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2FK4
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BU of 2fk4 by Molmil
Solution structure of the C-terminal zinc binding domain of the HPV16 E6 oncoprotein
Descriptor: Protein E6, ZINC ION
Authors:Nomine, Y, Charbonnier, S.
Deposit date:2006-01-04
Release date:2006-01-24
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural and functional analysis of E6 oncoprotein: insights in the molecular pathways of human papillomavirus-mediated pathogenesis
Mol.Cell, 21, 2006
2KRE
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BU of 2kre by Molmil
Solution structure of E4B/UFD2A U-Box domain
Descriptor: Ubiquitin conjugation factor E4 B
Authors:Nomine, Y, Wasielewski, E, Botuyan, M, Mer, G.
Deposit date:2009-12-16
Release date:2009-12-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4.
Structure, 18, 2010
6KX0
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BU of 6kx0 by Molmil
Crystal structure of SN-101 mAb non-liganded form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Fab Fragment-SN-101-Heavy chain, Fab Fragment-SN-101-Light chain
Authors:Wakui, H, Tanaka, Y, Kato, K, Ose, T, Matsumoto, I, Min, Y, Tachibana, T, Nishimura, S.-I.
Deposit date:2019-09-09
Release date:2020-07-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.404 Å)
Cite:A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes
Chem Sci, 11, 2020
6KX1
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BU of 6kx1 by Molmil
Crystal structure of SN-101 mAb in complex with MUC1 glycopeptide
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Fab Fragment-SN-101-Heavy chain, Fab Fragment-SN-101-Light chain, ...
Authors:Wakui, H, Tanaka, Y, Kato, K, Ose, T, Matsumoto, I, Min, Y, Tachibana, T, Nishimura, S.-I.
Deposit date:2019-09-09
Release date:2020-07-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.773 Å)
Cite:A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes
Chem Sci, 11, 2020
2KPL
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BU of 2kpl by Molmil
MAGI-1 PDZ1 / E6CT
Descriptor: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1, Protein E6
Authors:Charbonnier, S, Nomine, Y, Ramirez, J, Luck, K, Stote, R.H, Trave, G, Kieffer, B, Atkinson, R.A.
Deposit date:2009-10-16
Release date:2010-10-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The structural and dynamic response of MAGI-1 PDZ1 with non-canonical domain boundaries to binding of human papillomavirus (HPV) E6
J.Mol.Biol., 2011
2KPK
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BU of 2kpk by Molmil
MAGI-1 PDZ1
Descriptor: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
Authors:Charbonnier, S, Nomine, Y, Ramirez, J, Luck, K, Stote, R.H, Trave, G, Kieffer, B, Atkinson, R.A.
Deposit date:2009-10-16
Release date:2010-10-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The structural and dynamic response of MAGI-1 PDZ1 with non-canonical domain boundaries to binding of human papillomavirus (HPV) E6
J.Mol.Biol., 2011
4TKC
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BU of 4tkc by Molmil
Japanese Marasmius oreades lectin complexed with mannose
Descriptor: GLYCEROL, Mannose recognizing lectin, alpha-D-mannopyranose, ...
Authors:Noma, Y, Shimokawa, M, Maeganeku, C, Motoshima, H, Watanabe, K, Minami, Y, Yagi, F.
Deposit date:2014-05-26
Release date:2015-06-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Structure of Japanese Marasmius oreades lectin complexed with mannose.
To Be Published
5F4N
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BU of 5f4n by Molmil
Multi-parameter lead optimization to give an oral CHK1 inhibitor clinical candidate: (R)-5-((4-((morpholin-2-ylmethyl)amino)-5-(trifluoromethyl)pyridin-2-yl)amino)pyrazine-2-carbonitrile (CCT245737)
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Serine/threonine-protein kinase Chk1, ...
Authors:Collins, I, Garrett, M.D, van Montfort, R, Osborne, J.D, Matthews, T.P, McHardy, T, Proisy, N, Cheung, K.J, Lainchbury, M, Brown, N, Walton, M.I, Eve, P.D, Boxall, K.J, Hayes, A, Henley, A.T, Valenti, M.R, De Haven Brandon, A.K, Box, G, Westwood, I.M, Jamin, Y, Robinson, S.P, Leonard, P, Reader, J.C, Aherne, G.W, Raynaud, F.I, Eccles, S.A.
Deposit date:2015-12-03
Release date:2016-05-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Multiparameter Lead Optimization to Give an Oral Checkpoint Kinase 1 (CHK1) Inhibitor Clinical Candidate: (R)-5-((4-((Morpholin-2-ylmethyl)amino)-5-(trifluoromethyl)pyridin-2-yl)amino)pyrazine-2-carbonitrile (CCT245737).
J.Med.Chem., 59, 2016
4PDT
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BU of 4pdt by Molmil
Japanese Marasmius oreades lectin
Descriptor: Mannose recognizing lectin, SULFATE ION
Authors:Noma, Y, Shimokawa, M, Maeganeku, C, Motoshima, H, Watanabe, K, Minami, Y, Yagi, F.
Deposit date:2014-04-22
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The structure of Japanese Marasmius oreades lectin at 1.40 Angstroms resolution.
To Be Published
5ZV2
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BU of 5zv2 by Molmil
FGFR-1 in complex with ligand lenvatinib
Descriptor: 4-{3-chloro-4-[(cyclopropylcarbamoyl)amino]phenoxy}-7-methoxyquinoline-6-carboxamide, Fibroblast growth factor receptor 1
Authors:Matsuki, M, Hoshi, T, Yamamoto, Y, Ikemori-Kawada, M, Minoshima, Y, Funahashi, Y, Matsui, J.
Deposit date:2018-05-09
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Lenvatinib inhibits angiogenesis and tumor fibroblast growth factor signaling pathways in human hepatocellular carcinoma models.
Cancer Med, 7, 2018
7C4N
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BU of 7c4n by Molmil
Ancestral L-amino acid oxidase (AncLAAO-N5) L-Phe binding form
Descriptor: Ancestral L-amino acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, PHENYLALANINE
Authors:Nakano, S, Minamino, Y, Karasuda, H, Ito, S.
Deposit date:2020-05-18
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ancestral L-amino acid oxidases for deracemization and stereoinversion of amino acids
Commun Chem, 3, 2020
7C4L
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BU of 7c4l by Molmil
Anncestral L-amino acid oxidase (AncLAAO-N5) L-Gln binding form
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLUTAMINE, L-amino acid oxidase
Authors:Nakano, S, Minamino, Y, Karasuda, H, Ito, S.
Deposit date:2020-05-18
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Ancestral L-amino acid oxidases for deracemization and stereoinversion of amino acids
Commun Chem, 3, 2020
7C4M
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BU of 7c4m by Molmil
Ancestral L-amino acid oxidase (AncLAAO-N5) L-Trp binding form
Descriptor: Ancestral L-amino acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, TRYPTOPHAN
Authors:Nakano, S, Minamino, Y, Karasuda, H, Ito, S.
Deposit date:2020-05-18
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ancestral L-amino acid oxidases for deracemization and stereoinversion of amino acids
Commun Chem, 3, 2020
7C4K
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BU of 7c4k by Molmil
Ancestral L-amino acid oxidase (AncLAAO-N5) ligand free form
Descriptor: Ancestral L-amino acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nakano, S, Minamino, Y, Karasuda, H, Ito, S.
Deposit date:2020-05-18
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ancestral L-amino acid oxidases for deracemization and stereoinversion of amino acids
Commun Chem, 3, 2020
2D2A
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BU of 2d2a by Molmil
Crystal Structure of Escherichia coli SufA Involved in Biosynthesis of Iron-sulfur Clusters
Descriptor: SufA protein
Authors:Wada, K, Hasegawa, Y, Gong, Z, Minami, Y, Fukuyama, K, Takahashi, Y.
Deposit date:2005-09-05
Release date:2005-12-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Escherichia coli SufA involved in biosynthesis of iron-sulfur clusters: Implications for a functional dimer
Febs Lett., 579, 2005
2D3W
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BU of 2d3w by Molmil
Crystal Structure of Escherichia coli SufC, an ATPase compenent of the SUF iron-sulfur cluster assembly machinery
Descriptor: Probable ATP-dependent transporter sufC
Authors:Kitaoka, S, Wada, K, Hasegawa, Y, Minami, Y, Takahashi, Y, Fukuyama, K.
Deposit date:2005-10-03
Release date:2006-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery
Febs Lett., 580, 2006
2ZV2
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BU of 2zv2 by Molmil
Crystal structure of human calcium/calmodulin-dependent protein kinase kinase 2, beta, CaMKK2 kinase domain in complex with STO-609
Descriptor: 7-oxo-7H-benzimidazo[2,1-a]benz[de]isoquinoline-3-carboxylic acid, Calcium/calmodulin-dependent protein kinase kinase 2
Authors:Yoshikawa, S, Kukimoto-niino, M, Shirouzu, M, Suzuki, A, Lee, S, Minokoshi, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-31
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Ca2+/calmodulin-dependent protein kinase kinase in complex with the inhibitor STO-609
J.Biol.Chem., 286, 2011
2EIX
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BU of 2eix by Molmil
The Structure of Physarum polycephalum cytochrome b5 reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, IODIDE ION, ...
Authors:Kim, S.W, Suga, M, Ogasahara, K, Ikegami, T, Minami, Y, Yubisui, T, Tsukihara, T.
Deposit date:2007-03-14
Release date:2007-04-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structure of Physarum polycephalum cytochrome b5 reductase at 1.56 A resolution.
Acta Crystallogr.,Sect.F, 63, 2007
2B02
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BU of 2b02 by Molmil
Crystal Structure of ARNT PAS-B Domain
Descriptor: Aryl hydrocarbon receptor nuclear translocator
Authors:Lee, J, Botuyan, M.V, Nomine, Y, Ohh, M, Thompson, J.R, Mer, G.
Deposit date:2005-09-12
Release date:2006-10-24
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure and Binding Properties of ARNT PAS-B Heterodimerization Domain
To be Published
3ZJB
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BU of 3zjb by Molmil
The structure of the TRAF domain of human TRAF4
Descriptor: CHLORIDE ION, TNF RECEPTOR-ASSOCIATED FACTOR 4
Authors:McEwen, A.G, Poussin-Courmontagne, P, Rousseau, A, Rogna, D, Nomine, Y, Rio, M.-C, Tomasetto, C, Alpy, F.
Deposit date:2013-01-17
Release date:2013-12-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Traf4 is a Novel Phosphoinositide-Binding Protein Modulating Tight Junctions and Favoring Cell Migration.
Plos Biol., 11, 2013
2YZQ
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BU of 2yzq by Molmil
Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
Descriptor: Putative uncharacterized protein PH1780, S-ADENOSYLMETHIONINE
Authors:Kanagawa, M, Minami, Y, Watanabe, N, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-06
Release date:2007-11-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
To be Published
1IO5
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BU of 1io5 by Molmil
HYDROGEN AND HYDRATION OF HEN EGG-WHITE LYSOZYME DETERMINED BY NEUTRON DIFFRACTION
Descriptor: LYSOZYME C
Authors:Niimura, N, Minezaki, Y, Nonaka, T, Castagna, J.C, Cipriani, F, Hoeghoej, P, Lehmann, M.S, Wilkinson, C.
Deposit date:2001-01-14
Release date:2001-02-07
Last modified:2023-10-25
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Neutron Laue diffractometry with an imaging plate provides an effective data collection regime for neutron protein crystallography.
Nat.Struct.Biol., 4, 1997
5WYA
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BU of 5wya by Molmil
Structure of amino acid racemase, 2.65 A
Descriptor: (2S,3S)-3-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid, DIMETHYL SULFOXIDE, Isoleucine 2-epimerase
Authors:Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T.
Deposit date:2017-01-11
Release date:2017-04-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri.
Acta Crystallogr D Struct Biol, 73, 2017
7P6F
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BU of 7p6f by Molmil
1.93 A resolution X-ray crystal structure of the transcriptional regulator SrnR from Streptomyces griseus
Descriptor: ACETATE ION, SODIUM ION, Transcriptional regulator SrnR
Authors:Mazzei, L, Ciurli, S.
Deposit date:2021-07-16
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure, dynamics, and function of SrnR, a transcription factor for nickel-dependent gene expression.
Metallomics, 13, 2021
6KNE
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BU of 6kne by Molmil
The C-terminal Domain of Translation Initiation Factor 5 at high pH
Descriptor: Translation initiation factor eIF5
Authors:Jian, Y, YuXin, Y, Min, Y.
Deposit date:2019-08-05
Release date:2020-06-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:The pH-dependent conformational change of eukaryotic translation initiation factor 5: Insights into partner-binding manner.
Biochem.Biophys.Res.Commun., 519, 2019

 

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