Author results

1AP8
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TRANSLATION INITIATION FACTOR EIF4E IN COMPLEX WITH M7GDP, NMR, 20 STRUCTURES
Descriptor:TRANSLATION INITIATION FACTOR EIF4E, 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE
Authors:Matsuo, H., Li, H., Mcguire, A.M., Fletcher, M., Gingras, A.C., Sonenberg, N., Wagner, G.
Deposit date:1997-07-25
Release date:1998-01-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of translation factor eIF4E bound to m7GDP and interaction with 4E-binding protein.
Nat.Struct.Biol., 4, 1997
1COP
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THREE-DIMENSIONAL DIMER STRUCTURE OF THE LAMBDA-CRO REPRESSOR IN SOLUTION AS DETERMINED BY HETERONUCLEAR MULTIDIMENSIONAL NMR
Descriptor:CRO REPRESSOR
Authors:Matsuo, H., Shirakawa, M., Kyogoku, Y.
Deposit date:1995-06-23
Release date:1995-10-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional dimer structure of the lambda-Cro repressor in solution as determined by heteronuclear multidimensional NMR.
J.Mol.Biol., 254, 1995
2JX3
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NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DEK
Descriptor:Protein DEK
Authors:Matsuo, H., Devany, M.
Deposit date:2007-11-02
Release date:2008-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR structure of the N-terminal domain of the human DEK protein
Protein Sci., 17, 2008
2ZGY
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PARM WITH GDP
Descriptor:Plasmid segregation protein parM, MAGNESIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Popp, D., Narita, A., Oda, T., Fujisawa, T., Matsuo, H., Nitanai, Y., Iwasa, M., Maeda, K., Onishi, H., Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZGZ
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PARM WITH GMPPNP
Descriptor:Plasmid segregation protein parM, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Popp, D., Narita, A., Oda, T., Fujisawa, T., Matsuo, H., Nitanai, Y., Iwasa, M., Maeda, K., Onishi, H., Maeda, Y.
Deposit date:2008-01-30
Release date:2008-02-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZHC
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PARM FILAMENT
Descriptor:Plasmid segregation protein parM, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
Authors:Popp, D., Narita, A., Oda, T., Fujisawa, T., Matsuo, H., Nitanai, Y., Iwasa, M., Maeda, K., Onishi, H., Maeda, Y.
Deposit date:2008-02-04
Release date:2008-02-26
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (23.799999 Å)
Cite:Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
3CRD
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NMR STRUCTURE OF THE RAIDD CARD DOMAIN, 15 STRUCTURES
Descriptor:RAIDD
Authors:Chou, J.J., Matsuo, H., Duan, H., Wagner, G.
Deposit date:1998-07-24
Release date:1999-02-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment.
Cell(Cambridge,Mass.), 94, 1998
1Q1V
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STRUCTURE OF THE ONCOPROTEIN DEK: A PUTATIVE DNA-BINDING DOMAIN RELATED TO THE WINGED HELIX MOTIF
Descriptor:DEK protein
Authors:Devany, M., Kotharu, N.P., Matsuo, H.
Deposit date:2003-07-22
Release date:2004-08-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution NMR structure of the C-terminal domain of the human protein DEK
PROTEIN SCI., 13, 2004
2JYW
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SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF APOBEC3G
Descriptor:DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Chen, K., Harjes, E., Gross, P.J., Fahmy, A., Lu, Y., Shindo, K., Harris, R.S., Matsuo, H.
Deposit date:2007-12-20
Release date:2008-02-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G.
Nature, 452, 2008
2KEM
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EXTENDED STRUCTURE OF CITIDINE DEAMINASE DOMAIN OF APOBEC3G
Descriptor:DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Harjes, E., Gross, P.J., Chen, K., Lu, Y., Shindo, K., Nowarski, R., Gross, J.D., Kotler, M., Harris, R.S., Matsuo, H.
Deposit date:2009-01-30
Release date:2009-06-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model
J.Mol.Biol., 389, 2009
2MZZ
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NMR STRUCTURE OF APOBEC3G NTD VARIANT, SNTD
Descriptor:Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3G variant, ZINC ION
Authors:Kouno, T., Luengas, E.M., Shigematu, M., Shandilya, S.M.D., Zhang, J., Chen, L., Hara, M., Schiffer, C.A., Harris, R.S., Matsuo, H.
Deposit date:2015-02-28
Release date:2015-05-13
Last modified:2015-07-01
Method:SOLUTION NMR
Cite:Structure of the Vif-binding domain of the antiviral enzyme APOBEC3G.
Nat.Struct.Mol.Biol., 22, 2015
5KEG
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CRYSTAL STRUCTURE OF APOBEC3A IN COMPLEX WITH A SINGLE-STRANDED DNA
Descriptor:DNA dC->dU-editing enzyme APOBEC-3A, DNA (5'-D(*TP*TP*CP*TP*T)-3'), ZINC ION, ...
Authors:Kouno, T., Hilbert, B.J., Silvas, T., Royer, W.E., Matsuo, H., Schiffer, C.A.
Deposit date:2016-06-09
Release date:2017-05-10
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity.
Nat Commun, 8, 2017
6BUX
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CRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA
Descriptor:Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain, DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3'), ZINC ION, ...
Authors:Maiti, A., Matsuo, H.
Deposit date:2017-12-11
Release date:2018-07-18
Method:X-RAY DIFFRACTION (1.856 Å)
Cite:Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA.
Nat Commun, 9, 2018
2LQZ
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STRUCTURE OF THE RNA CLAW OF THE DNA PACKAGING MOTOR OF BACTERIOPHAGE 29
Descriptor:RNA (27-MER)
Authors:Harjes, E.J., Matsuo, H.J., Kitamura, A.J.
Deposit date:2012-03-19
Release date:2012-08-01
Last modified:2012-11-07
Method:SOLUTION NMR
Cite:Structure of the RNA claw of the DNA packaging motor of bacteriophage 29.
Nucleic Acids Res., 40, 2012
1IS1
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CRYSTAL STRUCTURE OF RIBOSOME RECYCLING FACTOR FROM VIBRIO PARAHAEMOLYTICUS
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Nakano, H., Yamaichi, Y., Uchiyama, S., Yoshida, T., Nishina, K., Kato, H., Ohkubo, T., Honda, T., Yamagata, Y., Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
3IR2
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CRYSTAL STRUCTURE OF THE APOBEC3G CATALYTIC DOMAIN
Descriptor:DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION, CHLORIDE ION, ...
Authors:Shandilya, S.M.D., Schiffer, C.A.
Deposit date:2009-08-21
Release date:2010-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of the APOBEC3G Catalytic Domain Reveals Potential Oligomerization Interfaces.
Structure, 18, 2010
4IOU
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CRYSTAL STRUCTURE OF THE HIV-1 VIF BINDING, CATALYTICALLY ACTIVE DOMAIN OF APOBEC3F
Descriptor:DNA dC->dU-editing enzyme APOBEC-3F, ZINC ION
Authors:Bohn, M., Shandilya, S.M.D., Schiffer, C.A.
Deposit date:2013-01-08
Release date:2013-05-29
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Crystal Structure of the DNA Cytosine Deaminase APOBEC3F: The Catalytically Active and HIV-1 Vif-Binding Domain.
Structure, 21, 2013
1QTO
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1.5 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS
Descriptor:BLEOMYCIN-BINDING PROTEIN
Authors:Kawano, Y., Kumagai, T., Muta, K., Matoba, Y., Davies, J., Sugiyama, M.
Deposit date:1999-06-28
Release date:2000-06-28
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The 1.5 A crystal structure of a bleomycin resistance determinant from bleomycin-producing Streptomyces verticillus.
J.Mol.Biol., 295, 2000
1VFH
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CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM D-CYCLOSERINE PRODUCING STREPTOMYCES LAVENDULAE
Descriptor:alanine racemase, PYRIDOXAL-5'-PHOSPHATE
Authors:Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.
Deposit date:2004-04-13
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1VFS
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CRYSTAL STRUCTURE OF D-CYCLOSERINE-BOUND FORM OF ALANINE RACEMASE FROM D-CYCLOSERINE-PRODUCING STREPTOMYCES LAVENDULAE
Descriptor:alanine racemase, CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
Authors:Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.
Deposit date:2004-04-19
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1VFT
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CRYSTAL STRUCTURE OF L-CYCLOSERINE-BOUND FORM OF ALANINE RACEMASE FROM D-CYCLOSERINE-PRODUCING STREPTOMYCES LAVENDULAE
Descriptor:alanine racemase, CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
Authors:Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.
Deposit date:2004-04-19
Release date:2004-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004