Author results

1TRJ
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HOMOLOGY MODEL OF YEAST RACK1 PROTEIN FITTED INTO 11.7A CRYO-EM MAP OF YEAST 80S RIBOSOME
Descriptor:Helix 39 of 18S rRNA, Helix 40 of 18S rRNA, Guanine nucleotide-binding protein beta subunit-like protein
Authors:Sengupta, J., Nilsson, J., Gursky, R., Spahn, C.M., Nissen, P., Frank, J.
Deposit date:2004-06-21
Release date:2004-09-28
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM
Nat.Struct.Mol.Biol., 11, 2004
3DNY
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FITTING OF THE EEF2 CRYSTAL STRUCTURE INTO THE CRYO-EM DENSITY MAP OF THE EEF2.80S.ALF4-.GDP COMPLEX
Descriptor:Elongation factor 2
Authors:Sengupta, J., Frank, J.
Deposit date:2008-07-03
Release date:2008-08-05
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12.6 Å)
Cite:Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy.
J.Mol.Biol., 382, 2008
1ZN1
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COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION COMPLEX
Descriptor:ribosomal 23S RNA, ribosomal 16S RNA, Ribosome recycling factor, ...
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
1ZN0
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COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT BOUND WITH BOTH EF-G (GDPNP) AND RRF
Descriptor:16S RIBOSOMAL RNA, Ribosome recycling factor, ELONGATION FACTOR G
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
4V69
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TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME.
Descriptor:30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Villa, E., Sengupta, J., Trabuco, L.G., LeBarron, J., Baxter, W.T., Shaikh, T.R., Grassucci, R.A., Nissen, P., Ehrenberg, M., Schulten, K., Frank, J.
Deposit date:2008-12-11
Release date:2014-07-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
1LS2
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FITTING OF EF-TU AND TRNA IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
Descriptor:Phenylalanine transfer RNA, Elongation Factor Tu
Authors:Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
Deposit date:2002-05-16
Release date:2002-06-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1LU3
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SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
Descriptor:PHENYLALANINE TRANSFER RNA
Authors:Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
Deposit date:2002-05-21
Release date:2002-06-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1MI6
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DOCKING OF THE MODIFIED RF2 X-RAY STRUCTURE INTO THE LOW RESOLUTION CRYO-EM MAP OF RF2 E.COLI 70S RIBOSOME
Descriptor:peptide chain release factor RF-2
Authors:Rawat, U.B.S., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J.
Deposit date:2002-08-22
Release date:2003-01-14
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (10.9 Å)
Cite:A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
1MVR
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DECODING CENTER & PEPTIDYL TRANSFERASE CENTER FROM THE X-RAY STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME, ALIGNED TO THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
Descriptor:mRNA, triplet codon (A-site), Helix 34 of 16S rRNA, ...
Authors:Rawat, U.B., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J.
Deposit date:2002-09-26
Release date:2003-04-01
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
4V47
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME
Descriptor:23S ribosomal RNA, 5S ribosomal RNA, 50S ribosomal protein L2, ...
Authors:Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2018-01-24
Method:ELECTRON MICROSCOPY (12.3 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V48
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REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME
Descriptor:23S ribosomal RNA, 5S ribosomal RNA, tRNA-PHE, ...
Authors:Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2018-01-24
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
1PN6
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DOMAIN-WISE FITTING OF THE CRYSTAL STRUCTURE OF T.THERMOPHILUS EF-G INTO THE LOW RESOLUTION MAP OF THE RELEASE COMPLEX.PUROMYCIN.EFG.GDPNP OF E.COLI 70S RIBOSOME.
Descriptor:Elongation factor G
Authors:Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1PN7
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COORDINATES OF S12, L11 PROTEINS AND P-TRNA, FROM THE 70S X-RAY STRUCTURE ALIGNED TO THE 70S CRYO-EM MAP OF E.COLI RIBOSOME
Descriptor:P-tRNA, 30S ribosomal protein S12, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1PN8
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COORDINATES OF S12, L11 PROTEINS AND E-SITE TRNA FROM 70S CRYSTAL STRUCTURE SEPARATELY FITTED INTO THE CRYO-EM MAP OF E.COLI 70S.EF-G.GDPNP COMPLEX. THE ATOMIC COORDINATES ORIGINALLY FROM THE E-SITE TRNA WERE FITTED IN THE POSITION OF THE HYBRID P/E-SITE TRNA.
Descriptor:E-tRNA, 30S ribosomal protein S12, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1QZA
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COORDINATES OF THE A/T SITE TRNA MODEL FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:Phe-tRNA
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZB
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COORDINATES OF THE A-SITE TRNA MODEL FITTED INTO THE CRYO-EM MAP OF 70S RIBOSOME IN THE PRE-TRANSLOCATIONAL STATE
Descriptor:Phe-tRNA
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZC
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COORDINATES OF S12, SH44, LH69 AND SRL SEPARATELY FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:16S rRNA, 23S rRNA, 30S ribosomal protein S12
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZD
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EF-TU.KIRROMYCIN COORDINATES FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:Elongation factor Tu
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1R2W
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COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME
Descriptor:58nts of 23S rRNA, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-30
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1R2X
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COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:58nts of 23S rRNA, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-30
Release date:2003-11-04
Last modified:2013-12-04
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
3IYX
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COORDINATES OF THE B1B BRIDGE-FORMING PROTEIN STRUCTURES FITTED INTO THE CRYO-EM MAP OF E.COLI 70S RIBOSOME (EMD-1056)
Descriptor:30S ribosomal protein S13, 50S ribosomal protein L5, 50S ribosomal protein L31
Authors:Shasmal, M., Chakraborty, B., Sengupta, J.
Deposit date:2010-07-23
Release date:2010-09-01
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome
Biochem.Biophys.Res.Commun., 399, 2010
3IYY
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COORDINATES OF THE B1B BRIDGE-FORMING PROTEIN STRUCTURES FITTED INTO THE CRYO-EM MAP OF EFG.GDPNP-BOUND E.COLI 70S RIBOSOME(EMD-1363)
Descriptor:50S ribosomal protein L31, 50S ribosomal protein L5, 30S ribosomal protein S13
Authors:Shasmal, M., Chakraborty, B., Sengupta, J.
Deposit date:2010-07-23
Release date:2010-09-01
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (10.9 Å)
Cite:Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome.
Biochem.Biophys.Res.Commun., 399, 2010
5XZC
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CRYO-EM STRUCTURE OF P300-P53 PROTEIN COMPLEX
Descriptor:Histone acetyltransferase p300, Cellular tumor antigen p53
Authors:Ghosh, R., Roy, S., Sengupta, J.
Deposit date:2017-07-12
Release date:2019-01-23
Method:ELECTRON MICROSCOPY (10.7 Å)
Cite:(manuscript in preparation) Title: p53-mediated Allosteric Activation of p300 Autoacetylation: Implications for Specificity of Gene Regulation
To Be Published
5XZS
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CRYO-EM STRUCTURE OF P300
Descriptor:Histone acetyltransferase p300
Authors:Ghosh, R., Roy, S., Sengupta, J.
Deposit date:2017-07-13
Release date:2019-01-23
Method:ELECTRON MICROSCOPY (9.8 Å)
Cite:(manuscript in preparation) Title: p53-mediated Allosteric Activation of p300 Autoacetylation: Implications for Specificity of Gene Regulation
To be published
3DWU
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TRANSITION-STATE MODEL CONFORMATION OF THE SWITCH I REGION FITTED INTO THE CRYO-EM MAP OF THE EEF2.80S.ALF4.GDP COMPLEX
Descriptor:Elongation factor Tu-B
Authors:Nissen, P., Nyborg, J., Kjeldgaard, M.
Deposit date:2008-07-23
Release date:2008-08-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12.6 Å)
Cite:Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy.
J.Mol.Biol., 382, 2008
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