Author results

6N5B
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BROADLY PROTECTIVE ANTIBODIES DIRECTED TO A SUBDOMINANT INFLUENZA HEMAGGLUTININ EPITOPE
Descriptor:antibody heavy chain, antibody light chain, Hemagglutinin, ...
Authors:Bajic, G., Maron, M.J., Schmidt, A.G.
Deposit date:2018-11-21
Release date:2019-06-05
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Influenza Antigen Engineering Focuses Immune Responses to a Subdominant but Broadly Protective Viral Epitope.
Cell Host Microbe, 2019
6N5D
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BROADLY PROTECTIVE ANTIBODIES DIRECTED TO A SUBDOMINANT INFLUENZA HEMAGGLUTININ EPITOPE
Descriptor:Hemagglutinin, antibody heavy chain, antibody light chain
Authors:Bajic, G., Schmidt, A.G.
Deposit date:2018-11-21
Release date:2019-06-05
Method:X-RAY DIFFRACTION (3 Å)
Cite:Influenza Antigen Engineering Focuses Immune Responses to a Subdominant but Broadly Protective Viral Epitope.
Cell Host Microbe, 2019
6N5E
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BROADLY PROTECTIVE ANTIBODIES DIRECTED TO A SUBDOMINANT INFLUENZA HEMAGGLUTININ EPITOPE
Descriptor:Hemagglutinin, FL-1066 heavy chain, FL-1066 light chain, ...
Authors:Bajic, G., Schmidt, A.G.
Deposit date:2018-11-21
Release date:2019-06-05
Method:X-RAY DIFFRACTION (3 Å)
Cite:Influenza Antigen Engineering Focuses Immune Responses to a Subdominant but Broadly Protective Viral Epitope.
Cell Host Microbe, 2019
6E4X
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HUMAN ANTIBODY S5V2-29 IN COMPLEX WITH INFLUENZA HEMAGGLUTININ A/TEXAS/50/2012 (H3N2)
Descriptor:Hemagglutinin, S5V2-29 light chain, S5V2-29 heavy chain, ...
Authors:McCarthy, K.R., Harrison, S.C.
Deposit date:2018-07-18
Release date:2019-05-22
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Antibodies to a Conserved Influenza Head Interface Epitope Protect by an IgG Subtype-Dependent Mechanism.
Cell, 177, 2019
6E56
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HUMAN ANTIBODY H2214 IN COMPLEX WITH INFLUENZA HEMAGGLUTININ A/AICHI/2/1968 (X-31) (H3N2)
Descriptor:Hemagglutinin, antibody H2214 heavy chain, antibody H2214 light chain, ...
Authors:McCarthy, K.R., Harrison, S.C.
Deposit date:2018-07-19
Release date:2019-05-22
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Antibodies to a Conserved Influenza Head Interface Epitope Protect by an IgG Subtype-Dependent Mechanism.
Cell, 177, 2019
5ZS9
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SUFS FROM BACILLUS SUBTILIS IN THE RESTING STATE
Descriptor:Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-28
Release date:2019-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSK
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SUFS FROM BACILLUS SUBTILIS SOAKED WITH L-CYSTEINE FOR 63 SEC
Descriptor:Cysteine desulfurase SufS, 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID
Authors:Nakamura, R., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-28
Release date:2019-05-01
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSO
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SUFS FROM BACILLUS SUBTILIS, SOAKED WITH L-CYSTEINE FOR 90 SEC
Descriptor:Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
Authors:Nakamura, R., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSP
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NIFS FROM HYDROGENIMONAS THERMOPHILA
Descriptor:Cysteine desulfurase
Authors:Nakamura, R., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSQ
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NIFS FROM HYDROGENIMONAS THERMOPHILA, SOAKED WITH L-CYSTEINE FOR 4 MIN
Descriptor:Cysteine desulfurase
Authors:Nakamura, R., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Method:X-RAY DIFFRACTION (3.211 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSR
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NIFS FROM HYDROGENIMONAS THERMOPHILA, SOAKED WITH L-CYSTEINE FOR 8 MIN
Descriptor:Cysteine desulfurase
Authors:Nakamura, R., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSS
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L-CYSTEINE-PLP REACTION INTERMEDIATE OF NIFS FROM HYDROGENIMONAS THERMOPHILA
Descriptor:Cysteine desulfurase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
Authors:Nakamura, T., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZST
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NIFS FROM HYDROGENIMONAS THERMOPILE IN A PERSULFURATED FORM
Descriptor:Cysteine desulfurase
Authors:Nakamura, R., Fujishiro, T., Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
6IMU
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THE APO-STRUCTURE OF ENDO-BETA-1,2-GLUCANASE FROM TALAROMYCES FUNICULOSUS
Descriptor:Endo-beta-1,2-glucanase, N-ACETYL-D-GLUCOSAMINE, GLYCEROL, ...
Authors:Tanaka, N., Nakajima, M., Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H., Taguchi, H.
Deposit date:2018-10-23
Release date:2019-04-10
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification, characterization, and structural analyses of a fungal endo-beta-1,2-glucanase reveal a new glycoside hydrolase family.
J.Biol.Chem., 294, 2019
6IMV
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THE COMPLEX STRUCTURE OF ENDO-BETA-1,2-GLUCANASE FROM TALAROMYCES FUNICULOSUS WITH SOPHOROSE
Descriptor:Endo-beta-1,2-glucanase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GLUCOSE, ...
Authors:Tanaka, N., Nakajima, M., Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H., Taguchi, H.
Deposit date:2018-10-23
Release date:2019-04-10
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification, characterization, and structural analyses of a fungal endo-beta-1,2-glucanase reveal a new glycoside hydrolase family.
J.Biol.Chem., 294, 2019
6IMW
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THE COMPLEX STRUCTURE OF ENDO-BETA-1,2-GLUCANASE MUTANT (E262Q) FROM TALAROMYCES FUNICULOSUS WITH BETA-1,2-GLUCAN
Descriptor:Endo-beta-1,2-glucanase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GLUCOSE, ...
Authors:Tanaka, N., Nakajima, M., Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H., Taguchi, H.
Deposit date:2018-10-23
Release date:2019-04-10
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification, characterization, and structural analyses of a fungal endo-beta-1,2-glucanase reveal a new glycoside hydrolase family.
J.Biol.Chem., 294, 2019
6IOP
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THE LIGAND BINDING DOMAIN OF MLP24
Descriptor:Methyl-accepting chemotaxis protein, CALCIUM ION, ACETATE ION, ...
Authors:Sumita, K., Takahashi, Y., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOR
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THE LIGAND BINDING DOMAIN OF MLP24 WITH ASPARAGINE
Descriptor:Methyl-accepting chemotaxis protein, ASPARAGINE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOT
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THE LIGAND BINDING DOMAIN OF MLP24 WITH ARGININE
Descriptor:Methyl-accepting chemotaxis protein, ARGININE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOQ
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THE LIGAND BINDING DOMAIN OF MLP24 WITH GLYCINE
Descriptor:Methyl-accepting chemotaxis protein, GLYCINE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.143 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOS
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THE LIGAND BINDING DOMAIN OF MLP24 WITH PROLINE
Descriptor:Methyl-accepting chemotaxis protein, PROLINE, CALCIUM ION, ...
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOU
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THE LIGAND BINDING DOMAIN OF MLP24 WITH SERINE
Descriptor:Methyl-accepting chemotaxis protein, SERINE, CALCIUM ION, ...
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6AD9
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DIBENZOOXEPINE DERIVATIVE COMPOUND-9
Descriptor:Peroxisome proliferator-activated receptor gamma, 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
Authors:Takahashi, Y., Suzuki, M., Yamamoto, K., Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
5Z06
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CRYSTAL STRUCTURE OF BETA-1,2-GLUCANASE FROM PARABACTEROIDES DISTASONIS
Descriptor:BDI_3064 protein, CALCIUM ION, GLYCEROL
Authors:Shimizu, H., Nakajima, M., Miyanaga, A., Takahashi, Y., Tanaka, N., Kobayashi, K., Sugimoto, N., Nakai, H., Taguchi, H.
Deposit date:2017-12-18
Release date:2018-05-30
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization and Structural Analysis of a Novel exo-Type Enzyme Acting on beta-1,2-Glucooligosaccharides from Parabacteroides distasonis
Biochemistry, 57, 2018
5YSB
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CRYSTAL STRUCTURE OF BETA-1,2-GLUCOOLIGOSACCHARIDE BINDING PROTEIN IN LIGAND-FREE FORM
Descriptor:Lin1841 protein, ZINC ION, DI(HYDROXYETHYL)ETHER
Authors:Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
Deposit date:2017-11-13
Release date:2018-05-02
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018