Author results

5Z7M
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SMCHIA SLIDING-INTERMEDIATE WITH CHITOHEXAOSE
Descriptor:Chitinase A, N-ACETYL-D-GLUCOSAMINE, DI(N-ACETYL-D-GLUCOSAMINE), ...
Authors:Nakamura, A., Iino, R.
Deposit date:2018-01-30
Release date:2018-09-26
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin.
Nat Commun, 9, 2018
5Z7N
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SMCHIA SLIDING-INTERMEDIATE WITH CHITOPENTAOSE
Descriptor:Chitinase A, N-ACETYL-D-GLUCOSAMINE, DI(N-ACETYL-D-GLUCOSAMINE), ...
Authors:Nakamura, A., Iino, R.
Deposit date:2018-01-30
Release date:2018-09-26
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin.
Nat Commun, 9, 2018
5Z7O
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SMCHIA SLIDING-INTERMEDIATE WITH CHITOTETRAOSE
Descriptor:Chitinase A, GLYCEROL, DI(N-ACETYL-D-GLUCOSAMINE)
Authors:Nakamura, A., Iino, R.
Deposit date:2018-01-30
Release date:2018-09-26
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin.
Nat Commun, 9, 2018
5Z7P
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SMCHIA SLIDING-INTERMEDIATE WITH CHITOTRIOSE
Descriptor:Chitinase A, N-ACETYL-D-GLUCOSAMINE, GLYCEROL
Authors:Nakamura, A., Iino, R.
Deposit date:2018-01-30
Release date:2018-09-26
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin.
Nat Commun, 9, 2018
5Z7W
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CRYSTAL STRUCTURE OF STRIGA HERMONTHICA HTL1 (SHHTL1)
Descriptor:Hyposensitive to light 1, MAGNESIUM ION, SODIUM ION, ...
Authors:Xu, Y., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2018-01-30
Release date:2018-08-29
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.657 Å)
Cite:Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
5Z7X
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CRYSTAL STRUCTURE OF STRIGA HERMONTHICA HTL4 (SHHTL4)
Descriptor:Hyposensitive to light 4, 1,2-ETHANEDIOL, MAGNESIUM ION
Authors:Xu, Y., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2018-01-30
Release date:2018-08-29
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.055 Å)
Cite:Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
5Z7Y
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CRYSTAL STRUCTURE OF STRIGA HERMONTHICA HTL7 (SHHTL7)
Descriptor:Hyposensitive to light 7, 1,4-DIETHYLENE DIOXIDE, MAGNESIUM ION, ...
Authors:Xu, Y., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2018-01-30
Release date:2018-08-29
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
5Z7Z
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CRYSTAL STRUCTURE OF STRIGA HERMONTHICA DWARF14 (SHD14)
Descriptor:Dwarf 14, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Xu, Y., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2018-01-30
Release date:2018-08-29
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.978 Å)
Cite:Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
5ZD4
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CRYSTAL STRUCTURE OF MBP-FUSED BIL1/BZR1 IN COMPLEX WITH DOUBLE-STRANDED DNA
Descriptor:Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1, DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*GP*TP*GP*TP*GP*AP*AP*A)-3'), MALTOSE, ...
Authors:Nosaki, S., Miyakawa, T., Xu, Y., Nakamura, A., Hirabayashi, K., Tanokura, M.
Deposit date:2018-02-22
Release date:2018-08-29
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structural basis for brassinosteroid response by BIL1/BZR1.
Nat Plants, 4, 2018
6A56
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AJLEC FROM THE SEA ANEMONE ANTHOPLEURA JAPONICA
Descriptor:AJLec, BETA-LACTOSE, CALCIUM ION, ...
Authors:Unno, H., Hatakeyama, T.
Deposit date:2018-06-22
Release date:2018-07-25
Last modified:2018-08-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica.
Sci Rep, 8, 2018
5ZL9
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ENGINEERED CHITINASE, SMCHIAB-FYSFV
Descriptor:Chitinase AB, GLYCEROL
Authors:Kawai, F., Nakamura, A., Iino, R.
Deposit date:2018-03-27
Release date:2018-07-11
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Engineered chitinase, SmChiAB-FYSFV
Acs Omega, 2018
5Y33
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CRYSTAL STRUCTURE OF ALGINATE LYASE FROM FLAVOBACTERIUM SP. UMI-01 REVEALS POLYMANNURONATE SPECIFICITY
Descriptor:Alginate lyase
Authors:Qin, H.-M., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2017-07-27
Release date:2018-07-04
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural basis for controlling the enzymatic properties of polymannuronate preferred alginate lyase FlAlyA from the PL-7 family.
Chem. Commun. (Camb.), 54, 2018
5YA8
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH MYO-INOSITOL
Descriptor:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
Authors:Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
Deposit date:2017-08-31
Release date:2018-05-23
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAB
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY
Descriptor:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, ACETATE ION
Authors:Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
Deposit date:2017-08-31
Release date:2018-05-23
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAP
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH L-GLUCONO-1,5-LACTONE
Descriptor:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, (3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-one
Authors:Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
Deposit date:2017-09-01
Release date:2018-05-23
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5YAQ
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CRYSTAL STRUCTURE OF SCYLLO-INOSITOL DEHYDROGENASE WITH L-GLUCOSE DEHYDROGENASE ACTIVITY COMPLEXED WITH SCYLLO-INOSOSE
Descriptor:Scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone
Authors:Fukano, K., Shimizu, T., Sasaki, Y., Nakamura, A., Yajima, S.
Deposit date:2017-09-01
Release date:2018-05-23
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
PLoS ONE, 13, 2018
5X9A
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CRYSTAL STRUCTURE OF CALAXIN WITH CALCIUM
Descriptor:Calaxin, CALCIUM ION, 1,2-ETHANEDIOL
Authors:Shojima, T., Hou, F., Takahashi, Y., Okai, M., Mizuno, K., Inaba, K., Miyakawa, T., Tanokura, M.
Deposit date:2017-03-06
Release date:2018-03-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition
Sci Rep, 8, 2018
5YPX
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CRYSTAL STRUCTURE OF CALAXIN WITH MAGNESIUM
Descriptor:Calaxin, MAGNESIUM ION
Authors:Shojima, T., Hou, F., Takahashi, Y., Okai, M., Mizuno, K., Inaba, K., Miyakawa, T., Tanokura, M.
Deposit date:2017-11-04
Release date:2018-03-14
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition
Sci Rep, 8, 2018
5YP1
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, GLYCEROL
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP2
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH DPP4 INHIBITOR FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, (2S,5R)-1-[2-[[1-(hydroxymethyl)cyclopentyl]amino]ethanoyl]pyrrolidine-2,5-dicarbonitrile, GLYCEROL
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP3
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH ILE-PRO FROM PSEUDOXANTHOMONAS MEXICANA
Descriptor:Dipeptidyl aminopeptidase 4, ISOLEUCINE, PROLINE, ...
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5YP4
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CRYSTAL STRUCTURE OF DIPEPTIDYL PEPTIDASE IV (DPP IV) WITH LYS-PRO FROM PSEUDOXANTHOMONAS MEXICANA WO24
Descriptor:Dipeptidyl aminopeptidase 4, GLYCEROL, LYSINE, ...
Authors:Roppongi, S., Suzuki, Y., Tateoka, C., Fuimoto, M., Morisawa, S., Iizuka, I., Nakamura, A., Honma, N., Shida, Y., Ogasawara, W., Tanaka, N., Sakamoto, Y., Nonaka, T.
Deposit date:2017-11-01
Release date:2018-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues.
Sci Rep, 8, 2018
5WUT
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CRYSTAL STRUCTURE OF LAMINARINASE FROM FLAVOBACTERIUM SP. UMI-01
Descriptor:ULam111
Authors:Qin, H.M., Miyakawa, Y., Nakamura, A., Tanokura, M.
Deposit date:2016-12-21
Release date:2018-01-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of laminarinase from Flavobacterium sp. UMI-01
To Be Published
5X6B
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CRYSTAL STRUCTURE OF SEPCYSE-SEPCYSS IN COMPLEX WITH TRNACYS FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:O-phospho-L-seryl-tRNA:Cys-tRNA synthase, Uncharacterized protein MJ1481, tRNACys
Authors:Chen, M., Kato, K., Yao, M.
Deposit date:2017-02-21
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2.596 Å)
Cite:Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun, 8, 2017
5X6C
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CRYSTAL STRUCTURE OF SEPRS-SEPCYSE FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:O-phosphoserine--tRNA(Cys) ligase, Uncharacterized protein MJ1481, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Chen, M., Kato, K., Yao, M.
Deposit date:2017-02-21
Release date:2017-12-06
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Structural basis for tRNA-dependent cysteine biosynthesis
Nat Commun, 8, 2017