Author results

2D01
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WILD TYPE PHOTOACTIVE YELLOW PROTEIN, P65 FORM
Descriptor:Photoactive yellow protein, 4'-HYDROXYCINNAMIC ACID
Authors:Shimizu, N., Kamikubo, H., Yamazaki, Y., Imamoto, Y., Kataoka, M.
Deposit date:2005-07-21
Release date:2006-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
2D02
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R52Q MUTANT OF PHOTOACTIVE YELLOW PROTEIN, P65 FORM
Descriptor:Photoactive yellow protein, 4'-HYDROXYCINNAMIC ACID
Authors:Shimizu, N., Kamikubo, H., Yamazaki, Y., Imamoto, Y., Kataoka, M.
Deposit date:2005-07-21
Release date:2006-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
5B2C
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CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE
Descriptor:HN protein, N-ACETYL-D-GLUCOSAMINE, SULFATE ION
Authors:Kubota, M., Takeuchi, K., Watanabe, S., Ohno, S., Matsuoka, R., Kohda, D., Hiramatsu, H., Suzuki, Y., Nakayama, T., Terada, T., Shimizu, K., Shimizu, N., Yanagi, Y., Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2016-10-26
Method:X-RAY DIFFRACTION (2.238 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
5B2D
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CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE BOUND TO 3-SIALYLLACTOSE
Descriptor:HN protein, N-ACETYL-D-GLUCOSAMINE, 5-(ACETYLAMINO)-3,5-DIDEOXYNON-2-ULOPYRANONOSYL-(2->3)-BETA-D-LYXO-HEXOPYRANOSYL-(1->4)HEXOPYRANOSE, ...
Authors:Kubota, M., Takeuchi, K., Watanabe, S., Ohno, S., Matsuoka, R., Kohda, D., Hiramatsu, H., Suzuki, Y., Nakayama, T., Terada, T., Shimizu, K., Shimizu, N., Yanagi, Y., Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2016-10-26
Method:X-RAY DIFFRACTION (2.177 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
3AH7
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CRYSTAL STRUCTURE OF THE ISC-LIKE [2FE-2S] FERREDOXIN (FDXB) FROM PSEUDOMONAS PUTIDA JCM 20004
Descriptor:[2Fe-2S]ferredoxin, FE2/S2 (INORGANIC) CLUSTER, SODIUM ION, ...
Authors:Kumasaka, T., Shimizu, N., Ohmori, D., Iwasaki, T.
Deposit date:2010-04-20
Release date:2011-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004
To be Published
2ISM
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CRYSTAL STRUCTURE OF THE PUTATIVE OXIDOREDUCTASE (GLUCOSE DEHYDROGENASE) (TTHA0570) FROM THERMUS THEROMOPHILUS HB8
Descriptor:Putative oxidoreductase, CALCIUM ION, CHLORIDE ION
Authors:Jeyakanthan, J., Kanaujia, S.P., Vasuki Ranjani, C., Sekar, K., Ebihara, A., Shinkai, A., Nakagawa, N., Shimizu, N., Yamamoto, M., Kuramitsu, S., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-18
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the Putative Oxidoreductase (Glucose Dehydrogenase) (TTHA0570) from Thermus Theromophilus HB8
To be Published
2D3T
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM V
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Tsuchiya, D., Shimizu, N., Ishikawa, M., Suzuki, Y., Morikawa, K.
Deposit date:2005-10-01
Release date:2006-02-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Ligand-Induced Domain Rearrangement of Fatty Acid beta-Oxidation Multienzyme Complex
Structure, 14, 2006
2Z5P
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APO-FR WITH LOW CONTENT OF PD IONS
Descriptor:Ferritin light chain, PALLADIUM ION, CADMIUM ION, ...
Authors:Ueno, T., Hirata, K., Abe, M., Suzuki, M., Abe, S., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
Deposit date:2007-07-16
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
2Z5Q
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APO-FR WITH INTERMEDIATE CONTENT OF PD ION
Descriptor:Ferritin light chain, PALLADIUM ION, CADMIUM ION, ...
Authors:Ueno, T., Hirata, K., Abe, M., Suzuki, M., Abe, S., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
Deposit date:2007-07-16
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
2Z5R
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APO-FR WITH HIGH CONTENT OF PD IONS
Descriptor:Ferritin light chain, PALLADIUM ION, CADMIUM ION
Authors:Ueno, T., Hirata, K., Abe, M., Suzuki, M., Abe, S., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
Deposit date:2007-07-16
Release date:2008-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
2ZUR
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CRYSTAL STRUCTURE OF RH(NBD)/APO-FR
Descriptor:Ferritin light chain, CADMIUM ION, SULFATE ION, ...
Authors:Abe, S., Hirata, K., Ueno, T., Shimizu, N., Yamamoto, M., Takata, M., Watanabe, Y.
Deposit date:2008-10-28
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Polymerization of phenylacetylene by rhodium complexes within a discrete space of apo-ferritin
J.Am.Chem.Soc., 131, 2009
3AB7
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CRYSTAL STRUCTURE OF THE HYPOTHETICAL TANDEM-TYPE UNIVERSAL STRESS PROTEIN TTHA0350 FROM THERMUS THERMOPHILUS HB8
Descriptor:Putative uncharacterized protein TTHA0350
Authors:Goto, M., Iino, H., Shimizu, N., Kuramitsu, S.
Deposit date:2009-12-01
Release date:2010-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8
To be Published
3AB8
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CRYSTAL STRUCTURE OF THE HYPOTHETICAL TANDEM-TYPE UNIVERSAL STRESS PROTEIN TTHA0350 COMPLEXED WITH ATPS.
Descriptor:Putative uncharacterized protein TTHA0350, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Goto, M., Iino, H., Shimizu, N., Kuramitsu, S.
Deposit date:2009-12-01
Release date:2010-12-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8
To be Published
3FI6
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APO-H49AFR WITH HIGH CONTENT OF PD IONS
Descriptor:Ferritin light chain, PALLADIUM ION, CADMIUM ION, ...
Authors:Abe, M., Ueno, T., Hirata, K., Suzuki, M., Abe, S., Shimizu, N., Yamaoto, M., Takata, M., Watanabe, Y.
Deposit date:2008-12-11
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Process of Accumulation of Metal Ions on the Interior Surface of apo-Ferritin: Crystal Structures of a Series of apo-Ferritins Containing Variable Quantities of Pd(II) Ions
J.Am.Chem.Soc., 131, 2009
3W40
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CRYSTAL STRUCTURE OF RSBX IN COMPLEX WITH MAGNESIUM IN SPACE GROUP P1
Descriptor:Phosphoserine phosphatase RsbX, MAGNESIUM ION
Authors:Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.
Deposit date:2013-01-04
Release date:2014-01-22
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis
Acta Crystallogr.,Sect.D, 71, 2015
3W41
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CRYSTAL STRUCTURE OF RSBX IN COMPLEX WITH MAGNESIUM IN SPACE GROUP P21
Descriptor:Phosphoserine phosphatase RsbX, MAGNESIUM ION
Authors:Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.
Deposit date:2013-01-04
Release date:2014-01-22
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis
Acta Crystallogr.,Sect.D, 71, 2015
3W42
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CRYSTAL STRUCTURE OF RSBX IN COMPLEX WITH MANGANESE IN SPACE GROUP P1
Descriptor:Phosphoserine phosphatase RsbX, MANGANESE (II) ION
Authors:Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.
Deposit date:2013-01-04
Release date:2014-01-22
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis
Acta Crystallogr.,Sect.D, 71, 2015
3W43
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CRYSTAL STRUCTURE OF RSBX IN COMPLEX WITH MANGANESE IN SPACE GROUP P21
Descriptor:Phosphoserine phosphatase RsbX, MANGANESE (II) ION
Authors:Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.
Deposit date:2013-01-04
Release date:2014-01-22
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis
Acta Crystallogr.,Sect.D, 71, 2015
3W44
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CRYSTAL STRUCTURE OF RSBX, SELENOMETHIONINE DERIVATIVE
Descriptor:Phosphoserine phosphatase RsbX, MANGANESE (II) ION, DI(HYDROXYETHYL)ETHER
Authors:Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.
Deposit date:2013-01-04
Release date:2014-01-22
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis
Acta Crystallogr.,Sect.D, 71, 2015
3W45
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CRYSTAL STRUCTURE OF RSBX IN COMPLEX WITH COBALT IN SPACE GROUP P1
Descriptor:Phosphoserine phosphatase RsbX, COBALT (II) ION
Authors:Makino, M., Teh, A.H., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.
Deposit date:2013-01-04
Release date:2014-01-22
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis
Acta Crystallogr.,Sect.D, 71, 2015
5HP5
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SRTUCTURE OF HUMAN PEPTIDYLARGININE DEIMINASE TYPE I (PAD1)
Descriptor:Protein-arginine deiminase type-1, CALCIUM ION
Authors:Unno, M., Nagai, A., Saijo, S., Shimizu, N., Kinjo, S., Mashimo, R., Kizawa, K., Takahara, H.
Deposit date:2016-01-20
Release date:2016-07-27
Last modified:2016-08-17
Method:X-RAY DIFFRACTION (3.198 Å)
Cite:Monomeric Form of Peptidylarginine Deiminase Type I Revealed by X-ray Crystallography and Small-Angle X-ray Scattering
J.Mol.Biol., 428, 2016
5XA7
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COMPLETE STRUCTURE FACTORS AND AN ATOMIC MODEL OF THE CALCIUM PUMP (SERCA1A) AND ASSOCIATED PHOSPHOLIPIDS IN THE E1-2CA2+ CRYSTALS
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, CALCIUM ION, SODIUM ION, ...
Authors:Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-05-17
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
5XA8
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COMPLETE STRUCTURE FACTORS AND AN ATOMIC MODEL OF THE CALCIUM PUMP (SERCA1A) AND ASSOCIATED PHOSPHOLIPIDS IN THE E1-ALF4-ADP-2CA2+ CRYSTALS
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, CALCIUM ION, MAGNESIUM ION, ...
Authors:Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-05-17
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
5XA9
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COMPLETE STRUCTURE FACTORS AND AN ATOMIC MODEL OF THE CALCIUM PUMP (SERCA1A) AND ASSOCIATED PHOSPHOLIPIDS IN THE E2-ALF-(TG) CRYSTALS OF C2 SYMMETRY
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, MAGNESIUM ION, TETRAFLUOROALUMINATE ION, ...
Authors:Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-06-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
5XAA
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COMPLETE STRUCTURE FACTORS AND AN ATOMIC MODEL OF THE CALCIUM PUMP (SERCA1A) AND ASSOCIATED PHOSPHOLIPIDS IN THE E2-ALF-(TG) CRYSTALS OF P21212 SYMMETRY
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, MAGNESIUM ION, TETRAFLUOROALUMINATE ION, ...
Authors:Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-05-24
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
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