Author results

1KFA
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CRYSTAL STRUCTURE OF FAB FRAGMENT COMPLEXED WITH GIBBERELLIN A4
Descriptor:monoclonal antibody light chain, monoclonal antibody heavy chain, GIBBERELLIN A4
Authors:Murata, T., Fushinobu, S., Nakajima, M., Asami, O., Sassa, T., Wakagi, T., Yamaguchi, I.
Deposit date:2001-11-20
Release date:2002-09-11
Last modified:2013-09-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the liganded anti-gibberellin A(4) antibody 4-B8(8)/E9 Fab fragment.
Biochem.Biophys.Res.Commun., 293, 2002
1YT6
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NMR STRUCTURE OF PEPTIDE SD
Descriptor:peptide SD
Authors:Murata, T., Hemmi, H., Nakamura, S., Shimizu, K., Suzuki, Y., Yamaguchi, I.
Deposit date:2005-02-10
Release date:2005-09-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
Febs J., 272, 2005
2BL2
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THE MEMBRANE ROTOR OF THE V-TYPE ATPASE FROM ENTEROCOCCUS HIRAE
Descriptor:V-TYPE SODIUM ATP SYNTHASE SUBUNIT K, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, SODIUM ION, ...
Authors:Murata, T., Yamato, I., Kakinuma, Y., Leslie, A.G.W., Walker, J.E.
Deposit date:2005-02-25
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Rotor of the Vacuolar-Type Na- ATPase from Enterococcus Hirae
Science, 308, 2005
2CYD
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CRYSTAL STRUCTURE OF LITHIUM BOUND ROTOR RING OF THE V-ATPASE FROM ENTEROCOCCUS HIRAE
Descriptor:V-type sodium ATP synthase subunit K, LITHIUM ION, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Murata, T., Yamato, I., Kakinuma, Y., Shirouzu, M., Walker, J.E., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-06
Release date:2006-06-27
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae
To be Published
2DB4
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CRYSTAL STRUCTURE OF ROTOR RING WITH DCCD OF THE V- ATPASE FROM ENTEROCOCCUS HIRAE
Descriptor:V-Type Sodium ATPase Subunit K, DICYCLOHEXYLUREA, SODIUM ION, ...
Authors:Murata, T., Yamato, I., Kakinuma, Y., Shirouzu, M., Walker, J.E., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-15
Release date:2006-12-05
Last modified:2012-05-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase.
Proc.Natl.Acad.Sci.USA, 108, 2011
3VG9
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CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN ALLOSTERIC INVERSE-AGONIST ANTIBODY AT 2.7 A RESOLUTION
Descriptor:Adenosine receptor A2a, antibody fab fragment light chain, antibody fab fragment heavy chain, ...
Authors:Hino, T., Arakawa, T., Iwanari, H., Yurugi-Kobayashi, T., Ikeda-Suno, C., Nakada-Nakura, Y., Kusano-Arai, O., Weyand, S., Shimamura, T., Nomura, N., Cameron, A.D., Kobayashi, T., Hamakubo, T., Iwata, S., Murata, T.
Deposit date:2011-08-04
Release date:2012-02-01
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody
Nature, 482, 2012
3VGA
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CRYSTAL STRUCTURE OF HUMAN ADENOSINE A2A RECEPTOR WITH AN ALLOSTERIC INVERSE-AGONIST ANTIBODY AT 3.1 A RESOLUTION
Descriptor:Adenosine receptor A2a, antibody fab fragment light chain, antibody fab fragment heavy chain, ...
Authors:Hino, T., Arakawa, T., Iwanari, H., Yurugi-Kobayashi, T., Ikeda-Suno, C., Nakada-Nakura, Y., Kusano-Arai, O., Weyand, S., Shimamura, T., Nomura, N., Cameron, A.D., Kobayashi, T., Hamakubo, T., Iwata, S., Murata, T.
Deposit date:2011-08-04
Release date:2012-02-01
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody
Nature, 482, 2012
4YZF
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CRYSTAL STRUCTURE OF THE ANION EXCHANGER DOMAIN OF HUMAN ERYTHROCYTE BAND 3
Descriptor:Band 3 anion transport protein, FAB fragment of Immunoglobulin (IgG) molecule, 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}
Authors:Alguel, Y., Arakawa, T., Yugiri, T.K., Iwanari, H., Hatae, H., Iwata, M., Abe, Y., Hino, T., Suno, C.I., Kuma, H., Kang, D., Murata, T., Hamakubo, T., Cameron, A.D., Kobayashi, T., Hamasaki, N., Iwata, S.
Deposit date:2015-03-25
Release date:2015-11-04
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the anion exchanger domain of human erythrocyte band 3.
Science, 350, 2015
5A16
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CRYSTAL STRUCTURE OF FAB4201 RAISED AGAINST HUMAN ERYTHROCYTE ANION EXCHANGER 1
Descriptor:FAB4201 HEAVY CHAIN
Authors:Arakawa, T., Kobayashi-Yugiri, T., Alguel, Y., Weyand, S., Iwanari, H., Hatae, H., Iwata, M., Abe, Y., Hino, T., Ikeda-Suno, C., Kuma, H., Kang, D., Murata, T., Hamakubo, T., Cameron, A., Kobayashi, T., Hamasaki, N., Iwata, S.
Deposit date:2015-04-28
Release date:2015-06-10
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Anion Exchanger Domain of Human Erythrocyte Band 3
Science, 350, 2015
1YXJ
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CRYSTAL STRUCTURE OF HUMAN LECTIN-LIKE OXIDIZED LOW-DENSITY LIPOPROTEIN RECEPTOR 1 (LOX-1) AT LOW PH
Descriptor:oxidised low density lipoprotein (lectin-like) receptor 1, 1,2-ETHANEDIOL
Authors:Ohki, I., Ishigaki, T., Oyama, T., Matsunaga, S., Xie, Q., Ohnishi-Kameyama, M., Murata, T., Tsuchiya, D., Machida, S., Morikawa, K., Tate, S.
Deposit date:2005-02-22
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
Structure, 13, 2005
1YXK
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CRYSTAL STRUCTURE OF HUMAN LECTIN-LIKE OXIDIZED LOW-DENSITY LIPOPROTEIN RECEPTOR 1 (LOX-1) DISULFIDE-LINKED DIMER
Descriptor:oxidised low density lipoprotein (lectin-like) receptor 1
Authors:Ohki, I., Ishigaki, T., Oyama, T., Matsunaga, S., Xie, Q., Ohnishi-Kameyama, M., Murata, T., Tsuchiya, D., Machida, S., Morikawa, K., Tate, S.
Deposit date:2005-02-22
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
Structure, 13, 2005
2D6K
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD (CRYSTAL FORM 1)
Descriptor:lectin, galactose binding, soluble 9
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6N
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE
Descriptor:lectin, galactose binding, soluble 9, ...
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6O
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE DIMER
Descriptor:lectin, galactose binding, soluble 9, ...
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6P
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH T-ANTIGEN
Descriptor:lectin, galactose binding, soluble 9, ...
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2ZHK
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE DIMER (CRYSTAL 1)
Descriptor:Galectin-9, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE
Authors:Nagae, M., Nishi, N., Murata, T., Usui, T., Nakamura, T., Wakatsuki, S., Kato, R.
Deposit date:2008-02-06
Release date:2008-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
2ZHL
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE DIMER (CRYSTAL 2)
Descriptor:Galectin-9, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE
Authors:Nagae, M., Nishi, N., Murata, T., Usui, T., Nakamura, T., Wakatsuki, S., Kato, R.
Deposit date:2008-02-06
Release date:2008-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
2ZHM
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE TRIMER (CRYSTAL 1)
Descriptor:Galectin-9, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE, ...
Authors:Nagae, M., Nishi, N., Murata, T., Usui, T., Nakamura, T., Wakatsuki, S., Kato, R.
Deposit date:2008-02-06
Release date:2008-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
2ZHN
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE TRIMER (CRYSTAL 2)
Descriptor:GALECTIN-9, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE, ...
Authors:Nagae, M., Nishi, N., Murata, T., Usui, T., Nakamura, T., Wakatsuki, S., Kato, R.
Deposit date:2008-02-06
Release date:2008-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
5AZD
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CRYSTAL STRUCTURE OF THERMOPHILIC RHODOPSIN.
Descriptor:Bacteriorhodopsin
Authors:Mizutani, K., Hashimoto, N., Tsukamoto, T., Yamashita, K., Yamamoto, M., Sudo, Y., Murata, T.
Deposit date:2015-09-30
Release date:2016-04-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray crystallographic structure of thermophilic rhodopsin: implications for high thermal stability and optogenetic availability.
To Be Published
5ZE9
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CRYSTAL STRUCTURE OF AMP-PNP BOUND MUTANT A3B3 COMPLEX FROM ENTEROCOCCUS HIRAE V-ATPASE
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Maruyama, S., Suzuki, K., Sasaki, H., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
5ZEA
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CRYSTAL STRUCTURE OF THE NUCLEOTIDE-FREE MUTANT A3B3
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, GLYCEROL
Authors:Maruyama, S., Suzuki, K., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (3.384 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
6IIE
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CRYSTAL STRUCTURE OF HUMAN DIACYLGLYCEROL KINASE ALPHA EF-HAND DOMAINS BOUND TO CA2+
Descriptor:Diacylglycerol kinase alpha, CALCIUM ION, GLYCEROL, ...
Authors:Takahashi, D., Suzuki, K., Sakamoto, T., Iwamoto, T., Murata, T., Sakane, F.
Deposit date:2018-10-04
Release date:2019-02-20
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (2.142 Å)
Cite:Crystal structure and calcium-induced conformational changes of diacylglycerol kinase alpha EF-hand domains.
Protein Sci., 28, 2019
3AON
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CRYSTAL STRUCTURE OF THE CENTRAL AXIS (NTPD-NTPG) IN THE CATALYTIC PORTION OF ENTEROCOCCUS HIRAE V-TYPE SODIUM ATPASE
Descriptor:V-type sodium ATPase subunit D, V-type sodium ATPase subunit G, NITRATE ION
Authors:Saijo, S., Arai, S., Hossain, K.M.M., Yamato, I., Kakinuma, Y., Ishizuka-Katsura, Y., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Murata, T.
Deposit date:2010-10-04
Release date:2011-10-05
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the central axis DF complex of the prokaryotic V-ATPase
Proc.Natl.Acad.Sci.USA, 108, 2011
3O0R
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CRYSTAL STRUCTURE OF NITRIC OXIDE REDUCTASE FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH ANTIBODY FRAGMENT
Descriptor:antibody fab fragment light chain, antibody fab fragment heavy chain, Nitric oxide reductase subunit B, ...
Authors:Hino, T., Matsumoto, Y., Nagano, S., Sugimoto, H., Fukumori, Y., Murata, T., Iwata, S., Shiro, Y.
Deposit date:2010-07-20
Release date:2010-12-29
Last modified:2013-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of biological N2O generation by bacterial nitric oxide reductase
Science, 330, 2010
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