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1VJ4
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SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C)
Descriptor:5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3'
Authors:Shakked, Z., Rabinovich, D., Kennard, O., Cruse, W.B., Salisbury, S.A., Viswamitra, M.A.
Deposit date:1989-01-11
Release date:1989-01-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sequence-dependent conformation of an A-DNA double helix: The crystal structure of the octamer d(G-G-T-A-T-A-C-C)
J.Mol.Biol., 166, 1983
2D94
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THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT
Descriptor:DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3')
Authors:Shakked, Z., Guerstein-Guzikevich, G., Eisenstein, M., Frolow, F., Rabinovich, D.
Deposit date:1993-07-13
Release date:1994-01-15
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The conformation of the DNA double helix in the crystal is dependent on its environment.
Nature, 342, 1989
1VT8
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CRYSTAL STRUCTURE OF D(GGGCGCCC)-HEXAGONAL FORM
Descriptor:DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3')
Authors:Shakked, Z., Guerstein-Guzikevich, G., Eisenstein, M., Frolow, F., Rabinovich, D.
Deposit date:1996-12-02
Release date:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The conformation of the DNA double helix in the crystal is dependent on its environment.
Nature, 342, 1989
1VTR
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STRUCTURE OF THE DEOXYTETRANUCLEOTIDE D-PAPTPAPT AND A SEQUENCE-DEPENDENT MODEL FOR POLY(DA-DT)
Descriptor:DNA (5'-D(*AP*TP*AP*T)-3')
Authors:Viswamitra, M.A., Shakked, Z., Jones, P.G., Sheldrick, G.M., Salisbury, S.A., Kennard, O.
Deposit date:1988-08-18
Release date:2011-07-13
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Structure of the Deoxytetranucleotide d-pApTpApT and a Sequence-Dependent Model for Poly(dA-dT)
Biopolymers, 21, 1982
115D
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ORDERED WATER STRUCTURE IN AN A-DNA OCTAMER AT 1.7 ANGSTROMS RESOLUTION
Descriptor:DNA (5'-D(*GP*GP*(BRU)P*AP*(BRU)P*AP*CP*C)-3')
Authors:Kennard, O., Cruse, W.B.T., Nachman, J., Prange, T., Shakked, Z., Rabinovich, D.
Deposit date:1993-02-12
Release date:1993-07-15
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ordered water structure in an A-DNA octamer at 1.7 A resolution.
J.Biomol.Struct.Dyn., 3, 1986
187D
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HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION
Descriptor:DNA (5'-D(*CP*CP*CP*CP*GP*GP*GP*G)-3')
Authors:Eisenstein, M., Shakked, Z.
Deposit date:1994-09-02
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.
J.Mol.Biol., 248, 1995
188D
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HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION
Descriptor:DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3')
Authors:Eisenstein, M., Shakked, Z.
Deposit date:1994-09-02
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.
J.Mol.Biol., 248, 1995
2D95
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LOW-TEMPERATURE STUDY OF THE A-DNA FRAGMENT D(GGGCGCCC)
Descriptor:DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3')
Authors:Eisenstein, M., Hope, H., Haran, T.E., Frolow, F., Shakked, Z., Rabinovich, D.
Deposit date:1993-07-13
Release date:1994-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Low-temperature study of the A-DNA fragment d(GGGCGCCC)
ACTA CRYSTALLOGR.,SECT.B, 44, 1988
189D
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HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION
Descriptor:DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3')
Authors:Eisenstein, M., Shakked, Z.
Deposit date:1994-09-02
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.
J.Mol.Biol., 248, 1995
1ILC
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DNA BENDING BY AN ADENINE-THYMINE TRACT AND ITS ROLE IN GENE REGULATION.
Descriptor:5'-D(*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*T)-3'
Authors:Hizver, J., Rozenberg, H., Frolow, F., Rabinovich, D., Shakked, Z.
Deposit date:2001-05-08
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:DNA bending by an adenine--thymine tract and its role in gene regulation.
Proc.Natl.Acad.Sci.USA, 98, 2001
1LJM
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DNA RECOGNITION IS MEDIATED BY CONFORMATIONAL TRANSITION AND BY DNA BENDING
Descriptor:RUNX1 transcription factor, CHLORIDE ION
Authors:Bartfeld, D., Shimon, L., Couture, G.C., Rabinovich, D., Frolow, F., Levanon, D., Groner, Y., Shakked, Z.
Deposit date:2002-04-22
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:DNA Recognition by the RUNX1 Transcription Factor Is Mediated by an Allosteric Transition in the RUNT Domain and by DNA Bending.
Structure, 10
1VT5
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THE CRYSTAL STRUCTURE OF D(CCCCGGGG): A NEW A-FORM VARIANT WITH AN EXTENDED BACKBONE CONFORMATION
Descriptor:DNA (5'-D(*CP*CP*CP*CP*GP*GP*GP*G)-3')
Authors:Haran, T.E., Shakked, Z., Wang, A.H.-J., Rich, A.
Deposit date:1988-08-18
Release date:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The crystal structure of d(CCCCGGGG): a new A-form variant with an extended backbone conformation.
J.Biomol.Struct.Dyn., 5, 1987
1VT7
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STRUCTURES OF THE MISMATCHED DUPLEX D(GGGTGCCC)
Descriptor:DNA (5'-D(*GP*GP*GP*TP*GP*CP*CP*C)-3')
Authors:Rabinovich, D., Haran, T., Eisenstein, M., Shakked, Z.
Deposit date:1996-12-02
Release date:2011-07-13
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the mismatched duplex d(GGGTGCCC) and one of its Watson-Crick analogues d(GGGCGCCC).
J.Mol.Biol., 200, 1988
1VT9
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THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATURE
Descriptor:DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*C)-3')
Authors:Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich, D.
Deposit date:1991-04-11
Release date:2011-07-13
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure and hydration of the A-DNA fragment d(GGGTACCC) at room temperature and low temperature.
Nucleic Acids Res., 18, 1990
1VTA
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THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATURE
Descriptor:DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*C)-3')
Authors:Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich, D.
Deposit date:1991-04-11
Release date:2011-07-13
Last modified:2013-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure and hydration of the A-DNA fragment d(GGGTACCC) at room temperature and low temperature.
Nucleic Acids Res., 18, 1990
1XJX
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THE CRYSTAL STRUCTURES OF THE DNA BINDING SITES OF THE RUNX1 TRANSCRIPTION FACTOR
Descriptor:5'-D(*TP*CP*TP*GP*CP*GP*GP*TP*C)-3', 5'-D(*TP*GP*AP*CP*CP*GP*CP*AP*G)-3'
Authors:Kitayner, M., Rozenberg, H., Rabinovich, D., Shakked, Z.
Deposit date:2004-09-26
Release date:2005-03-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of the DNA-binding site of Runt-domain transcription regulators.
Acta Crystallogr.,Sect.D, 61, 2005
1XJY
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THE CRYSTAL STRUCTURES OF THE DNA BINDING SITES OF THE RUNX1 TRANSCRIPTION FACTOR
Descriptor:5'-D(*TP*CP*TP*GP*CP*GP*GP*TP*C)-3', 5'-D(*TP*GP*AP*CP*CP*GP*CP*AP*G)-3'
Authors:Kitayner, M., Rozenberg, H., Rabinovich, D., Shakked, Z.
Deposit date:2004-09-26
Release date:2005-03-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the DNA-binding site of Runt-domain transcription regulators.
Acta Crystallogr.,Sect.D, 61, 2005
285D
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X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE
Descriptor:DNA (5'-D(*CP*GP*CP*AP*IP*AP*TP*(5CM)P*TP*GP*CP*G)-3')
Authors:Shatzky-Schwartz, M., Shakked, Z., Luisi, B.F.
Deposit date:1996-09-11
Release date:1997-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature.
J.Mol.Biol., 267, 1997
286D
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X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE
Descriptor:DNA (5'-D(*CP*CP*IP*IP*IP*CP*CP*CP*GP*G)-3')
Authors:Shatzky-Schwartz, M., Shakked, Z., Luisi, B.F.
Deposit date:1996-09-16
Release date:1997-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature.
J.Mol.Biol., 267, 1997
287D
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X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3')
Authors:Eisenstein, M., Shatzky-Schwartz, M., Shakked, Z.
Deposit date:1996-09-20
Release date:1997-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature.
J.Mol.Biol., 267, 1997
2AC0
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STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS (COMPLEX I)
Descriptor:5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3', Cellular tumor antigen p53, ZINC ION
Authors:Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.
Deposit date:2005-07-18
Release date:2006-07-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of DNA Recognition by p53 Tetramers
Mol.Cell, 22, 2006
2ADY
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STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS (COMPLEX IV)
Descriptor:5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3', Cellular tumor antigen p53, ZINC ION
Authors:Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.
Deposit date:2005-07-21
Release date:2006-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of DNA Recognition by p53 Tetramers
Mol.Cell, 22, 2006
2AHI
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STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS (COMPLEX III)
Descriptor:5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3', Cellular tumor antigen p53, ZINC ION
Authors:Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.
Deposit date:2005-07-28
Release date:2006-07-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis of DNA Recognition by p53 Tetramers
Mol.Cell, 22, 2006
2ATA
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STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS (COMPLEX II)
Descriptor:5'-D(*AP*AP*GP*GP*CP*AP*TP*GP*CP*CP*TP*T)-3', Cellular tumor antigen p53, ZINC ION
Authors:Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.
Deposit date:2005-08-24
Release date:2006-07-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis of DNA Recognition by p53 Tetramers
Mol.Cell, 22, 2006
3D05
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HUMAN P53 CORE DOMAIN WITH HOT SPOT MUTATION R249S (II)
Descriptor:Cellular tumor antigen p53, ZINC ION
Authors:Suad, O., Rozenberg, H., Shimon, L.J.W., Frolow, F., Shakked, Z.
Deposit date:2008-05-01
Release date:2009-01-20
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations
J.Mol.Biol., 385, 2009
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