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2DN1
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BU of 2dn1 by Molmil
1.25A resolution crystal structure of human hemoglobin in the oxy form
Descriptor: Hemoglobin alpha subunit, Hemoglobin beta subunit, OXYGEN MOLECULE, ...
Authors:Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN2
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BU of 2dn2 by Molmil
1.25A resolution crystal structure of human hemoglobin in the deoxy form
Descriptor: Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE
Authors:Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN3
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BU of 2dn3 by Molmil
1.25A resolution crystal structure of human hemoglobin in the carbonmonoxy form
Descriptor: CARBON MONOXIDE, Hemoglobin alpha subunit, Hemoglobin beta subunit, ...
Authors:Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
1UIW
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BU of 1uiw by Molmil
Crystal Structures of Unliganded and Half-Liganded Human Hemoglobin Derivatives Cross-Linked between Lys 82beta1 and Lys 82beta2
Descriptor: BUT-2-ENEDIAL, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Park, S.-Y, Shibayama, N, Tame, J.R.H.
Deposit date:2003-07-23
Release date:2003-08-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of unliganded and half-liganded human hemoglobin derivatives cross-linked between Lys 82beta1 and Lys 82beta2
Biochemistry, 43, 2004
1IRD
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BU of 1ird by Molmil
Crystal Structure of Human Carbonmonoxy-Haemoglobin at 1.25 A Resolution
Descriptor: CARBON MONOXIDE, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Park, S.-Y, Tame, J.R.H.
Deposit date:2001-09-27
Release date:2001-10-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Carbonmonoxy-Haemoglobin at 1.25 A Resolution
To be Published
4YUS
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BU of 4yus by Molmil
Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in hexagonal form
Descriptor: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
Authors:Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
Deposit date:2015-03-19
Release date:2016-06-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
4YUT
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BU of 4yut by Molmil
Crystal structure of photoactivated adenylyl cyclase of a cyanobacteriaOscillatoria acuminata in orthorhombic form
Descriptor: FLAVIN MONONUCLEOTIDE, Family 3 adenylate cyclase
Authors:Park, S.-Y, Ohki, M, Sugiyama, K, Kawai, F, Iseki, M.
Deposit date:2015-03-19
Release date:2016-06-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
2E47
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BU of 2e47 by Molmil
Crystal Structure Analysis of the clock protein EA4 (glycosylation form)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, Time interval measuring enzyme TIME, ...
Authors:Park, S.-Y, Hiraki, T.
Deposit date:2006-12-05
Release date:2007-12-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
2E46
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BU of 2e46 by Molmil
Crystal Structure Analysis of the clock protein EA4
Descriptor: COPPER (II) ION, Time interval measuring enzyme TIME, ZINC ION
Authors:Park, S.-Y, Hiraki, T.
Deposit date:2006-12-05
Release date:2008-02-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
1QSI
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BU of 1qsi by Molmil
MAGNESIUM(II)-AND ZINC(II)-PROTOPORPHYRIN IX'S STABILIZE THE LOWEST OXYGEN AFFINITY STATE OF HUMAN HEMOGLOBIN EVEN MORE STRONGLY THAN DEOXYHEME
Descriptor: CARBON MONOXIDE, PROTEIN (HEMOGLOBIN ALPHA CHAIN), PROTEIN (HEMOGLOBIN BETA CHAIN), ...
Authors:Miyazaki, G, Morimoto, H, Yun, K.-M, Park, S.-Y, Nakagawa, A, Minagawa, H, Shibayama, N.
Deposit date:1999-06-22
Release date:1999-07-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Magnesium(II) and zinc(II)-protoporphyrin IX's stabilize the lowest oxygen affinity state of human hemoglobin even more strongly than deoxyheme.
J.Mol.Biol., 292, 1999
3WMV
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BU of 3wmv by Molmil
The structure of an anti-cancer lectin mytilec with ligand from the mussel Mytilus galloprovincialis
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Lectin
Authors:Terada, D, Kawai, F, Noguchi, H, Unzai, S, Park, S.-Y, Ozeki, Y, Tame, J.R.H.
Deposit date:2013-11-27
Release date:2014-12-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Crystal structure of MytiLec, a galactose-binding lectin from the mussel Mytilus galloprovincialis with cytotoxicity against certain cancer cell types
Sci Rep, 6, 2016
3WMU
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BU of 3wmu by Molmil
The structure of an anti-cancer lectin mytilec apo-form from the mussel Mytilus galloprovincialis
Descriptor: GLYCEROL, Lectin
Authors:Terada, D, Kawai, F, Noguchi, H, Unzai, S, Park, S.-Y, Ozeki, Y, Tame, J.R.H.
Deposit date:2013-11-27
Release date:2014-12-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of MytiLec, a galactose-binding lectin from the mussel Mytilus galloprovincialis with cytotoxicity against certain cancer cell types
Sci Rep, 6, 2016
2DGE
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BU of 2dge by Molmil
Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana
Descriptor: Cytochrome c6, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION
Authors:Chida, H, Yokoyama, T, Kawai, F, Nakazawa, A, Akazaki, H, Takayama, Y, Hirano, T, Suruga, K, Satoh, T, Yamada, S, Kawachi, R, Unzai, S, Nishio, T, Park, S.-Y, Oku, T.
Deposit date:2006-03-11
Release date:2006-07-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana
Febs Lett., 580, 2006
2EX2
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BU of 2ex2 by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli
Descriptor: GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-07
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EXA
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BU of 2exa by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FAROM
Descriptor: (2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EX9
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BU of 2ex9 by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-V
Descriptor: (2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenoxyacetyl)amino]ethyl}-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EX8
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BU of 2ex8 by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-G
Descriptor: OPEN FORM - PENICILLIN G, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EXB
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BU of 2exb by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX
Descriptor: 2,2-dimethylpropanoyloxymethyl (2R)-5-(aminocarbonyloxymethyl)-2-[(1R)-1-[[(Z)-2-(2-azanyl-1,3-thiazol-4-yl)pent-2-enoyl]amino]-2-oxidanylidene-ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylate, GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
6AB9
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BU of 6ab9 by Molmil
The crystal structure of the relaxed state of Nonlabens marinus Rhodopsin 3
Descriptor: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
Authors:Yun, J.-H, Ohki, M, Park, J.-H, Jin, Z, Lee, W, Liu, H, Tame, J.R.H, Shibayama, N, Park, S.-Y.
Deposit date:2018-07-20
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The pumping mechanism of NM-R3, a light-driven cyanobacterial chloride importer in the rhodopsin family
To Be Published
6ABA
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BU of 6aba by Molmil
The crystal structure of the photoactivated state of Nonlabens marinus Rhodopsin 3
Descriptor: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
Authors:Yun, J.-H, Ohki, M, Park, J.-H, Jin, Z, Lee, W, Liu, H, Tame, J.R.H, Shibayama, N, Park, S.-Y.
Deposit date:2018-07-20
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:The pumping mechanism of NM-R3, a light-driven marine bacterial chloride importer in the rhodopsin family
To Be Published
1WXR
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BU of 1wxr by Molmil
Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli
Descriptor: haemoglobin protease
Authors:Otto, B.R, Sijbrandi, R, Luirink, J, Oudega, B, Heddle, J.G, Mizutani, K, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-01-31
Release date:2005-03-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of heme binding protein, an autotransporter hemoglobin protease from pathogenic escherichia coli
J.Biol.Chem., 280, 2005
1WUB
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BU of 1wub by Molmil
Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8
Descriptor: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, conserved hypothetical protein TT1927b
Authors:Handa, N, Idaka, M, Terada, T, Hamana, H, Ishizuka, Y, Park, S.-Y, Tame, J.R.H, Doi-Katayama, Y, Hirota, H, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-03
Release date:2004-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8
Protein Sci., 14, 2005
1QSH
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BU of 1qsh by Molmil
MAGNESIUM(II)-AND ZINC(II)-PROTOPORPHYRIN IX'S STABILIZE THE LOWEST OXYGEN AFFINITY STATE OF HUMAN HEMOGLOBIN EVEN MORE STRONGLY THAN DEOXYHEME
Descriptor: PROTEIN (HEMOGLOBIN ALPHA CHAIN), PROTEIN (HEMOGLOBIN BETA CHAIN), PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Miyazaki, G, Morimoto, H, Yun, K.-M, Park, S.-Y, Nakagawa, A, Minagawa, H, Shibayama, N.
Deposit date:1999-06-22
Release date:1999-07-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Magnesium(II) and zinc(II)-protoporphyrin IX's stabilize the lowest oxygen affinity state of human hemoglobin even more strongly than deoxyheme.
J.Mol.Biol., 292, 1999
3VRE
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BU of 3vre by Molmil
The crystal structure of hemoglobin from woolly mammoth in the deoxy form
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta/delta hybrid, PROTOPORPHYRIN IX CONTAINING FE
Authors:Noguchi, H, Campbell, K.L, Ho, C, Park, S.-Y, Tame, J.R.H.
Deposit date:2012-04-09
Release date:2012-11-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of haemoglobin from woolly mammoth in liganded and unliganded states.
Acta Crystallogr.,Sect.D, 68, 2012
3VRG
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BU of 3vrg by Molmil
The crystal structure of hemoglobin from woolly mammoth in the met form
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta/delta hybrid, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Noguchi, H, Campbell, K.L, Ho, C, Park, S.-Y, Tame, J.R.H.
Deposit date:2012-04-09
Release date:2012-11-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of haemoglobin from woolly mammoth in liganded and unliganded states.
Acta Crystallogr.,Sect.D, 68, 2012

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