Author results

1EZW
  • Download 1ezw
  • View 1ezw
Molmil generated image of 1ezw
STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOPYRUS KANDLERI
分子名称:COENZYME F420-DEPENDENT N5,N10-METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE, MAGNESIUM ION, CHLORIDE ION
著者Shima, S., Warkentin, E., Grabarse, W., Thauer, R.K., Ermler, U.
登録日2000-05-12
公開日2000-09-06
最終更新日2011-11-16
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure of coenzyme F(420) dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea.
J.Mol.Biol., 300, 2000
1F07
  • Download 1f07
  • View 1f07
Molmil generated image of 1f07
STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
分子名称:COENZYME F420-DEPENDENT N5,N10-METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
著者Shima, S., Warkentin, E., Grabarse, W., Thauer, R.K., Ermler, U.
登録日2000-05-15
公開日2000-09-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of coenzyme F(420) dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea.
J.Mol.Biol., 300, 2000
3SQG
  • Download 3sqg
  • View 3sqg
Molmil generated image of 3sqg
CRYSTAL STRUCTURE OF A METHYL-COENZYME M REDUCTASE PURIFIED FROM BLACK SEA MATS
分子名称:Methyl coenzyme M reductase, alpha subunit, Methyl-coenzyme M reductase, ...
著者Shima, S., Krueger, M., Weinert, T., Demmer, U., Thauer, R.K., Ermler, U.
登録日2011-07-05
公開日2011-11-30
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically.
Nature, 481, 2011
3DAF
  • Download 3daf
  • View 3daf
Molmil generated image of 3daf
THE CRYSTAL STRUCTURE OF [FE]-HYDROGENASE HOLOENZYME (HMD) FROM METHANOCALDOCOCCUS JANNASCHII COCRYSTALLIZED WITH CYANIDE
分子名称:5,10-methenyltetrahydromethanopterin hydrogenase, PHOSPHATE ION, FE (II) ION, ...
著者Pilak, O., Warkentin, E., Shima, S., Thauer, R.K., Ermler, U.
登録日2008-05-29
公開日2008-12-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site.
Science, 321, 2008
3DAG
  • Download 3dag
  • View 3dag
Molmil generated image of 3dag
THE CRYSTAL STRUCTURE OF [FE]-HYDROGENASE HOLOENZYME (HMD) FROM METHANOCALDOCOCCUS JANNASCHII
分子名称:5,10-methenyltetrahydromethanopterin hydrogenase, FE (II) ION, 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, ...
著者Pilak, O., Warkentin, E., Shima, S., Thauer, R.K., Ermler, U.
登録日2008-05-29
公開日2008-12-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site.
Science, 321, 2008
1U6I
  • Download 1u6i
  • View 1u6i
Molmil generated image of 1u6i
THE STRUCTURE OF NATIVE COENZYME F420-DEPENDENT METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE AT 2.2A RESOLUTION
分子名称:F420-dependent methylenetetrahydromethanopterin dehydrogenase, MAGNESIUM ION
著者Warkentin, E., Hagemeier, C.H., Shima, S., Thauer, R.K., Ermler, U.
登録日2004-07-30
公開日2005-02-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure.
Acta Crystallogr.,Sect.D, 61, 2005
1U6J
  • Download 1u6j
  • View 1u6j
Molmil generated image of 1u6j
THE STRUCTURE OF NATIVE COENZYME F420-DEPENDENT METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE AT 2.4A RESOLUTION
分子名称:F420-dependent methylenetetrahydromethanopterin dehydrogenase, MAGNESIUM ION
著者Warkentin, E., Hagemeier, C.H., Shima, S., Thauer, R.K., Ermler, U.
登録日2004-07-30
公開日2005-02-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure.
Acta Crystallogr.,Sect.D, 61, 2005
1U6K
  • Download 1u6k
  • View 1u6k
Molmil generated image of 1u6k
TLS REFINEMENT OF THE STRUCTURE OF SE-METHIONINE LABELLED COENZYME F420-DEPENDENT METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE (MTD) FROM METHANOPYRUS KANDLERI
分子名称:F420-dependent methylenetetrahydromethanopterin dehydrogenase, MAGNESIUM ION
著者Warkentin, E., Hagemeier, C.H., Shima, S., Thauer, R.K., Ermler, U.
登録日2004-07-30
公開日2005-02-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure.
Acta Crystallogr.,Sect.D, 61, 2005
3F47
  • Download 3f47
  • View 3f47
Molmil generated image of 3f47
THE CRYSTAL STRUCTURE OF [FE]-HYDROGENASE (HMD) HOLOENZYME FROM METHANOCALDOCOCCUS JANNASCHII
分子名称:5,10-methenyltetrahydromethanopterin hydrogenase, 5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine, FE (II) ION, ...
著者Hiromoto, T., Pilak, O., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.
登録日2008-10-31
公開日2009-02-10
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.
Febs Lett., 583, 2009
6FRM
  • Download 6frm
  • View 6frm
Molmil generated image of 6frm
CRYSTAL STRUCTURE OF COENZYME F420H2 OXIDASE (FPRA) CO-CRYSTALLIZED WITH 10 MM TB-XO4
分子名称:Coenzyme F420H2 oxidase (FprA), FLAVIN MONONUCLEOTIDE, Tb-Xo4, ...
著者Engilberge, S., Riobe, F., Wagner, T., Di Pietro, S., Shima, S., Girard, E., Dumont, E., Maury, O.
登録日2018-02-16
公開日2018-10-31
最終更新日2019-05-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
6FRN
  • Download 6frn
  • View 6frn
Molmil generated image of 6frn
STRUCTURE OF F420H2 OXIDASE (FPRA) CO-CRYSTALLIZED WITH 10MM TB-XO4 AND CALCIUM CHLORIDE
分子名称:F420H2 oxidase (FprA), FLAVIN MONONUCLEOTIDE, CALCIUM ION, ...
著者Engilberge, S., Riobe, F., Di Pietro, S., Wagner, T., Shima, S., Girard, E., Dumont, E., Maury, O.
登録日2018-02-16
公開日2018-10-03
最終更新日2019-05-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
6FRQ
  • Download 6frq
  • View 6frq
Molmil generated image of 6frq
STRUCTURE OF TETRAGONAL HEN EGG-WHITE LYSOZYME CO-CRYSTALLIZED IN PRESENCE OF 100 MM TB-XO4 AND 100 MM POTASSIUM SODIUM TARTRATE TETRAHYDRATE.
分子名称:Lysozyme C, TERBIUM(III) ION, CHLORIDE ION
著者Engilberge, S., Riobe, F., Di Pietro, S., Wagner, T., Shima, S., Girard, E., Dumont, E., Maury, O.
登録日2018-02-16
公開日2018-10-03
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
1JAX
  • Download 1jax
  • View 1jax
Molmil generated image of 1jax
STRUCTURE OF COENZYME F420H2:NADP+ OXIDOREDUCTASE (FNO)
分子名称:conserved hypothetical protein, SODIUM ION, MAGNESIUM ION
著者Warkentin, E., Mamat, B., Thauer, R., Ermler, U., Shima, S.
登録日2001-06-01
公開日2001-12-21
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.
EMBO J., 20, 2001
1JAY
  • Download 1jay
  • View 1jay
Molmil generated image of 1jay
STRUCTURE OF COENZYME F420H2:NADP+ OXIDOREDUCTASE (FNO) WITH ITS SUBSTRATES BOUND
分子名称:Coenzyme F420H2:NADP+ Oxidoreductase (FNO), SODIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Warkentin, E., Mamat, B., Thauer, R., Ermler, U., Shima, S.
登録日2001-06-01
公開日2001-12-21
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.
EMBO J., 20, 2001
1TXG
  • Download 1txg
  • View 1txg
Molmil generated image of 1txg
STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS
分子名称:glycerol-3-phosphate dehydrogenase [NAD(P)+], SULFATE ION, GLYCEROL, ...
著者Sakasegawa, S., Hagemeier, C.H., Thauer, R.K., Essen, L.O., Shima, S.
登録日2004-07-05
公開日2004-12-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP+ preference
Protein Sci., 13, 2004
2B0J
  • Download 2b0j
  • View 2b0j
Molmil generated image of 2b0j
THE CRYSTAL STRUCTURE OF THE APOENZYME OF THE IRON-SULFUR-CLUSTER-FREE HYDROGENASE (HMD)
分子名称:5,10-methenyltetrahydromethanopterin hydrogenase
著者Pilak, O., Mamat, B., Vogt, S., Hagemeier, C.H., Thauer, R.K., Shima, S., Vonrhein, C., Warkentin, E., Ermler, U.
登録日2005-09-14
公開日2006-04-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The Crystal Structure of the Apoenzyme of the Iron-Sulphur Cluster-free Hydrogenase
J.Mol.Biol., 358, 2006
3F46
  • Download 3f46
  • View 3f46
Molmil generated image of 3f46
THE CRYSTAL STRUCTURE OF C176A MUTATED [FE]-HYDROGENASE (HMD) HOLOENZYME FROM METHANOCALDOCOCCUS JANNASCHII
分子名称:5,10-methenyltetrahydromethanopterin hydrogenase, 5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine, FE (II) ION, ...
著者Hiromoto, T., Vogt, S., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.
登録日2008-10-31
公開日2009-02-10
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.
Febs Lett., 583, 2009
3ZFS
  • Download 3zfs
  • View 3zfs
Molmil generated image of 3zfs
CRYO-EM STRUCTURE OF THE F420-REDUCING NIFE-HYDROGENASE FROM A METHANOGENIC ARCHAEON WITH BOUND SUBSTRATE
分子名称:F420-REDUCING HYDROGENASE, SUBUNIT ALPHA, SUBUNIT GAMMA, ...
著者Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.
登録日2012-12-12
公開日2013-03-06
最終更新日2017-08-23
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献De Novo Modeling of the F420-Reducing [Nife]-Hydrogenase from a Methanogenic Archaeon by Cryo-Electron Microscopy
Elife, 2, 2013
4OMF
  • Download 4omf
  • View 4omf
Molmil generated image of 4omf
THE F420-REDUCING [NIFE]-HYDROGENASE COMPLEX FROM METHANOTHERMOBACTER MARBURGENSIS, THE FIRST X-RAY STRUCTURE OF A GROUP 3 FAMILY MEMBER
分子名称:F420-reducing hydrogenase, subunit gamma, subunit alpha, ...
著者Vitt, S., Ma, K., Warkentin, E., Moll, J., Pierik, A., Shima, S., Ermler, U.
登録日2014-01-27
公開日2014-06-11
最終更新日2018-06-20
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献The F420-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member.
J.Mol.Biol., 426, 2014
6EQO
  • Download 6eqo
  • View 6eqo
Molmil generated image of 6eqo
TRI-FUNCTIONAL PROPIONYL-COA SYNTHASE OF ERYTHROBACTER SP. NAP1 WITH BOUND NADP+ AND PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
分子名称:Acetyl-coenzyme A synthetase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Zarzycki, J., Bernhardsgruetter, I., Voegeli, B., Wagner, T., Engilberge, S., Girard, E., Shima, S., Erb, T.J.
登録日2017-10-13
公開日2018-10-24
最終更新日2018-11-28
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite.
Nat. Chem. Biol., 14, 2018
6ESQ
  • Download 6esq
  • View 6esq
Molmil generated image of 6esq
STRUCTURE OF THE ACETOACETYL-COA THIOLASE/HMG-COA SYNTHASE COMPLEX FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS SOAKED WITH ACETYL-COA
分子名称:acetoacetyl-CoA thiolase, Pfam DUF35, HydroxyMethylGlutaryl-CoA synthase, ...
著者Voegeli, B., Engilberge, S., Girard, E., Riobe, F., Maury, O., Erb, J.T., Shima, S., Wagner, T.
登録日2017-10-24
公開日2018-03-14
最終更新日2018-04-11
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6ET9
  • Download 6et9
  • View 6et9
Molmil generated image of 6et9
STRUCTURE OF THE ACETOACETYL-COA-THIOLASE/HMG-COA-SYNTHASE COMPLEX FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS AT 2.75 A
分子名称:Acetyl-CoA acetyltransferase thiolase, Pfam DUF35, HydroxyMethylGlutaryl-CoA synthase, ...
著者Engilberge, S., Voegeli, B., Girard, E., Riobe, F., Maury, O., Erb, T.J., Shima, S., Wagner, T.
登録日2017-10-25
公開日2018-03-14
最終更新日2018-04-11
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6HF6
  • Download 6hf6
  • View 6hf6
Molmil generated image of 6hf6
CRYSTAL STRUCTURE OF THE PROTEASE 1 (E29A,E60A,E80A) FROM PYROCOCCUS HORIKOSHII CO-CRYSTALLIZED WITH TB-XO4.
分子名称:Deglycase PH1704, Tb-Xo4, MALONATE ION, ...
著者Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.
登録日2018-08-21
公開日2019-06-19
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the Protease 1 (E29A,E60A,E80A) from Pyrococcus horikoshii co-crystallized with Tb-Xo4.
J.Appl.Crystallogr., 2019
6HF7
  • Download 6hf7
  • View 6hf7
Molmil generated image of 6hf7
CRYSTAL STRUCTURE OF THE ADENYLATE KINASE FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS CO-CRYSTALLIZED WITH TB-XO4
分子名称:Adenylate kinase, Tb-Xo4, TERBIUM(III) ION, ...
著者Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.
登録日2018-08-21
公開日2019-06-19
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of the adenylate kinase from Methanothermococcus thermolithotrophicus co-crystallized with Tb-Xo4
J.Appl.Crystallogr., 2019
6HK1
  • Download 6hk1
  • View 6hk1
Molmil generated image of 6hk1
CRYSTAL STRUCTURE OF THE THIAZOLE SYNTHASE FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS CO-CRYSTALLIZED WITH TB-XO4
分子名称:Thiazole synthase, TERBIUM(III) ION, [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R)-2,3,5-tris(oxidanyl)-4-oxidanylidene-pentyl] hydrogen phosphate, ...
著者Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.
登録日2018-09-05
公開日2019-06-19
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of the Thiazole synthase from Methanothermococcus thermolithotrophicus co-crystallized with Tb-Xo4
J.Appl.Crystallogr., 2019