Author results

1A2X
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COMPLEX OF TROPONIN C WITH A 47 RESIDUE (1-47) FRAGMENT OF TROPONIN I
Descriptor:TROPONIN C, TROPONIN I, CALCIUM ION
Authors:Vassylyev, D.G., Takeda, S., Wakatsuki, S., Maeda, K., Maeda, Y.
Deposit date:1998-01-13
Release date:1998-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of troponin C in complex with troponin I fragment at 2.3-A resolution.
Proc.Natl.Acad.Sci.USA, 95, 1998
2A6E
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Artsimovitch, I., Vassylyeva, M.N., Svetlov, D., Svetlov, V., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Tahirov, T.H., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-02
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins.
Cell(Cambridge,Mass.), 122, 2005
1UJJ
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PEPTIDE FROM BACE
Descriptor:ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase
Authors:Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y., Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
1UJK
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PHOSPHOPEPTIDE FROM BACE
Descriptor:ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase, IODIDE ION
Authors:Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y., Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
1V82
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CRYSTAL STRUCTURE OF HUMAN GLCAT-P APO FORM
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, L(+)-TARTARIC ACID
Authors:Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2003-12-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis for Acceptor Substrate Recognition of a Human Glucuronyltransferase, GlcAT-P, an Enzyme Critical in the Biosynthesis of the Carbohydrate Epitope HNK-1
J.Biol.Chem., 279, 2004
1V83
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CRYSTAL STRUCTURE OF HUMAN GLCAT-P IN COMPLEX WITH UDP AND MN2+
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, MANGANESE (II) ION, L(+)-TARTARIC ACID, ...
Authors:Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2003-12-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for Acceptor Substrate Recognition of a Human Glucuronyltransferase, GlcAT-P, an Enzyme Critical in the Biosynthesis of the Carbohydrate Epitope HNK-1
J.Biol.Chem., 279, 2004
1V84
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CRYSTAL STRUCTURE OF HUMAN GLCAT-P IN COMPLEX WITH N-ACETYLLACTOSAMINE, UDP, AND MN2+
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1, BETA-D-GALACTOSE, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, ...
Authors:Kakuda, S., Shiba, T., Ishiguro, M., Tagawa, H., Oka, S., Kajihara, Y., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2003-12-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural Basis for Acceptor Substrate Recognition of a Human Glucuronyltransferase, GlcAT-P, an Enzyme Critical in the Biosynthesis of the Carbohydrate Epitope HNK-1
J.Biol.Chem., 279, 2004
2D0J
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CRYSTAL STRUCTURE OF HUMAN GLCAT-S APO FORM
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
Authors:Shiba, T., Kakuda, S., Ishiguro, M., Oka, S., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2005-08-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope
To be published
2D7I
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CRYSTAL STRUCTURE OF PP-GALNAC-T10 WITH UDP, GALNAC AND MN2+
Descriptor:Polypeptide N-acetylgalactosaminyltransferase 10, N-ACETYL-D-GLUCOSAMINE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Kubota, T., Shiba, T., Sugioka, S., Kato, R., Wakatsuki, S., Narimatsu, H.
Deposit date:2005-11-21
Release date:2006-11-07
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2D7R
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CRYSTAL STRUCTURE OF PP-GALNAC-T10 COMPLEXED WITH GALNAC-SER ON LECTIN DOMAIN
Descriptor:Polypeptide N-acetylgalactosaminyltransferase 10, N-ACETYL-D-GLUCOSAMINE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Kubota, T., Shiba, T., Sugioka, S., Kato, R., Wakatsuki, S., Narimatsu, H.
Deposit date:2005-11-25
Release date:2006-11-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2Z44
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CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELED ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z45
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CRYSTAL STRUCTURE OF ZN-BOUND ORF134
Descriptor:ORF134, ZINC ION
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of ORF134
To be Published
2Z46
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CRYSTAL STRUCTURE OF NATIVE-ORF134
Descriptor:ORF134
Authors:Tomimoto, Y., Ihara, K., Onizuka, T., Kanai, S., Ashida, H., Yokota, A., Tanaka, S., Miyasaka, H., Yamada, Y., Kato, R., Wakatsuki, S.
Deposit date:2007-06-12
Release date:2008-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Crystal Structure of ORF134
To be Published
2ZVN
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NEMO COZI DOMAIN INCOMPLEX WITH DIUBIQUITIN IN P212121 SPACE GROUP
Descriptor:UBC protein, NF-kappa-B essential modulator
Authors:Rahighi, S., Ikeda, F., Kawasaki, M., Akutsu, M., Suzuki, N., Kato, R., Kensche, T., Uejima, T., Bloor, S., Komander, D., Randow, F., Wakatsuki, S., Dikic, I.
Deposit date:2008-11-12
Release date:2009-03-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
2ZVO
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NEMO COZI DOMAIN IN COMPLEX WITH DIUBIQUITIN IN C2 SPACE GROUP
Descriptor:UBC protein, NF-kappa-B essential modulator
Authors:Rahighi, S., Ikeda, F., Kawasaki, M., Akutsu, M., Suzuki, N., Kato, R., Kensche, T., Uejima, T., Bloor, S., Komander, D., Randow, F., Wakatsuki, S., Dikic, I.
Deposit date:2008-11-12
Release date:2009-03-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
3AJ4
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CRYSTAL STRUCTURE OF THE PH DOMAIN OF EVECTIN-2 FROM HUMAN COMPLEXED WITH O-PHOSPHO-L-SERINE
Descriptor:Pleckstrin homology domain-containing family B member 2, PHOSPHOSERINE, 1,2-ETHANEDIOL
Authors:Okazaki, S., Kato, R., Wakatsuki, S.
Deposit date:2010-05-21
Release date:2011-05-25
Last modified:2011-10-05
Method:X-RAY DIFFRACTION (1 Å)
Cite:Intracellular phosphatidylserine is essential for retrograde membrane traffic through endosomes
Proc.Natl.Acad.Sci.USA, 108, 2011
3F89
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NEMO COZI DOMAIN
Descriptor:NF-kappa-B essential modulator
Authors:Rahighi, S., Ikeda, F., Kawasaki, M., Akutsu, M., Suzuki, N., Kato, R., Kensche, T., Uejima, T., Bloor, S., Komander, D., Randow, F., Wakatsuki, S., Dikic, I.
Deposit date:2008-11-11
Release date:2009-03-24
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
3X0W
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CRYSTAL STRUCTURE OF PLEKHM1 LIR-FUSED HUMAN LC3B_2-119
Descriptor:Microtubule-associated proteins 1A/1B light chain 3B
Authors:Suzuki, H., McEwan, D.G., Popovic, D., Gubas, A., Terawaki, S., Stadel, D., Coxon, F., Stegmann, D.M., Bhogaraju, S., Maddi, K., Kirchhoff, A., Gatti, E., Helfrich, M.H., Behrends, C., Pierre, P., Dikic, I., Wakatsuki, S.
Deposit date:2014-10-22
Release date:2015-01-14
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:PLEKHM1 Regulates Autophagosome-Lysosome Fusion through HOPS Complex and LC3/GABARAP Proteins.
Mol.Cell, 2014
6E07
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CRYSTAL STRUCTURE OF CANTON G6PD IN COMPLEX WITH STRUCTURAL NADP
Descriptor:Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION, ...
Authors:Rahighi, S., Mochly-Rosen, D., Wakatsuki, S.
Deposit date:2018-07-06
Release date:2018-07-25
Last modified:2018-10-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Correcting glucose-6-phosphate dehydrogenase deficiency with a small-molecule activator.
Nat Commun, 9, 2018
6E08
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CRYSTAL STRUCTURE OF G6PD IN COMPLEX WITH STRUCTURAL NADP
Descriptor:Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, GLYCEROL
Authors:Rahighi, S., Mochly Rosen, D., Wakatsuki, S.
Deposit date:2018-07-06
Release date:2018-07-25
Last modified:2018-10-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Correcting glucose-6-phosphate dehydrogenase deficiency with a small-molecule activator.
Nat Commun, 9, 2018
6N5M
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CRYSTAL STRUCTURE OF ABIN-1 UBAN IN COMPLEX WITH ONE M1-LINKED DI-UBIQUITIN
Descriptor:Polyubiquitin-C, TNFAIP3-interacting protein 1
Authors:Rahighi, S., Dikic, I., Wakatsuki, S.
Deposit date:2018-11-22
Release date:2019-07-17
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains.
J.Mol.Biol., 2019
6N6R
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CRYSTAL STRUCTURE OF ABIN-1 UBAN IN COMPLEX WITH TWO M1-LINKED DI-UBIQUITINS
Descriptor:Ubiquitin, TNFAIP3-interacting protein 1
Authors:Rahighi, S., Dikic, I., Wakatsuki, S.
Deposit date:2018-11-27
Release date:2019-07-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains.
J.Mol.Biol., 2019
6N6S
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CRYSTAL STRUCTURE OF ABIN-1 UBAN
Descriptor:TNFAIP3-interacting protein 1
Authors:Rahighi, S., Dikic, I., Wakatsuki, S.
Deposit date:2018-11-27
Release date:2019-07-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains.
J.Mol.Biol., 2019
2A6H
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC STERPTOLYDIGIN
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Temiakov, D., Zenkin, N., Vassylyeva, M.N., Perederina, A., Tahirov, T.H., Savkina, M., Zorov, S., Nikiforov, V., Igarashi, N., Matsugaki, N., Wakatsuki, S., Severinov, K., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-02
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of transcription inhibition by antibiotic streptolydigin.
Mol.Cell, 19, 2005
2D3G
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DOUBLE SIDED UBIQUITIN BINDING OF HRS-UIM
Descriptor:ubiquitin, ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase substrate
Authors:Hirano, S., Kawasaki, M., Kato, R., Wakatsuki, S.
Deposit date:2005-09-28
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting
Nat.Struct.Mol.Biol., 13, 2006