Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2B5H
DownloadVisualize
BU of 2b5h by Molmil
1.5 A Resolution Crystal Structure of Recombinant R. Norvegicus Cysteine Dioxygenase
Descriptor: Cysteine dioxygenase type I, FE (III) ION
Authors:Simmons, C.R, Liu, Q, Huang, Q, Hao, Q, Begley, T.P, Karplus, P.A, Stipanuk, M.H.
Deposit date:2005-09-28
Release date:2006-04-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Mammalian Cysteine Dioxygenase: A NOVEL MONONUCLEAR IRON CENTER FOR CYSTEINE THIOL OXIDATION.
J.Biol.Chem., 281, 2006
3LTB
DownloadVisualize
BU of 3ltb by Molmil
X-ray structure of a non-biological ATP binding protein determined in the presence of 10 mM ATP at 2.6 A after 3 weeks of incubation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
3LT8
DownloadVisualize
BU of 3lt8 by Molmil
A non-biological ATP binding protein with a single point mutation (D65V), that contributes to optimized folding and ligand binding, crystallized in the presence of 100 mM ATP.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-D65V, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
3LT9
DownloadVisualize
BU of 3lt9 by Molmil
A non-biological ATP binding protein with a single point mutation (D65V), that contributes to optimized folding and ligand binding
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-D65V, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
3LTD
DownloadVisualize
BU of 3ltd by Molmil
X-ray structure of a non-biological ATP binding protein determined at 2.8 A by multi-wavelength anomalous dispersion
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
3LTC
DownloadVisualize
BU of 3ltc by Molmil
X-ray structure of a non-biological ATP binding protein determined in the presence of 10 mM ATP at 2.0 A by multi-wavelength anomalous dispersion
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
3LTA
DownloadVisualize
BU of 3lta by Molmil
Crystal structure of a non-biological ATP binding protein with a TYR-PHE mutation within the ligand binding domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
2GH2
DownloadVisualize
BU of 2gh2 by Molmil
1.5 A Resolution R. Norvegicus Cysteine Dioxygenase Structure Crystallized in the Presence of Cysteine
Descriptor: Cysteine dioxygenase type I, FE (III) ION, SULFATE ION
Authors:Simmons, C.R, Karplus, P.A, Stipanuk, M.H.
Deposit date:2006-03-24
Release date:2006-04-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Mammalian Cysteine Dioxygenase: A NOVEL MONONUCLEAR IRON CENTER FOR CYSTEINE THIOL OXIDATION.
J.Biol.Chem., 281, 2006
3DGO
DownloadVisualize
BU of 3dgo by Molmil
A non-biological ATP binding protein with a Tyr-Phe mutation in the ligand binding domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP Binding Protein-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Allen, J.P, Chaput, J.C.
Deposit date:2008-06-13
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A synthetic protein selected for ligand binding affinity mediates ATP hydrolysis.
Acs Chem.Biol., 4, 2009
3DGM
DownloadVisualize
BU of 3dgm by Molmil
2.4 A Structure of a Non-biological ATP binding protein with ADP bound
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP Binding Protein-DX, DI(HYDROXYETHYL)ETHER, ...
Authors:Simmons, C.R, Allen, J.P, Chaput, J.C.
Deposit date:2008-06-13
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Primordial ATP Binding Protein Generated from Random Sequence Origin
To be Published
3DGN
DownloadVisualize
BU of 3dgn by Molmil
A non-biological ATP binding protein crystallized in the presence of 100 mM ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP Binding Protein-DX, DI(HYDROXYETHYL)ETHER, ...
Authors:Simmons, C.R, Allen, J.P, Chaput, J.C.
Deposit date:2008-06-13
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A synthetic protein selected for ligand binding affinity mediates ATP hydrolysis.
Acs Chem.Biol., 4, 2009
3DGL
DownloadVisualize
BU of 3dgl by Molmil
1.8 A Crystal Structure of a Non-biological Protein with Bound ATP in a Novel Bent Conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP Binding Protein-DX, DI(HYDROXYETHYL)ETHER, ...
Authors:Simmons, C.R, Allen, J.P, Chaput, J.C.
Deposit date:2008-06-13
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A synthetic protein selected for ligand binding affinity mediates ATP hydrolysis.
Acs Chem.Biol., 4, 2009
3ELN
DownloadVisualize
BU of 3eln by Molmil
A Putative Fe2+-bound Persulfenate Intermediate in Cysteine Dioxygenase
Descriptor: Cysteine dioxygenase type 1, FE (II) ION, S-HYDROPEROXYCYSTEINE
Authors:Simmons, C.R, Stipanuk, M.H, Karplus, P.A.
Deposit date:2008-09-22
Release date:2008-10-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:A putative Fe2+-bound persulfenate intermediate in cysteine dioxygenase.
Biochemistry, 47, 2008
5VY7
DownloadVisualize
BU of 5vy7 by Molmil
A self-assembling L-form DNA crystal lattice
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*A)-3'), ...
Authors:Simmons, C.R, Yan, H.
Deposit date:2017-05-24
Release date:2017-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals.
J. Am. Chem. Soc., 139, 2017
5VY6
DownloadVisualize
BU of 5vy6 by Molmil
A self-assembling D-form DNA crystal lattice
Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*A)-3'), ...
Authors:Simmons, C.R, Yan, H.
Deposit date:2017-05-24
Release date:2017-08-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.064 Å)
Cite:Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals.
J. Am. Chem. Soc., 139, 2017
5KEK
DownloadVisualize
BU of 5kek by Molmil
Structure Determination of a Self-Assembling DNA Crystal
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3'), ...
Authors:Simmons, C.R, Birktoft, J.J, Seeman, N.C, Yan, H.
Deposit date:2016-06-09
Release date:2016-08-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.098 Å)
Cite:Construction and Structure Determination of a Three-Dimensional DNA Crystal.
J.Am.Chem.Soc., 138, 2016
5KEO
DownloadVisualize
BU of 5keo by Molmil
Structure Determination of a Self-Assembling DNA Crystal
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3'), ...
Authors:Simmons, C.R, Birktoft, J.J, Seeman, N.C, Yan, H.
Deposit date:2016-06-09
Release date:2016-08-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Construction and Structure Determination of a Three-Dimensional DNA Crystal.
J.Am.Chem.Soc., 138, 2016
8TAM
DownloadVisualize
BU of 8tam by Molmil
Sequence specific (AATT) orientation of Hoechst molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x6)
Descriptor: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, COBALT (II) ION, DNA (5'-D(*GP*AP*GP*AP*AP*TP*TP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*AP*TP*TP*A)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-06-27
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TB4
DownloadVisualize
BU of 8tb4 by Molmil
Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x5)
Descriptor: 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*AP*CP*AP*AP*TP*TP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*TP*GP*T*(DAP))-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-06-28
Release date:2023-12-20
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8T7X
DownloadVisualize
BU of 8t7x by Molmil
Sequence specific (AATT) orientation of DAPI molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x5)
Descriptor: 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, CACODYLATE ION, DNA (5'-D(*GP*AP*GP*AP*AP*TP*TP*CP*CP*TP*GP*AP*CP*GP*AP*CP*AP*AP*TP*TP*A)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-06-21
Release date:2023-12-20
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TA8
DownloadVisualize
BU of 8ta8 by Molmil
Sequence specific (AATT) orientation of netropsin molecules at two unique minor groove binding sites within a self-assembled 3D DNA lattice (4x6)
Descriptor: DNA (5'-D(*GP*AP*GP*AP*AP*TP*TP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*AP*TP*TP*A*(NT)*(NT))-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*TP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*A)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-06-26
Release date:2023-12-20
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TDT
DownloadVisualize
BU of 8tdt by Molmil
Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6)
Descriptor: 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*AP*TP*TP*A)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-07-04
Release date:2023-12-20
Method:X-RAY DIFFRACTION (3.007 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TBO
DownloadVisualize
BU of 8tbo by Molmil
Sequence specific (AATT) orientation of netropsin molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)
Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*CP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-06-29
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.599 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TAQ
DownloadVisualize
BU of 8taq by Molmil
Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x6)
Descriptor: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*AP*TP*TP*A*(HT1))-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*TP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-06-27
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.951 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023
8TB3
DownloadVisualize
BU of 8tb3 by Molmil
Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)
Descriptor: 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, DNA (5'-D(*GP*AP*CP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3'), ...
Authors:Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H.
Deposit date:2023-06-28
Release date:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals.
J.Am.Chem.Soc., 145, 2023

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon