Author results

1TFK
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBTOR PROTEIN
分子名称:Colicin D, Colicin D immunity protein, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
著者Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2004-05-27
公開日2005-03-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
1TFO
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBITOR PROTEIN
分子名称:Colicin D, Colicin D immunity protein
著者Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2004-05-27
公開日2005-03-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
3A06
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CRYSTAL STRUCTURE OF DXR FROM THERMOOGA MARITIA, IN COMPLEX WITH FOSMIDOMYCIN AND NADPH
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
著者Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
登録日2009-03-02
公開日2010-03-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding
J.Struct.Biol., 170, 2010
3A14
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CRYSTAL STRUCTURE OF DXR FROM THERMOTOGA MARITIMA, IN COMPLEX WITH NADPH
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, MAGNESIUM ION, ...
著者Takenoya, M., Ohtaki, A., Noguchi, K., Sasaki, Y., Ohsawa, K., Yohda, M., Yajima, S.
登録日2009-03-25
公開日2010-04-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding.
J.Struct.Biol., 2010
1T1R
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CRYSTAL STRUCTURE OF THE REDUCTOISOMERASE COMPLEXED WITH A BISPHOSPHONATE
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, [(ISOQUINOLIN-1-YLAMINO)-PHOSPHONO-METHYL]-PHOSPHONIC ACID
著者Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.
登録日2004-04-17
公開日2004-09-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes
J.Am.Chem.Soc., 126, 2004
1T1S
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CRYSTAL STRUCTURE OF THE REDUCTOISOMERASE COMPLEXED WITH A BISPHOSPHONATE
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, MAGNESIUM ION, ...
著者Yajima, S., Hara, K., Sanders, J.M., Yin, F., Ohsawa, K., Wiesner, J., Jomaa, H., Oldfield, E.
登録日2004-04-17
公開日2004-09-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes
J.Am.Chem.Soc., 126, 2004
3W0M
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, APO FORM
分子名称:Hygromycin-B 4-O-kinase, (4S)-2-METHYL-2,4-PENTANEDIOL
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0N
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0O
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH ADP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, ADENOSINE-5'-DIPHOSPHATE, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0P
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (D198A), TERNARY COMPLEX WITH ADP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, ADENOSINE-5'-DIPHOSPHATE, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0Q
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (N203A), TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0R
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CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA (N202A), TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, HYGROMYCIN B VARIANT
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
3W0S
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CRYSTAL STRUCTURE OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(4)-IA, TERNARY COMPLEX WITH AMP-PNP AND HYGROMYCIN B
分子名称:Hygromycin-B 4-O-kinase, HYGROMYCIN B VARIANT, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Iino, D., Takakura, Y., Fukano, K., Sasaki, Y., Hoshino, T., Ohsawa, K., Nakamura, A., Yajima, S.
登録日2012-11-02
公開日2013-08-07
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.
J.Struct.Biol., 183, 2013
1JVS
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; A TARGET ENZYME FOR ANTIMALARIAL DRUGS
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, SULFATE ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Yajima, S., Nonaka, T., Kuzuyama, T., Seto, H., Ohsawa, K.
登録日2001-08-31
公開日2002-10-09
最終更新日2019-11-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with cofactors: implications of a flexible loop movement upon substrate binding.
J.Biochem., 131, 2002
2DFX
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CRYSTAL STRUCTURE OF THE CARBOXY TERMINAL DOMAIN OF COLICIN E5 COMPLEXED WITH ITS INHIBITOR
分子名称:Colicin-E5, Colicin-E5 immunity protein
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-03-06
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2DJH
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5
分子名称:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-04-03
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2EGH
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CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE COMPLEXED WITH A MAGNESIUM ION, NADPH AND FOSMIDOMYCIN
分子名称:1-deoxy-D-xylulose 5-phosphate reductoisomerase, MAGNESIUM ION, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
著者Yajima, S., Hara, K., Iino, D., Sasaki, Y., Kuzuyama, T., Seto, H.
登録日2007-03-01
公開日2007-06-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase in a quaternary complex with a magnesium ion, NADPH and the antimalarial drug fosmidomycin
Acta Crystallogr.,Sect.F, 63, 2007
1WY9
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CRYSTAL STRUCTURE OF MICROGLIA-SPECIFIC PROTEIN, IBA1
分子名称:Allograft inflammatory factor 1, CALCIUM ION
著者Yamada, M., Imai, Y., Kohsaka, S., Kamitori, S.
登録日2005-02-09
公開日2006-02-21
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding
J.Mol.Biol., 364, 2006
2D58
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HUMAN MICROGLIA-SPECIFIC PROTEIN IBA1
分子名称:Allograft inflammatory factor 1, NICKEL (II) ION
著者Kamitori, S.
登録日2005-10-31
公開日2006-10-10
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding
J.Mol.Biol., 364, 2006
5ZNM
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COLICIN D CENTRAL DOMAIN AND C-TERMINAL TRNASE DOMAIN
分子名称:Colicin-D, SULFATE ION, GLYCEROL
著者Chang, J.W., Sato, Y., Ogawa, T., Arakawa, T., Fukai, S., Fushinobu, S., Masaki, H.
登録日2018-04-10
公開日2018-08-29
最終更新日2018-10-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the central and the C-terminal RNase domains of colicin D implicated its translocation pathway through inner membrane of target cell
J. Biochem., 164, 2018