Author results

3VU8
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METIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH METHIONYL-ADENYLATE ANALOGUE
Descriptor:Methionine--tRNA ligase, ZINC ION, N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE
Authors:Konno, M., Kato-Murayama, M., Toma-Fukai, S., Uchikawa, E., Nureki, O., Yokoyama, S.
Deposit date:2012-06-22
Release date:2013-06-26
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The modeling of structures of specific conformation of homosysteine-AMP leading to thiolactone-formation on class Ia aminoacyl-tRNA synthetases
To be Published
1LOP
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CYCLOPHILIN A COMPLEXED WITH SUCCINYL-ALA-PRO-ALA-P-NITROANILIDE
Descriptor:CYCLOPHILIN A, SUCCINYL-ALA-PRO-ALA-P-NITROANILIDE
Authors:Konno, M.
Deposit date:1996-06-17
Release date:1996-12-23
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The substrate-binding site in Escherichia coli cyclophilin A preferably recognizes a cis-proline isomer or a highly distorted form of the trans isomer.
J.Mol.Biol., 256, 1996
1J2A
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STRUCTURE OF E. COLI CYCLOPHILIN B K163T MUTANT
Descriptor:cyclophilin B
Authors:Konno, M., Sano, Y., Okudaira, K., Kawaguchi, Y., Yamagishi-Ohmori, Y., Fushinobu, S., Matsuzawa, H.
Deposit date:2002-12-26
Release date:2004-02-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
1V9T
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STRUCTURE OF E. COLI CYCLOPHILIN B K163T MUTANT BOUND TO SUCCINYL-ALA-PRO-ALA-P-NITROANILIDE
Descriptor:cyclophilin B, (SIN)APA(NIT)
Authors:Konno, M., Sano, Y., Okudaira, K., Kawaguchi, Y., Yamagishi-Ohmori, Y., Fushinobu, S., Matsuzawa, H.
Deposit date:2004-02-03
Release date:2004-09-21
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
1VAI
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STRUCTURE OF E. COLI CYCLOPHILIN B K163T MUTANT BOUND TO N-ACETYL-ALA-ALA-PRO-ALA-7-AMINO-4-METHYLCOUMARIN
Descriptor:cyclophilin B, (ACE)AAPA(MCM)
Authors:Konno, M., Sano, Y., Okudaira, K., Kawaguchi, Y., Yamagishi-Ohmori, Y., Fushinobu, S., Matsuzawa, H.
Deposit date:2004-02-17
Release date:2004-09-21
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer
Eur.J.Biochem., 271, 2004
1VDN
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CRYSTAL STRUCTURE OF YEAST CYCLOPHILIN A COMPLEXED WITH ACE-ALA-ALA-PRO-ALA-7-AMINO-4-METHYLCOUMARIN
Descriptor:Cyclophilin A, (ACE)AAPA(MCM)
Authors:Konno, M., Shibano, T., Okudaira, K., Takahashi, N.
Deposit date:2004-03-24
Release date:2005-06-28
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure Of Yeast Cyclophilin A Complexed With ACE-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
to be published
1WOY
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CRYSTAL STRUCTURE OF METHIONYL TRNA SYNTHETASE Y225F MUTANT FROM THERMUS THERMOPHILUS
Descriptor:Methionyl-tRNA synthetase, ZINC ION
Authors:Konno, M., Takeda, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-27
Release date:2005-09-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of methionyl tRNA synthetase Y225F mutant from Thermus thermophilus
TO BE PUBLISHED
2D54
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CRYSTAL STRUCTURE OF METHIONYL TRNA SYNTHETASE Y225A MUTANT FROM THERMUS THERMOPHILUS
Descriptor:Methionyl-tRNA synthetase, ZINC ION
Authors:Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-28
Release date:2006-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Y225F/Amutation for Met-tRNA synthetase reveals importance of hydrophobic circumstance
To be Published
2D5B
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS METHIONYL TRNA SYNTHETASE Y225F MUTANT OBTAINED IN THE PRESENCE OF PEG6000
Descriptor:Methionyl-tRNA Synthetase, ZINC ION
Authors:Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-31
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Y225F/A Mutation for Met-tRNA synthetase reveals importance of hydrophobic circumstances
To be Published
2ZOC
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CRYSTAL STRUCTURE OF RECOMBINANT HUMAN ANNEXIN IV
Descriptor:Annexin A4, CALCIUM ION
Authors:Konno, M., Kaneko-Kanzaki, Y., Fushinobu-Okushi, N., Mochizuki, K., Uchikaw, E., Satoh, A., Aikawa, K.
Deposit date:2008-05-08
Release date:2009-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The comparison of the loop structure of membrane binding sites between human and bovine annexin IV
To be Published
2ZUE
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG) AND AN ATP ANALOG (ANP)
Descriptor:Arginyl-tRNA synthetase, tRNA-Arg, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Konno, M., Sumida, T., Uchikawa, E., Mori, Y., Yanagisawa, T., Sekine, S., Yokoyama, S.
Deposit date:2008-10-16
Release date:2009-08-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)
Febs J., 276, 2009
2ZUF
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG)
Descriptor:Arginyl-tRNA synthetase, tRNA-Arg
Authors:Konno, M., Sumida, T., Uchikawa, E., Mori, Y., Yanagisawa, T., Sekine, S., Yokoyama, S.
Deposit date:2008-10-16
Release date:2009-08-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)
Febs J., 276, 2009
1IST
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CRYSTAL STRUCTURE OF YEAST CYCLOPHILIN A, CPR1
Descriptor:Cyclophilin A
Authors:Konno, M., Kashima, A., Yoshikawa-Fujioka, S.
Deposit date:2001-12-25
Release date:2003-11-18
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Turns are Essential in the Folding of the Globular Beta-Barrel Structure of Yeast Cyclophilin A, CPR1
To be Published
1A8H
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METHIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Descriptor:METHIONYL-TRNA SYNTHETASE, ZINC ION
Authors:Sugiura, I., Nureki, O., Ugaji, Y., Kuwabara, S., Lober, B., Giege, R., Moras, D., Yokoyama, S., Konno, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-03-26
Release date:1999-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules.
Structure, 8, 2000
1BZA
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BETA-LACTAMASE TOHO-1 FROM ESCHERICHIA COLI TUH12191
Descriptor:BETA-LACTAMASE, SULFATE ION
Authors:Ibuka, A., Taguchi, A., Ishiguro, M., Fushinobu, S., Ishii, Y., Kamitori, S., Okuyama, K., Yamaguchi, K., Konno, M., Matsuzawa, H.
Deposit date:1998-10-28
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 A resolution.
J.Mol.Biol., 285, 1999
1ILE
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ISOLEUCYL-TRNA SYNTHETASE
Descriptor:ISOLEUCYL-TRNA SYNTHETASE, ZINC ION
Authors:Nureki, O., Vassylyev, D.G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Schimmel, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-02-24
Release date:1999-04-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Enzyme structure with two catalytic sites for double-sieve selection of substrate.
Science, 280, 1998
3X3B
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CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN ACIDIC STATE
Descriptor:Sodium pumping rhodopsin, RETINAL, OLEIC ACID, ...
Authors:Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
Deposit date:2015-01-18
Release date:2015-04-08
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
3X3C
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CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 IN NEUTRAL STATE
Descriptor:Sodium pumping rhodopsin, RETINAL, OLEIC ACID
Authors:Kato, H.E., Inoue, K., Abe-Yoshizumi, R., Kato, Y., Ono, H., Konno, M., Ishizuka, T., Hoque, M.R., Hososhima, S., Kunitomo, H., Ito, J., Yoshizawa, S., Yamashita, K., Takemoto, M., Nishizawa, T., Taniguchi, R., Kogure, K., Maturana, A.D., Iino, Y., Yawo, H., Ishitani, R., Kandori, H., Nureki, O.
Deposit date:2015-01-18
Release date:2015-04-08
Last modified:2015-05-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
1BK1
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ENDO-1,4-BETA-XYLANASE C
Descriptor:ENDO-1,4-B-XYLANASE C
Authors:Fushinobu, S., Ito, K., Konno, M., Wakagi, T., Matsuzawa, H.
Deposit date:1998-07-14
Release date:1999-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH.
Protein Eng., 11, 1998
1EZ4
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CRYSTAL STRUCTURE OF NON-ALLOSTERIC L-LACTATE DEHYDROGENASE FROM LACTOBACILLUS PENTOSUS AT 2.3 ANGSTROM RESOLUTION
Descriptor:LACTATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Uchikoba, H., Fushinobu, S., Wakagi, T., Konno, M., Taguchi, H., Matsuzawa, H.
Deposit date:2000-05-10
Release date:2001-12-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of non-allosteric L-lactate dehydrogenase from Lactobacillus pentosus at 2.3 A resolution: specific interactions at subunit interfaces.
Proteins, 46, 2002
1QQT
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METHIONYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI
Descriptor:METHIONYL-TRNA SYNTHETASE, ZINC ION
Authors:Mechulam, Y., Schmitt, E., Maveyraud, L., Zelwer, C., Nureki, O., Yokoyama, S., Konno, M., Blanquet, S.
Deposit date:1999-06-08
Release date:2000-01-01
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features.
J.Mol.Biol., 294, 1999
1C47
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BINDING DRIVEN STRUCTURAL CHANGES IN CRYSTALINE PHOSPHOGLUCOMUTASE ASSOCIATED WITH CHEMICAL REACTION
Descriptor:ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE PHOSPHOTRANSFERASE, ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE, CADMIUM ION
Authors:Baranidharan, S., Ray Jr., W.J.
Deposit date:1999-08-11
Release date:1999-08-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction
To be Published
1C4G
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PHOSPHOGLUCOMUTASE VANADATE BASED TRANSITION STATE ANALOG COMPLEX
Descriptor:PROTEIN (ALPHA-D-GLUCOSE 1-PHOSPHATE PHOSPHOGLUCOMUTASE), COBALT (II) ION, ALPHA-D-GLUCOSE-1-PHOSPHATE-6-VANADATE
Authors:Baranidharan, S., Ray Jr., W.J.
Deposit date:1999-08-24
Release date:1999-08-27
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Relationships at the Active Site of Phos in Analog Complexes
To be Published
1JDY
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RABBIT MUSCLE PHOSPHOGLUCOMUTASE
Descriptor:PHOSPHOGLUCOMUTASE, CADMIUM ION, SULFATE ION
Authors:Ray Junior, W.J., Baranidharan, S., Liu, Y.
Deposit date:1996-07-11
Release date:1997-03-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:
To be Published
1LXT
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STRUCTURE OF PHOSPHOTRANSFERASE PHOSPHOGLUCOMUTASE FROM RABBIT
Descriptor:PHOSPHOGLUCOMUTASE (DEPHOSPHO FORM), CADMIUM ION, SULFATE ION
Authors:Ray Junior, W.J., Baranidharan, S., Liu, Y.
Deposit date:1996-07-28
Release date:1997-02-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of rabbit muscle phosphoglucomutase refined at 2.4 A resolution.
Acta Crystallogr.,Sect.D, 53, 1997
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