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1NFT
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BU of 1nft by Molmil
OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM
Descriptor: FE (III) ION, NITRILOTRIACETIC ACID, PROTEIN (OVOTRANSFERRIN), ...
Authors:Mizutani, K, Yamashita, H, Kurokawa, H, Mikami, B, Hirose, M.
Deposit date:1999-01-07
Release date:1999-01-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe.
J.Biol.Chem., 274, 1999
1IQ7
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BU of 1iq7 by Molmil
Ovotransferrin, C-Terminal Lobe, Apo Form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ovotransferrin, SULFATE ION
Authors:Mizutani, K, Muralidhara, B.K, Yamashita, H, Tabata, S, Mikami, B, Hirose, M.
Deposit date:2001-07-06
Release date:2001-11-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Anion-mediated Fe3+ release mechanism in ovotransferrin C-lobe: a structurally identified SO4(2-) binding site and its implications for the kinetic pathway.
J.Biol.Chem., 276, 2001
1IEJ
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BU of 1iej by Molmil
OVOTRANSFERRIN, N-TERMINAL LOBE, HOLO FORM, AT 1.65 A RESOLUTION
Descriptor: CARBONATE ION, FE (III) ION, OVOTRANSFERRIN
Authors:Mizutani, K, Mikami, B, Hirose, M.
Deposit date:2001-04-10
Release date:2001-06-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Domain closure mechanism in transferrins: new viewpoints about the hinge structure and motion as deduced from high resolution crystal structures of ovotransferrin N-lobe.
J.Mol.Biol., 309, 2001
3VUP
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BU of 3vup by Molmil
Beta-1,4-mannanase from the common sea hare Aplysia kurodai
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-1,4-mannanase, SULFATE ION
Authors:Mizutani, K, Tsuchiya, S, Toyoda, M, Nanbu, Y, Tominaga, K, Yuasa, K, Takahashi, N, Tsuji, A, Mikami, B.
Deposit date:2012-07-04
Release date:2012-10-17
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Structure of beta-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 A resolution.
Acta Crystallogr.,Sect.F, 68, 2012
1V9F
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BU of 1v9f by Molmil
Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli
Descriptor: PHOSPHATE ION, Ribosomal large subunit pseudouridine synthase D
Authors:Mizutani, K, Machida, Y, Unzai, S, Park, S.-Y, Tame, J.R.H.
Deposit date:2004-01-26
Release date:2004-05-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
1TFA
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BU of 1tfa by Molmil
OVOTRANSFERRIN, N-TERMINAL LOBE, APO FORM
Descriptor: PROTEIN (OVOTRANSFERRIN), SULFATE ION
Authors:Mizutani, K, Yamashita, H, Mikami, B, Hirose, M.
Deposit date:1999-01-07
Release date:1999-01-13
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe.
J.Biol.Chem., 274, 1999
3VM5
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BU of 3vm5 by Molmil
Recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris
Descriptor: CALCIUM ION, CHLORIDE ION, alpha-amylase
Authors:Mizutani, K, Toyoda, M, Mikami, B.
Deposit date:2011-12-08
Release date:2012-06-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural and functional characterization of recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris.
Biochim.Biophys.Acta, 1824, 2012
3ABG
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BU of 3abg by Molmil
X-ray Crystal Analysis of Bilirubin Oxidase from Myrothecium verrucaria at 2.3 angstrom Resolution using a Twin Crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Bilirubin oxidase, COPPER (II) ION, ...
Authors:Mizutani, K, Toyoda, M, Sagara, K, Takahashi, N, Sato, A, Kamitaka, Y, Tsujimura, S, Nakanishi, Y, Sugiura, T, Yamaguchi, S, Kano, K, Mikami, B.
Deposit date:2009-12-10
Release date:2010-08-18
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 A resolution using a twinned crystal
Acta Crystallogr.,Sect.F, 66, 2010
3AOU
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BU of 3aou by Molmil
Structure of the Na+ unbound rotor ring modified with N,N f-Dicyclohexylcarbodiimide of the Na+-transporting V-ATPase
Descriptor: DICYCLOHEXYLUREA, UNDECYL-MALTOSIDE, V-type sodium ATPase subunit K
Authors:Mizutani, K, Yamamoto, M, Yamato, I, Kakinuma, Y, Shirouzu, M, Yokoyama, S, Iwata, S, Murata, T.
Deposit date:2010-10-06
Release date:2011-08-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase.
Proc.Natl.Acad.Sci.USA, 108, 2011
2D3I
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BU of 2d3i by Molmil
Crystal Structure of Aluminum-Bound Ovotransferrin at 2.15 Angstrom Resolution
Descriptor: ALUMINUM ION, BICARBONATE ION, Ovotransferrin
Authors:Mizutani, K, Mikami, B, Aibara, S, Hirose, M.
Deposit date:2005-09-28
Release date:2005-11-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of aluminium-bound ovotransferrin at 2.15 Angstroms resolution.
Acta Crystallogr.,Sect.D, 61, 2005
5AZD
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BU of 5azd by Molmil
Crystal structure of thermophilic rhodopsin.
Descriptor: Bacteriorhodopsin
Authors:Mizutani, K, Hashimoto, N, Tsukamoto, T, Yamashita, K, Yamamoto, M, Sudo, Y, Murata, T.
Deposit date:2015-09-30
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray crystallographic structure of thermophilic rhodopsin: implications for high thermal stability and optogenetic availability.
To Be Published
1V9K
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BU of 1v9k by Molmil
The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli
Descriptor: Ribosomal large subunit pseudouridine synthase C, SULFATE ION
Authors:Machida, Y, Mizutani, K, Unzai, S, Park, S.-Y, Tame, J.R.H.
Deposit date:2004-01-26
Release date:2004-05-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
7FCI
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BU of 7fci by Molmil
human NTCP in complex with YN69083 Fab
Descriptor: Fab Heavy chain, Fab Light chain, Sodium/bile acid cotransporter
Authors:Park, J.H, Iwamoto, M, Yun, J.H, Uchikubo-Kamo, T, Son, D, Jin, Z, Yoshida, H, Ohki, M, Ishimoto, N, Mizutani, K, Oshima, M, Muramatsu, M, Wakita, T, Shirouzu, M, Liu, K, Uemura, T, Nomura, N, Iwata, S, Watashi, K, Tame, J.R.H, Nishizawa, T, Lee, W, Park, S.Y.
Deposit date:2021-07-14
Release date:2022-05-25
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into the HBV receptor and bile acid transporter NTCP.
Nature, 606, 2022
5CL2
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BU of 5cl2 by Molmil
Crystal structure of Spo0M, sporulation control protein, from Bacillus subtilis.
Descriptor: SODIUM ION, Sporulation-control protein spo0M
Authors:Sonoda, Y, Mizutani, K, Mikami, B.
Deposit date:2015-07-16
Release date:2015-12-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Spo0M, a sporulation-control protein from Bacillus subtilis.
Acta Crystallogr.,Sect.F, 71, 2015
5KNC
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BU of 5knc by Molmil
Crystal structure of the 3 ADP-bound V1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.015 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KNB
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BU of 5knb by Molmil
Crystal structure of the 2 ADP-bound V1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.251 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KND
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BU of 5knd by Molmil
Crystal structure of the Pi-bound V1 complex
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.888 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5XCA
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BU of 5xca by Molmil
Crystal structure of GH45 endoglucanase EG27II D137A mutant in complex with cellobiose
Descriptor: Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
5XC8
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BU of 5xc8 by Molmil
Crystal structure of GH45 endoglucanase EG27II at pH5.5, in complex with cellobiose
Descriptor: Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
5XBX
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BU of 5xbx by Molmil
Crystal structure of GH45 endoglucanase EG27II in complex with cellobiose
Descriptor: Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B.
Deposit date:2017-03-21
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
5XC4
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BU of 5xc4 by Molmil
Crystal structure of GH45 endoglucanase EG27II at pH4.0, in complex with cellobiose
Descriptor: Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
5XC9
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BU of 5xc9 by Molmil
Crystal structure of GH45 endoglucanase EG27II at pH8.0, in complex with cellobiose
Descriptor: Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B.
Deposit date:2017-03-22
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
8Y1M
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BU of 8y1m by Molmil
Xylanase R from Bacillus sp. TAR-1 complexed with xylobiose.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Nakamura, T, Kuwata, K, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K.
Deposit date:2024-01-25
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR.
Sci Rep, 14, 2024
8XY0
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BU of 8xy0 by Molmil
Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Endo-1,4-beta-xylanase A
Authors:Nakamura, T, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K.
Deposit date:2024-01-19
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR.
Sci Rep, 14, 2024
8YWO
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BU of 8ywo by Molmil
Crystal structure of L-azetidine-2-carboxylate hydrolase soaked in (S)-azetidine-2-carboxylic acid
Descriptor: (2S)-azetidine-2-carboxylic acid, (S)-2-haloacid dehalogenase
Authors:Toyoda, M, Mizutani, K, Mikami, B, Wackett, L.P, Esaki, N, Kurihara, T.
Deposit date:2024-03-31
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Research for the crystal structure of L-azetidine-2-carboxylate hydrolase
To Be Published

 

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