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2ZPC
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BU of 2zpc by Molmil
Crystal structure of the R43L mutant of LolA in the closed form
Descriptor: Outer-membrane lipoprotein carrier protein
Authors:Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K.
Deposit date:2008-07-10
Release date:2008-08-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
2ZPD
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BU of 2zpd by Molmil
Crystal structure of the R43L mutant of LolA in the open form
Descriptor: Outer-membrane lipoprotein carrier protein
Authors:Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K.
Deposit date:2008-07-10
Release date:2008-08-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
4D2Q
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BU of 4d2q by Molmil
Negative-stain electron microscopy of E. coli ClpB mutant E432A (BAP form bound to ClpP)
Descriptor: CLPB
Authors:Carroni, M, Kummer, E, Oguchi, Y, Clare, D.K, Wendler, P, Sinning, I, Kopp, J, Mogk, A, Bukau, B, Saibil, H.R.
Deposit date:2014-05-12
Release date:2014-06-04
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Activity and Cooperation with Hsp70 in Protein Disaggregation.
Elife, 3, 2014
4D2X
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BU of 4d2x by Molmil
Negative-stain electron microscopy of E. coli ClpB of Y503D hyperactive mutant (BAP form bound to ClpP)
Descriptor: CHAPERONE PROTEIN CLPB
Authors:Carroni, M, Kummer, E, Oguchi, Y, Clare, D.K, Wendler, P, Sinning, I, Kopp, J, Mogk, A, Bukau, B, Saibil, H.R.
Deposit date:2014-05-13
Release date:2014-06-04
Last modified:2019-01-23
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Activity and Cooperation with Hsp70 in Protein Disaggregation.
Elife, 3, 2014
4D2U
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BU of 4d2u by Molmil
Negative-stain electron microscopy of E. coli ClpB (BAP form bound to ClpP)
Descriptor: CHAPERONE PROTEIN CLPB
Authors:Carroni, M, Kummer, E, Oguchi, Y, Clare, D.K, Wendler, P, Sinning, I, Kopp, J, Mogk, A, Bukau, B, Saibil, H.R.
Deposit date:2014-05-13
Release date:2014-06-04
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Activity and Cooperation with Hsp70 in Protein Disaggregation.
Elife, 3, 2014
7PT7
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BU of 7pt7 by Molmil
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cell division control protein 7, ...
Authors:Saleh, A, Noguchi, Y, Aramayo, R, Ivanova, M.E, Speck, C.
Deposit date:2021-09-26
Release date:2022-06-08
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer.
Nat Commun, 13, 2022
7PT6
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BU of 7pt6 by Molmil
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 7, DDK kinase regulatory subunit DBF4, ...
Authors:Saleh, A, Noguchi, Y, Aramayo, R, Ivanova, M.E, Speck, C.
Deposit date:2021-09-26
Release date:2022-06-08
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer.
Nat Commun, 13, 2022
1UBM
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BU of 1ubm by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), FE3-S4 CLUSTER, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBH
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BU of 1ubh by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), CARBON MONOXIDE, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBU
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BU of 1ubu by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBT
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BU of 1ubt by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBO
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BU of 1ubo by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), CARBON MONOXIDE, FE3-S4 CLUSTER, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBL
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BU of 1ubl by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), CARBON MONOXIDE, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBR
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BU of 1ubr by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), CARBON MONOXIDE, FE3-S4 CLUSTER, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBK
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BU of 1ubk by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), CARBON MONOXIDE, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1UBJ
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BU of 1ubj by Molmil
Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Descriptor: (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), CARBON MONOXIDE, FE3-S4 CLUSTER, ...
Authors:Ogata, H, Mizoguchi, Y, Mizuno, N, Miki, K, Adachi, S, Yasuoka, N, Yagi, T, Yamauchi, O, Hirota, S, Higuchi, Y.
Deposit date:2003-04-04
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.Am.Chem.Soc., 124, 2002
1JD2
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BU of 1jd2 by Molmil
Crystal Structure of the yeast 20S Proteasome:TMC-95A complex: A non-covalent Proteasome Inhibitor
Descriptor: MAGNESIUM ION, PROTEASOME COMPONENT C1, PROTEASOME COMPONENT C11, ...
Authors:Groll, M, Koguchi, Y, Huber, R, Kohno, J.
Deposit date:2001-06-12
Release date:2002-02-13
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the 20 S proteasome:TMC-95A complex: a non-covalent proteasome inhibitor.
J.Mol.Biol., 311, 2001
2E4I
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BU of 2e4i by Molmil
Human Telomeric DNA mixed-parallel/antiparallel quadruplex under Physiological Ionic Conditions Stabilized by Proper Incorporation of 8-Bromoguanosines
Descriptor: DNA (5'-D(*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*(BGM)P*DGP*DTP*DTP*DAP*(BGM)P*DGP*DG)-3')
Authors:Matsugami, A, Xu, Y, Noguchi, Y, Sugiyama, H, Katahira, M.
Deposit date:2006-12-11
Release date:2007-12-11
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of a human telomeric DNA sequence stabilized by 8-bromoguanosine substitutions, as determined by NMR in a K+ solution
Febs J., 274, 2007
5BK4
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BU of 5bk4 by Molmil
Cryo-EM structure of Mcm2-7 double hexamer on dsDNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (60-mer), strand 1, ...
Authors:Li, H, Yuan, Z, Bai, L.
Deposit date:2017-09-12
Release date:2017-10-25
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structure of Mcm2-7 double hexamer on DNA suggests a lagging-strand DNA extrusion model.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4CIU
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BU of 4ciu by Molmil
Crystal structure of E. coli ClpB
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHAPERONE PROTEIN CLPB
Authors:Kopp, J, Sinning, I, Bukau, B, Kummer, E, Mogk, A.
Deposit date:2013-12-16
Release date:2014-05-14
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Head-to-Tail Interactions of the Coiled-Coil Domains Regulate Clpb Cooperation with Hsp70 in Protein Disaggregation
Elife, 3, 2014
7YOW
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BU of 7yow by Molmil
Crystal structure of SARS-CoV-2 omicron variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: Fab Heavy chain, Fab Light chain, SULFATE ION, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-08-02
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
8I5I
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BU of 8i5i by Molmil
Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab
Descriptor: Fab Heavy chain, Fab Light chain, Spike protein S1
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2023-01-25
Release date:2023-04-19
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
8I5H
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BU of 8i5h by Molmil
Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2023-01-25
Release date:2023-04-19
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023
7MCA
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BU of 7mca by Molmil
Structure of the S. cerevisiae origin recognition complex bound to the replication initiator Cdc6 and the ARS1 origin DNA.
Descriptor: Cell division control protein 6, DNA (85-MER), MAGNESIUM ION, ...
Authors:Feng, X, Li, H.
Deposit date:2021-04-01
Release date:2021-06-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The structure of ORC-Cdc6 on an origin DNA reveals the mechanism of ORC activation by the replication initiator Cdc6.
Nat Commun, 12, 2021
7WNB
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BU of 7wnb by Molmil
Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ...
Authors:Yamamoto, A, Higashiura, A.
Deposit date:2022-01-18
Release date:2023-04-19
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants.
Commun Biol, 6, 2023

 

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