itou, H., Watanabe, N., Yumoto, F., Tanokura, M., Tanaka, I.
Deposit date:2001-03-21
Release date:2001-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Structure, 9, 2001
1J0T
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THE SOLUTION STRUCTURE OF MOLT-INHIBITING HORMONE FROM THE KURUMA PRAWN
Descriptor:MOLT-INHIBITING HORMONE
Authors:Katayama, H., Nagata, K., Ohira, T., Yumoto, F., Tanokura, M., Nagasawa, H.
Deposit date:2002-11-22
Release date:2002-12-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of molt-inhibiting hormone from the Kuruma prawn Marsupenaeus japonicus
J.Biol.Chem., 278, 2003
1VDI
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SOLUTION STRUCTURE OF ACTIN-BINDING DOMAIN OF TROPONIN IN CA2+-FREE STATE
Descriptor:Troponin I, fast skeletal muscle
Authors:Murakami, K., Yumoto, F., Ohki, S., Yasunaga, T., Tanokura, M., Wakabayashi, T.
Deposit date:2004-03-22
Release date:2005-09-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
1VDJ
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SOLUTION STRUCTURE OF ACTIN-BINDING DOMAIN OF TROPONIN IN CA2+-BOUND STATE
Descriptor:Troponin I, fast skeletal muscle
Authors:Murakami, K., Yumoto, F., Ohki, S., Yasunaga, T., Tanokura, M., Wakabayashi, T.
Deposit date:2004-03-22
Release date:2005-09-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis for Ca(2+)-regulated Muscle Relaxation at Interaction Sites of Troponin with Actin and Tropomyosin
J.Mol.Biol., 352, 2005
5D4H
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HIGH-RESOLUTION NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SYNCHROTRON RADIATION CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4I
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INTACT NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE DETERMINED BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4J
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CHLORIDE-BOUND FORM OF A COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, CHLORIDE ION, ...
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7A
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NITRITE COMPLEX STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, NITRITE ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5F7B
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RESTING STATE STRUCTURE OF CUNIR FORM ALCALIGENES FAECALIS DETERMINED AT 293 K
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION
Authors:Fukuda, Y., Tse, K.M., Nakane, T., Nakatsu, T., Suzuki, M., Sugahara, M., Inoue, S., Masuda, T., Yumoto, F., Matsugaki, N., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Murphy, M.E.P., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5XL0
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MET-AQUO FORM OF SPERM WHALE MYOGLOBIN RECONSTITUTED WITH 7-PF, A HEME POSSESSEING CF3 GROUP AS SIDE CHAIN
Descriptor:Myoglobin, fluorinated heme, SULFATE ION
Authors:Kanai, Y., Harada, A., Shibata, T., Nishimura, R., Namiki, K., Watanabe, M., Nakamura, S., Yumoto, F., Senda, T., Suzuki, A., Neya, S., Yamamoto, Y.
Deposit date:2017-05-10
Release date:2017-08-16
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Characterization of Heme Orientational Disorder in a Myoglobin Reconstituted with a Trifluoromethyl-Group-Substituted Heme Cofactor
Biochemistry, 56, 2017
6KEL
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CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER NOPPERA-BO, GLUTATHIONE S-TRANSFERASE EPSILON 14 (DMGSTE14), IN APO-FORM
Descriptor:Glutathione S-transferase E14, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Koiwai, K., Inaba, K., Morohashi, K., Yumoto, F., Senda, T., Niwa, R.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEM
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CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER NOPPERA-BO, GLUTATHIONE S-TRANSFERASE EPSILON 14 (DMGSTE14), IN APO-FORM 2
Descriptor:Glutathione S-transferase E14
Authors:Koiwai, K., Inaba, K., Morohashi, K., Yumoto, F., Niwa, R., Senda, T.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEN
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CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER NOPPERA-BO, GLUTATHIONE S-TRANSFERASE EPSILON 14 (DMGSTE14), IN GLUTATHIONE-BOUND FORM
Descriptor:Glutathione S-transferase E14, GLUTATHIONE
Authors:Koiwai, K., Inaba, K., Morohashi, K., Yumoto, F., Niwa, R., Senda, T.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEO
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CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER NOPPERA-BO, GLUTATHIONE S-TRANSFERASE EPSILON 14 (DMGSTE14), IN 17BETA-ESTRADIOL-BOUND FORM
Descriptor:Glutathione S-transferase E14, ESTRADIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Koiwai, K., Inaba, K., Morohashi, K., Yumoto, F., Niwa, R., Senda, T.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEP
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CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER NOPPERA-BO, GLUTATHIONE S-TRANSFERASE EPSILON 14 (DMGSTE14), IN 17BETA-ESTRADIOL- AND GLUTATHIONE-BOUND FORM
Descriptor:Glutathione S-transferase E14, GLUTATHIONE, ESTRADIOL
Authors:Koiwai, K., Inaba, K., Morohashi, K., Yumoto, F., Niwa, R., Senda, T.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEQ
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CRYSTAL STRUCTURE OF D113A MUTANT OF DROSOPHILA MELANOGASTER NOPPERA-BO, GLUTATHIONE S-TRANSFERASE EPSILON 14 (DMGSTE14), IN APO-FORM
Descriptor:Glutathione S-transferase E14
Authors:Koiwai, K., Inaba, K., Morohashi, K., Yumoto, F., Niwa, R., Senda, T.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KER
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CRYSTAL STRUCTURE OF D113A MUTANT OF DROSOPHILA MELANOGASTER NOPPERA-BO, GLUTATHIONE S-TRANSFERASE EPSILON 14 (DMGSTE14), IN GLUTATHIONE-BOUND FORM
Descriptor:Glutathione S-transferase E14, GLUTATHIONE
Authors:Koiwai, K., Inaba, K., Morohashi, K., Yumoto, F., Niwa, R., Senda, T.
Deposit date:2019-07-04
Release date:2019-10-02
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KNF
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CRYOEM MAP AND MODEL OF NITRITE REDUCTASE AT PH 6.2
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION
Authors:Adachi, N., Yamaguchi, T., Moriya, T., Kawasaki, M., Koiwai, K., Shinoda, A., Yamada, Y., Yumoto, F., Kohzuma, T., Senda, T.
Deposit date:2019-08-05
Release date:2020-08-12
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:CryoEM map and model of Nitrite Reductase at pH 6.2
To Be Published
6KNG
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CRYOEM MAP AND MODEL OF NITRITE REDUCTASE AT PH 8.1
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION
Authors:Adachi, N., Yamaguchi, T., Moriya, T., Kawasaki, M., Koiwai, K., Shinoda, A., Yamada, Y., Yumoto, F., Kohzuma, T., Senda, T.
Deposit date:2019-08-05
Release date:2020-08-12
Last modified:2020-09-09
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:CryoEM map and model of Nitrite Reductase at pH 8.1
To Be Published
1IX5
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SOLUTION STRUCTURE OF THE METHANOCOCCUS THERMOLITHOTROPHICUS FKBP
Descriptor:FKBP
Authors:Suzuki, R., Nagata, K., Kawakami, M., Nemoto, N., Furutani, M., Adachi, K., Maruyama, T., Tanokura, M.
Deposit date:2002-06-12
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
3U21
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CRYSTAL STRUCTURE OF A FRAGMENT OF NUCLEAR FACTOR RELATED TO KAPPA-B-BINDING PROTEIN (RESIDUES 370-495) (NFRKB) FROM HOMO SAPIENS AT 2.18 A RESOLUTION
Descriptor:Nuclear factor related to kappa-B-binding protein, SODIUM ION
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2011-09-30
Release date:2011-11-02
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.
Plos One, 7, 2012
4RBO
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CRYSTAL STRUCTURE OF A NANOG HOMEOBOX (NANOG) FROM HOMO SAPIENS AT 3.30 A RESOLUTION
Descriptor:Putative homeobox protein NANOGP8, 5'-D(*GP*GP*CP*CP*CP*AP*TP*TP*CP*AP*AP*G)-3', 5'-D(*CP*TP*TP*GP*AP*AP*TP*GP*GP*GP*CP*C)-3'
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2014-09-12
Release date:2014-10-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YSC
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COMPLETELY OXIDIZED STRUCTURE OF COPPER NITRITE REDUCTASE FROM ALCALIGENES FAECALIS
Descriptor:Copper-containing nitrite reductase, COPPER (II) ION, CHLORIDE ION
Authors:Fukuda, Y., Tse, K.M., Suzuki, M., Diederichs, K., Hirata, K., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S., Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2016-06-22
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
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170172
PDB entries from 2020-10-21