Author results

2FD8
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T
Descriptor:5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, FE (II) ION, ...
Authors:Yu, B., Benach, J., Edstrom, W.C., Gibney, B.R., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-13
Release date:2006-02-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
2FDF
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH CO(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T
Descriptor:5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, COBALT (II) ION, ...
Authors:Yu, B., Benach, J., Edstrom, W.C., Gibney, B.R., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-13
Release date:2006-02-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
2FDG
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II), SUCCINATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T
Descriptor:5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, FE (II) ION, ...
Authors:Yu, B., Benach, J., Edstrom, W.C., Gibney, B.R., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-13
Release date:2006-02-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
2FDH
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH MN(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T
Descriptor:5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, MANGANESE (II) ION, ...
Authors:Yu, B., Benach, J., Edstrom, W.C., Gibney, B.R., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-14
Release date:2006-02-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
2FDI
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T (AIR 3 HOURS)
Descriptor:5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, FE (II) ION, ...
Authors:Yu, B., Benach, J., Edstrom, W.C., Gibney, B.R., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-14
Release date:2006-02-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
2FDJ
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II) AND SUCCINATE
Descriptor:Alkylated DNA repair protein alkB, FE (II) ION, SUCCINIC ACID
Authors:Yu, B., Benach, J., Edstrom, W.C., Gibney, B.R., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-14
Release date:2006-02-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
2FDK
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T (AIR 9 DAYS)
Descriptor:5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, FE (II) ION, ...
Authors:Yu, B., Benach, J., Edstrom, W.C., Gibney, B.R., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-14
Release date:2006-02-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
3I2O
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II), 2-OXOGLUTARATE AND METHYLATED TRINUCLEOTIDE T-MEA-T
Descriptor:Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(MA7)P*T)-3'), 2-OXOGLUTARIC ACID, ...
Authors:Yu, B., Hunt, J.F.
Deposit date:2009-06-29
Release date:2009-08-25
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB.
Proc.Natl.Acad.Sci.USA, 106, 2009
3I3M
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH MN(II), 2-OXOGLUTARATE AND METHYLATED TRINUCLEOTIDE T-MEC-T
Descriptor:Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(ME6)P*T)-3'), 2-OXOGLUTARIC ACID, ...
Authors:Yu, B., Hunt, J.F.
Deposit date:2009-06-30
Release date:2009-08-25
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB.
Proc.Natl.Acad.Sci.USA, 106, 2009
3I3Q
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH MN(II) AND 2-OXOGLUTARATE
Descriptor:Alpha-ketoglutarate-dependent dioxygenase alkB, 2-OXOGLUTARIC ACID, MANGANESE (II) ION
Authors:Yu, B., Hunt, J.F.
Deposit date:2009-06-30
Release date:2009-08-25
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB.
Proc.Natl.Acad.Sci.USA, 106, 2009
3I49
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CRYSTAL STRUCTURE OF ALKB IN COMPLEX WITH FE(II), 2-OXOGLUTARATE AND METHYLATED TRINUCLEOTIDE T-MEC-T
Descriptor:Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(ME6)P*T)-3'), 2-OXOGLUTARIC ACID, ...
Authors:Yu, B., Hunt, J.F.
Deposit date:2009-07-01
Release date:2009-08-25
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB.
Proc.Natl.Acad.Sci.USA, 106, 2009
3SEO
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CRYSTAL STRUCTURE OF VOPL C TERMINAL DOMAIN
Descriptor:VopL C terminal domain protein, CHLORIDE ION
Authors:Yu, B., Rosen, M.K., Tomchick, D.R.
Deposit date:2011-06-10
Release date:2011-08-31
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.305 Å)
Cite:Mechanism of actin filament nucleation by the bacterial effector VopL.
Nat.Struct.Mol.Biol., 18, 2011
6JLI
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CRYSTAL STRUCTURE OF CTLD7 DOMAIN OF HUMAN PLA2R
Descriptor:Secretory phospholipase A2 receptor, N-ACETYL-D-GLUCOSAMINE
Authors:Yu, B., Hu, Z., Kong, D., Cheng, C., He, Y.
Deposit date:2019-03-06
Release date:2019-07-17
Last modified:2019-09-04
Method:X-RAY DIFFRACTION (1.778 Å)
Cite:Crystal structure of the CTLD7 domain of human M-type phospholipase A2 receptor.
J.Struct.Biol., 207, 2019
9ILB
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HUMAN INTERLEUKIN-1 BETA
Descriptor:PROTEIN (HUMAN INTERLEUKIN-1 BETA)
Authors:Yu, B., Blaber, M., Gronenborn, A.M., Clore, G.M., Caspar, D.L.D.
Deposit date:1998-10-22
Release date:1999-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography.
Proc.Natl.Acad.Sci.USA, 96, 1999
3KY9
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AUTOINHIBITED VAV1
Descriptor:Proto-oncogene vav, ZINC ION
Authors:Tomchick, D.R., Rosen, M.K., Machius, M., Yu, B.
Deposit date:2009-12-04
Release date:2010-02-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.731 Å)
Cite:Structural and Energetic Mechanisms of Cooperative Autoinhibition and Activation of Vav1
Cell(Cambridge,Mass.), 140, 2010
2K4K
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SOLUTION STRUCTURE OF GSP13 FROM BACILLUS SUBTILIS
Descriptor:General stress protein 13
Authors:Yu, W., Yu, B., Hu, J., Jin, C., Xia, B.
Deposit date:2008-06-13
Release date:2009-05-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of GSP13 from Bacillus subtilis exhibits an S1 domain related to cold shock proteins.
J.Biomol.Nmr, 43, 2009
1LEE
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CRYSTAL STRUCTURE OF PLASMEPSIN FROM P. FALCIPARUM IN COMPLEX WITH INHIBITOR RS367
Descriptor:Plasmepsin 2, 4-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE
Authors:Asojo, O.A., Afonina, E., Gulnik, S.V., Yu, B., Erickson, J.W., Randad, R., Mehadjed, D., Silva, A.M.
Deposit date:2002-04-09
Release date:2002-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of Ser205 mutant plasmepsin II from Plasmodium falciparum at 1.8 A in complex with the inhibitors rs367 and rs370.
Acta Crystallogr.,Sect.D, 58, 2002
1LF2
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CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR RS370
Descriptor:Plasmepsin 2, 3-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE
Authors:Asojo, O.A., Afonina, E., Gulnik, S.V., Yu, B., Erickson, J.W., Randad, R., Mehadjed, D., Silva, A.M.
Deposit date:2002-04-10
Release date:2002-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of Ser205 mutant plasmepsin II from Plasmodium falciparum at 1.8 A in complex with the inhibitors rs367 and rs370.
Acta Crystallogr.,Sect.D, 58, 2002
1S4N
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CRYSTAL STRUCTURE OF YEAST ALPHA1,2-MANNOSYLTRANSFERASE KRE2P/MNT1P
Descriptor:Glycolipid 2-alpha-mannosyltransferase, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Lobsanov, Y.D., Romero, P.A., Sleno, B., Yu, B., Yip, P., Herscovics, A., Howell, P.L.
Deposit date:2004-01-16
Release date:2004-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure of Kre2p/Mnt1p: A YEAST {alpha}1,2-MANNOSYLTRANSFERASE INVOLVED IN MANNOPROTEIN BIOSYNTHESIS
J.Biol.Chem., 279, 2004
1S4O
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CRYSTAL STRUCTURE OF YEAST ALPHA1,2-MANNOSYLTRANSFERASE KRE2P/MNT1P: BINARY COMPLEX WITH GDP/MN
Descriptor:Glycolipid 2-alpha-mannosyltransferase, N-ACETYL-D-GLUCOSAMINE, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, ...
Authors:Lobsanov, Y.D., Romero, P.A., Sleno, B., Yu, B., Yip, P., Herscovics, A., Howell, P.L.
Deposit date:2004-01-16
Release date:2004-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure of Kre2p/Mnt1p: A YEAST {alpha}1,2-MANNOSYLTRANSFERASE INVOLVED IN MANNOPROTEIN BIOSYNTHESIS
J.Biol.Chem., 279, 2004
1S4P
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CRYSTAL STRUCTURE OF YEAST ALPHA1,2-MANNOSYLTRANSFERASE KRE2P/MNT1P: TERNARY COMPLEX WITH GDP/MN AND METHYL-ALPHA-MANNOSIDE ACCEPTOR
Descriptor:Glycolipid 2-alpha-mannosyltransferase, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Lobsanov, Y.D., Romero, P.A., Sleno, B., Yu, B., Yip, P., Herscovics, A., Howell, P.L.
Deposit date:2004-01-16
Release date:2004-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure of Kre2p/Mnt1p: A YEAST {alpha}1,2-MANNOSYLTRANSFERASE INVOLVED IN MANNOPROTEIN BIOSYNTHESIS
J.Biol.Chem., 279, 2004
2LP6
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REFINED SOLUTION NMR STRUCTURE OF THE 50S RIBOSOMAL PROTEIN L35AE FROM PYROCOCCUS FURIOSUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET (NESG) PFR48
Descriptor:50S ribosomal protein L35Ae
Authors:Snyder, D.A., Aramini, J.M., Yu, B., Huang, Y.J., Xiao, R., Cort, J.R., Shastry, R., Ma, L., Liu, J., Rost, B., Acton, T.B., Kennedy, M.A., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-02-02
Release date:2012-02-15
Last modified:2012-06-20
Method:SOLUTION NMR
Cite:Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.
Proteins, 80, 2012
4ZHN
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CRYSTAL STRUCTURE OF ALKB T208A MUTANT PROTEIN IN COMPLEX WITH CO(II), 2-OXOGLUTARATE, AND METHYLATED TRINUCLEOTIDE T-MEA-T
Descriptor:methylated trinucleotide DNA T-meA-T, Alpha-ketoglutarate-dependent dioxygenase AlkB, COBALT (II) ION, ...
Authors:Ergel, B., Yu, B., Vorobiev, S.M., Forouhar, F., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2015-04-25
Release date:2015-12-23
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.333 Å)
Cite:DFT Studies of the Rate-Limiting Step in the Reaction Cycle of the Fe/2OG Dioxygenase AlkB and Related Experimental Studies
To be published
1K7W
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CRYSTAL STRUCTURE OF S283A DUCK DELTA 2 CRYSTALLIN MUTANT
Descriptor:delta 2 crystallin, ARGININOSUCCINATE
Authors:Sampaleanu, L.M., Yu, B., Howell, P.L.
Deposit date:2001-10-22
Release date:2002-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Mutational analysis of duck delta 2 crystallin and the structure of an inactive mutant with bound substrate provide insight into the enzymatic mechanism of argininosuccinate lyase.
J.Biol.Chem., 277, 2002
1LF3
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CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR EH58
Descriptor:plasmepsin 2, N-(1-BENZYL-3-{[3-(1,3-DIOXO-1,3-DIHYDRO-ISOINDOL-2-YL)-PROPIONYL]-[2-(HEXAHYDRO-BENZO[1,3]DIOXOL-5-YL)-ETHYL]-AMINO}-2-HYDROXY-PROPYL)-4-BENZYLOXY-3,5-DIMETHOXY-BENZAMIDE
Authors:Asojo, O.A., Gulnik, S.V., Afonina, E., Yu, B., Ellman, J.A., Haque, T.S., Silva, A.M.
Deposit date:2002-04-10
Release date:2002-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Novel uncomplexed and complexed structures of plasmepsin II, an aspartic protease from Plasmodium falciparum.
J.Mol.Biol., 327, 2003
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