Author results

1AT0
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17-KDA FRAGMENT OF HEDGEHOG C-TERMINAL AUTOPROCESSING DOMAIN
Descriptor:17-HEDGEHOG
Authors:Hall, T.M.T., Porter, J.A., Young, K.E., Koonin, E.V., Beachy, P.A., Leahy, D.J.
Deposit date:1997-08-15
Release date:1997-11-12
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a Hedgehog autoprocessing domain: homology between Hedgehog and self-splicing proteins.
Cell(Cambridge,Mass.), 91, 1997
1D1R
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NMR SOLUTION STRUCTURE OF THE PRODUCT OF THE E. COLI YCIH GENE.
Descriptor:HYPOTHETICAL 11.4 KD PROTEIN YCIH IN PYRF-OSMB INTERGENIC REGION
Authors:Cort, J.R., Koonin, E.V., Bash, P.A., Kennedy, M.A.
Deposit date:1999-09-20
Release date:1999-10-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A phylogenetic approach to target selection for structural genomics: solution structure of YciH.
Nucleic Acids Res., 27, 1999
1EX2
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CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAF PROTEIN
Descriptor:PROTEIN MAF, SUCROSE, PHOSPHATE ION
Authors:Minasov, G., Teplova, M., Stewart, G.C., Koonin, E.V., Anderson, W.F., Egli, M., Midwest Center for Structural Genomics (MCSG)
Deposit date:2000-04-28
Release date:2000-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP.
Proc.Natl.Acad.Sci.USA, 97, 2000
1EXC
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CRYSTAL STRUCTURE OF B. SUBTILIS MAF PROTEIN COMPLEXED WITH D-(UTP)
Descriptor:PROTEIN MAF, SODIUM ION, DEOXYURIDINE-5'-TRIPHOSPHATE
Authors:Minasov, G., Teplova, M., Stewart, G.C., Koonin, E.V., Anderson, W.F., Egli, M., Midwest Center for Structural Genomics (MCSG)
Deposit date:2000-05-02
Release date:2000-06-14
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP.
Proc.Natl.Acad.Sci.USA, 97, 2000
2C5S
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CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS THII, A TRNA-MODIFYING ENZYME CONTAINING THE PREDICTED RNA-BINDING THUMP DOMAIN
Descriptor:PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII, ADENOSINE MONOPHOSPHATE
Authors:Waterman, D.G., Ortiz-Lombardia, M., Fogg, M.J., Koonin, E.V., Antson, A.A.
Deposit date:2005-11-01
Release date:2005-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Bacillus Anthracis Thii, a tRNA-Modifying Enzyme Containing the Predicted RNA- Binding Thump Domain.
J.Mol.Biol., 356, 2006
2YCB
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STRUCTURE OF THE ARCHAEAL BETA-CASP PROTEIN WITH N-TERMINAL KH DOMAINS FROM METHANOTHERMOBACTER THERMAUTOTROPHICUS
Descriptor:CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, ZINC ION, PHOSPHATE ION, ...
Authors:Silva, A.P.G., Chechik, M., Byrne, R.T., Waterman, D.G., Ng, C.L., Dodson, E.J., Koonin, E.V., Antson, A.A., Smits, C.
Deposit date:2011-03-13
Release date:2011-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure and Activity of a Novel Archaeal Beta-Casp Protein with N-Terminal Kh Domains.
Structure, 19, 2011
4YCO
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E. COLI DIHYDROURIDINE SYNTHASE C (DUSC) IN COMPLEX WITH TRNAPHE
Descriptor:tRNA-dihydrouridine synthase C, tRNAphe, FLAVIN MONONUCLEOTIDE, ...
Authors:Byrne, R.T., Jenkins, H.T., Peters, D.T., Whelan, F., Stowell, J., Aziz, N., Kasatsky, P., Rodnina, M.V., Koonin, E.V., Konevega, A.L., Antson, A.A.
Deposit date:2015-02-20
Release date:2015-04-22
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YCP
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E. COLI DIHYDROURIDINE SYNTHASE C (DUSC) IN COMPLEX WITH TRNATRP
Descriptor:tRNA-dihydrouridine synthase C, tRNATrp, FLAVIN MONONUCLEOTIDE, ...
Authors:Byrne, R.T., Jenkins, H.T., Peters, D.T., Whelan, F., Stowell, J., Aziz, N., Kasatsky, P., Rodnina, M.V., Koonin, E.V., Konevega, A.L., Antson, A.A.
Deposit date:2015-02-20
Release date:2015-04-22
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
6DD5
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CRYSTAL STRUCTURE OF THE CAS6 DOMAIN OF MARINOMONAS MEDITERRANEA MMB-1 CAS6-RT-CAS1 FUSION PROTEIN
Descriptor:MMB-1 Cas6 Fused to Maltose Binding Protein,CRISPR-associated endonuclease Cas1, MALTOSE, GLYCEROL, ...
Authors:Stamos, J.L., Mohr, G., Silas, S., Makarova, K.S., Markham, L.M., Yao, J., Lucas-Elio, P., Sanchez-Amat, A., Fire, A.Z., Koonin, E.V., Lambowitz, A.M.
Deposit date:2018-05-09
Release date:2018-10-17
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A Reverse Transcriptase-Cas1 Fusion Protein Contains a Cas6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition.
Mol. Cell, 72, 2018
6EXP
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CRYSTAL STRUCTURE OF THE SIRV3 ACRID1 (GP02) ANTI-CRISPR PROTEIN
Descriptor:SIRV3 AcrID1 (gp02) anti-CRISPR protein
Authors:He, F., Bhoobalan-Chitty, Y., Van, L.B., Kjeldsen, A.L., Dedola, M., Makarova, K.S., Koonin, E.V., Brodersen, D.E., Peng, X.
Deposit date:2017-11-08
Release date:2018-01-31
Last modified:2018-05-16
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity.
Nat Microbiol, 3, 2018
1W94
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CRYSTAL STRUCTURE OF MIL (MTH680), AN ARCHAEAL IMP4-LIKE PROTEIN
Descriptor:PROBABLE BRIX-DOMAIN RIBOSOMAL BIOGENESIS PROTEIN
Authors:Ng, C.L., Antson, A.A., Ortiz-Lombardia, M.
Deposit date:2004-10-06
Release date:2005-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Mil (Mth680): Internal Duplication and Similarity between the Imp4/Brix Domain and the Anticodon-Binding Domain of Class Iia Aminoacyl-tRNA Synthetases
Embo Rep., 6, 2005
2I8E
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STRUCTURE OF SSO1404, A PREDICTED DNA REPAIR-ASSOCIATED PROTEIN FROM SULFOLOBUS SOLFATARICUS P2
Descriptor:Hypothetical protein, IODIDE ION
Authors:Wang, S., Zimmerman, M.D., Kudritska, M., Chruszcz, M., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-09-01
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats.
J.Biol.Chem., 283, 2008
2WBM
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CRYSTAL STRUCTURE OF MTHSBDS, THE HOMOLOGUE OF THE SHWACHMAN-BODIAN- DIAMOND SYNDROME PROTEIN IN THE EURIARCHAEON METHANOTHERMOBACTER THERMAUTOTROPHICUS
Descriptor:RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG, GLYCEROL, SULFATE ION, ...
Authors:Ng, C.L., Isupov, M.N., Lebedev, A.A., Ortiz-Lombardia, M., Antson, A.A.
Deposit date:2009-03-02
Release date:2009-06-02
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Conformational Flexibility and Molecular Interactions of an Archaeal Homologue of the Shwachman-Bodian-Diamond Syndrome Protein.
Bmc Struct.Biol., 9, 2009
3E0J
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X-RAY STRUCTURE OF THE COMPLEX OF REGULATORY SUBUNITS OF HUMAN DNA POLYMERASE DELTA
Descriptor:DNA polymerase subunit delta-2, DNA polymerase subunit delta-3
Authors:Baranovskiy, A.G., Babayeva, N.D., Pavlov, Y.I., Vassylyev, D.G., Tahirov, T.H.
Deposit date:2008-07-31
Release date:2008-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:X-ray structure of the complex of regulatory subunits of human DNA polymerase delta.
Cell Cycle, 7, 2008
3NKD
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STRUCTURE OF CRISP-ASSOCIATED PROTEIN CAS1 FROM ESCHERICHIA COLI STR. K-12
Descriptor:CRISPR-associated protein Cas1
Authors:Nocek, B., Skarina, T., Beloglazova, N., Savchenko, A., Joachimiak, A., Yakunin, A.
Deposit date:2010-06-18
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair.
Mol.Microbiol., 79, 2011
3NKE
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HIGH RESOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN CRISP-ASSOCIATED PROTEIN CAS1 FROM ESCHERICHIA COLI STR. K-12
Descriptor:protein ygbT, 1,2-ETHANEDIOL, SULFITE ION, ...
Authors:Nocek, B., Skarina, T., Beloglazova, N., Savchenko, A., Joachimiak, A., Yakunin, A.
Deposit date:2010-06-18
Release date:2010-08-25
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair.
Mol.Microbiol., 79, 2011
3TEK
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THERMODBP: A NON-CANONICAL SINGLE-STRANDED DNA BINDING PROTEIN WITH A NOVEL STRUCTURE AND MECHANISM
Descriptor:ThermoDBP-single stranded DNA binding protein
Authors:White, M.F., Paytubi, S., Liu, H., Graham, S., McMahon, S.A., Naismith, J.H.
Deposit date:2011-08-15
Release date:2011-11-23
Last modified:2012-02-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales.
Proc.Natl.Acad.Sci.USA, 109, 2012
4BF9
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CRYSTAL STRUCTURE OF E. COLI DIHYDROURIDINE SYNTHASE C (DUSC) (SELENOMETHIONINE DERIVATIVE)
Descriptor:TRNA-DIHYDROURIDINE SYNTHASE C, FLAVIN MONONUCLEOTIDE
Authors:Byrne, R.T., Whelan, F., Konevega, A., Aziz, N., Rodnina, M., Antson, A.A.
Deposit date:2013-03-16
Release date:2013-11-06
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Major Reorientation of tRNA Substrates Defines Specificity of Dihydrouridine Synthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
4BFA
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CRYSTAL STRUCTURE OF E. COLI DIHYDROURIDINE SYNTHASE C (DUSC)
Descriptor:TRNA-DIHYDROURIDINE SYNTHASE C, FLAVIN MONONUCLEOTIDE, 1,2-ETHANEDIOL, ...
Authors:Byrne, R.T., Whelan, F., Konevega, A., Aziz, N., Rodnina, M., Antson, A.A.
Deposit date:2013-03-16
Release date:2013-11-06
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Major Reorientation of tRNA Substrates Defines Specificity of Dihydrouridine Synthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
4WYH
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CRYSTAL STRUCTURE OF PRIX FROM THE HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS SOLFATARICUS
Descriptor:Uncharacterized protein, IODIDE ION
Authors:Ouyang, S.
Deposit date:2014-11-17
Release date:2015-06-24
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A primase subunit essential for efficient primer synthesis by an archaeal eukaryotic-type primase.
Nat Commun, 6, 2015
5B43
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CRYSTAL STRUCTURE OF ACIDAMINOCOCCUS SP. CPF1 IN COMPLEX WITH CRRNA AND TARGET DNA
Descriptor:CRISPR-associated endonuclease Cpf1, RNA (43-MER), DNA (34-MER), ...
Authors:Yamano, T., Nishimasu, H., Hirano, H., Nakane, T., Ishitani, R., Nureki, O.
Deposit date:2016-03-30
Release date:2016-05-04
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA
Cell, 165, 2016
1H1J
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THE SAP DOMAIN IS A DNA-BINDING DOMAIN CAPABLE OF BINDING S/MAR DNA
Descriptor:THO1 PROTEIN
Authors:Jacobsen, J.O.B., Freund, S.M.V., Bycroft, M.
Deposit date:2002-07-16
Release date:2002-08-08
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:The Sap Domain is a DNA-Binding Domain Capable of Binding S/Mar DNA
To be Published
1IM4
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CRYSTAL STRUCTURE OF A DINB HOMOLOG (DBH) LESION BYPASS DNA POLYMERASE CATALYTIC FRAGMENT FROM SULFOLOBUS SOLFATARICUS
Descriptor:DBH, SULFATE ION
Authors:Pata, J.D., Zhou, B.L., Steitz, T.A.
Deposit date:2001-05-09
Release date:2001-09-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain.
Mol.Cell, 8, 2001
1QHK
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N-TERMINAL DOMAIN OF SACCHAROMYCES CEREVISIAE RNASE HI REVEALS A FOLD WITH A RESEMBLANCE TO THE N-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L9
Descriptor:PROTEIN (RIBONUCLEASE HI)
Authors:Evans, S.P., Bycroft, M.
Deposit date:1999-05-17
Release date:1999-08-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain of Saccharomyces cerevisiae RNase HI reveals a fold with a strong resemblance to the N-terminal domain of ribosomal protein L9.
J.Mol.Biol., 291, 1999