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8GUH
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BU of 8guh by Molmil
Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with Tris
Descriptor: 1,2-ETHANEDIOL, Serine palmitoyltransferase, [4-[[[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]amino]methyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate
Authors:Murakami, T, Takahashi, A, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2022-09-12
Release date:2023-07-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of Sphingobacterium multivorum serine palmitoyltransferase complexed with tris(hydroxymethyl)aminomethane.
Acta Crystallogr.,Sect.F, 78, 2022
8H20
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BU of 8h20 by Molmil
Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with Glycine
Descriptor: 1,2-ETHANEDIOL, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], Serine palmitoyltransferase
Authors:Murakami, T, Takahashi, A, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2022-10-04
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum.
J.Biol.Chem., 299, 2023
8H21
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Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-alanine
Descriptor: 1,2-ETHANEDIOL, 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, Serine palmitoyltransferase
Authors:Murakami, T, Takahashi, A, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2022-10-04
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum.
J.Biol.Chem., 299, 2023
8H1Q
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Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-serine
Descriptor: 1,2-ETHANEDIOL, Serine palmitoyltransferase, [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE
Authors:Murakami, T, Takahashi, A, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2022-10-03
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum.
J.Biol.Chem., 299, 2023
8H29
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BU of 8h29 by Molmil
Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-threonine
Descriptor: 1,2-ETHANEDIOL, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-threonine, Serine palmitoyltransferase
Authors:Murakami, T, Takahashi, A, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2022-10-05
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum.
J.Biol.Chem., 299, 2023
8H1Y
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BU of 8h1y by Molmil
Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-homoserine
Descriptor: (2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-oxidanyl-butanoic acid, 1,2-ETHANEDIOL, Serine palmitoyltransferase
Authors:Murakami, T, Takahashi, A, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2022-10-04
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum.
J.Biol.Chem., 299, 2023
8IYT
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Crystal Structure of Serine Palmitoyltransferase complexed with D-methylserine
Descriptor: (2~{R})-2-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid, 1,2-ETHANEDIOL, Serine palmitoyltransferase
Authors:Takahashi, A, Murakami, T, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2023-04-06
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Serine Palmitoyltransferase from Sphingobacterium multivorum
To Be Published
8IYP
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Crystal structure of serine palmitoyltransferase soaked in 190 mM D-serine solution
Descriptor: 1,2-ETHANEDIOL, Serine palmitoyltransferase, [3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE
Authors:Takahashi, A, Murakami, T, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2023-04-05
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:Crystal structure of Serine Palmitoyltransferase from Sphingobacterium multivorum
To Be Published
1F2D
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BU of 1f2d by Molmil
1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE
Descriptor: 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
Authors:Yao, M, Ose, T, Sugimoto, H, Horiuchi, A, Nakagawa, A, Yokoi, D, Murakami, T, Honma, M, Wakatsuki, S, Tanaka, I.
Deposit date:2000-05-24
Release date:2000-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus.
J.Biol.Chem., 275, 2000
5B56
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BU of 5b56 by Molmil
Crystal structure of HIV-1 VPR C-Terminal domain and DIBB-M-Importin-Alpha2 complex
Descriptor: Importin subunit alpha-1, Protein Vpr
Authors:Miyatake, H, Sanjoh, A, Matusda, G, Murakami, T, Murakami, H, Hagiwara, K, Yokoyama, M, Sato, H, Miyamoto, Y, Dohmae, N, Aida, Y.
Deposit date:2016-04-25
Release date:2016-06-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Mechanism of HIV-1 Vpr for Binding to Importin-alpha
J.Mol.Biol., 428, 2016
3G7C
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BU of 3g7c by Molmil
Structure of the Phosphorylation Mimetic of Occludin C-term Tail
Descriptor: Occludin
Authors:Tash, B.R, Sundstrom, J.M, Murakami, T, Flanagan, J.M, Bewley, M.C, Antonetii, D.A.
Deposit date:2009-02-09
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification and analysis of occludin phosphosites: a combined mass spectrometry and bioinformatics approach.
J.PROTEOME RES., 8, 2009
8H1W
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BU of 8h1w by Molmil
Serine Palmitoyltransferase from Sphingobacterium multivorum
Descriptor: 1,2-ETHANEDIOL, Serine palmitoyltransferase
Authors:Takahashi, A, Murakami, T, Katayama, A, Miyahara, I, Kamiya, N, Ikushiro, H, Yano, T.
Deposit date:2022-10-04
Release date:2023-08-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum.
J.Biol.Chem., 299, 2023
3O7R
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BU of 3o7r by Molmil
Crystal structure of Ru(p-cymene)/apo-H49AFr
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
Authors:Takezawa, Y, Bockmann, P, Sugi, N, Wang, Z, Abe, S, Murakami, T, Hikage, T, Erker, G, Watanabe, Y, Kitagawa, S, Ueno, T.
Deposit date:2010-07-31
Release date:2011-04-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Incorporation of organometallic Ru complexes into apo-ferritin cage.
J.CHEM.SOC.,DALTON TRANS., 40, 2011
3O7S
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BU of 3o7s by Molmil
Crystal structure of Ru(p-cymene)/apo-Fr
Descriptor: 1,2-ETHANEDIOL, 1-methyl-4-(1-methylethyl)benzene, CADMIUM ION, ...
Authors:Takezawa, Y, Bockmann, P, Sugi, N, Wang, Z, Abe, S, Murakami, T, Hikage, T, Erker, G, Watanabe, Y, Kitagawa, S, Ueno, T.
Deposit date:2010-07-31
Release date:2011-04-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Incorporation of organometallic Ru complexes into apo-ferritin cage.
J.Chem.Soc.,Dalton Trans., 40, 2011
6KGB
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BU of 6kgb by Molmil
Crystal structure of E61K mutated transthyretin
Descriptor: CALCIUM ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2019-07-11
Release date:2020-07-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A low amyloidogenic E61K transthyretin mutation may cause familial amyloid polyneuropathy.
J.Neurochem., 156, 2021
1AXJ
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BU of 1axj by Molmil
FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F), NMR, 20 STRUCTURES
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-BINDING PROTEIN
Authors:Liepinsh, E, Otting, G.
Deposit date:1997-10-16
Release date:1998-01-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Nat.Struct.Biol., 4, 1997
7P6S
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BU of 7p6s by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form II)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2, pentane-1,5-diol
Authors:Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
Deposit date:2021-07-17
Release date:2022-03-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
7P6T
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BU of 7p6t by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form III)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-ethyl-2-(hydroxymethyl)propane-1,3-diol, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2
Authors:Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
Deposit date:2021-07-17
Release date:2022-03-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
7P6R
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BU of 7p6r by Molmil
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form I)
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2
Authors:Stsiapanava, A, Tunyasuvunakool, K, Jumper, J, de Sanctis, D, Jovine, L.
Deposit date:2021-07-17
Release date:2022-03-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH.
Nat.Struct.Mol.Biol., 29, 2022
1J0D
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BU of 1j0d by Molmil
ACC deaminase mutant complexed with ACC
Descriptor: 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID
Authors:Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I.
Deposit date:2002-11-12
Release date:2003-05-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
1J0E
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BU of 1j0e by Molmil
ACC deaminase mutant reacton intermediate
Descriptor: 1-AMINOCYCLOPROPANECARBOXYLIC ACID, 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE
Authors:Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I.
Deposit date:2002-11-12
Release date:2003-05-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
3NTC
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BU of 3ntc by Molmil
Crystal structure of KD-247 Fab, an anti-V3 antibody that inhibits HIV-1 Entry
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Fab heavy chain, ...
Authors:Sarafianos, S.G, Kirby, K.A.
Deposit date:2010-07-03
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis of clade-specific HIV-1 neutralization by humanized anti-V3 monoclonal antibody KD-247.
Faseb J., 29, 2015

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