Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5NYB
DownloadVisualize
BU of 5nyb by Molmil
A C145A mutant of Nesterenkonia AN1 amidase bound to adipamide
Descriptor: Amidase, adipamide
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NXZ
DownloadVisualize
BU of 5nxz by Molmil
A C145A mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
Descriptor: Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-05-30
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NYE
DownloadVisualize
BU of 5nye by Molmil
A C145A mutant of Nesterenkonia AN1 amidase bound to propionamide
Descriptor: Amidase, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NY2
DownloadVisualize
BU of 5ny2 by Molmil
A C145A mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
Descriptor: Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-06-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NZ5
DownloadVisualize
BU of 5nz5 by Molmil
A C145S mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
Descriptor: Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-12
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NYC
DownloadVisualize
BU of 5nyc by Molmil
A C145A mutant of Nesterenkonia AN1 amidase bound to propionitrile
Descriptor: Amidase, DI(HYDROXYETHYL)ETHER, propanenitrile
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NY7
DownloadVisualize
BU of 5ny7 by Molmil
A C145A mutant of Nesterenkonia AN1 amidase bound to nicotinamide
Descriptor: Amidase, CHLORIDE ION, NICOTINAMIDE
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
4IZT
DownloadVisualize
BU of 4izt by Molmil
The E41Q mutant of the amidase from Nesterenkonia sp. AN1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
Descriptor: 2-fluoroacetamide, ACETAMIDE, Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZU
DownloadVisualize
BU of 4izu by Molmil
The E41Q mutant of the amidase from Nesterenkonia sp. AN1 showing the result of Michael addition of acrylamide at the active site cysteine
Descriptor: Amidase, PROPIONAMIDE, prop-2-enamide
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZV
DownloadVisualize
BU of 4izv by Molmil
The E41Q/C145A double mutant of the amidase from Nesterenkonia sp. AN1 in complex with acrylamide
Descriptor: Amidase, PROPIONAMIDE, prop-2-enamide
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZW
DownloadVisualize
BU of 4izw by Molmil
The E41L mutant of the amidase from Nesterenkonia sp. AN1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
Descriptor: 2-fluoroacetamide, ACETAMIDE, Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZS
DownloadVisualize
BU of 4izs by Molmil
The C145A mutant of the amidase from Nesterenkonia sp. AN1 in complex with butyramide
Descriptor: Amidase, BUTYRAMIDE, DI(HYDROXYETHYL)ETHER
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
2PLQ
DownloadVisualize
BU of 2plq by Molmil
Crystal structure of the amidase from geobacillus pallidus RAPc8
Descriptor: Aliphatic amidase
Authors:Kimani, S.W, Sewell, B.T, Agarkar, V.B, Sayed, M.F, Cowan, D.A.
Deposit date:2007-04-20
Release date:2007-05-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The quaternary structure of the amidase from Geobacillus pallidus RAPc8 is revealed by its crystal packing.
Acta Crystallogr.,Sect.F, 62, 2006
5JQN
DownloadVisualize
BU of 5jqn by Molmil
NitN Amidase from Neterenkonia sp. AN1 after thrombin His-tag removal.
Descriptor: Aliphatic amidase
Authors:Sewell, B.T, Kimani, S.W, Weber, B.W.
Deposit date:2016-05-05
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:QM/MM Modelling of Substrate Binding in the Amidase Active Site
To Be Published
4KZF
DownloadVisualize
BU of 4kzf by Molmil
The mechanism of the amidases: The effect of the mutation E142L in the amidase from Geobacillus pallidus
Descriptor: Aliphatic amidase, CHLORIDE ION
Authors:Weber, B.W, Sewell, B.T, Kimani, S.W, Varsani, A, Cowan, D.A, Hunter, R.
Deposit date:2013-05-29
Release date:2013-08-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
J.Biol.Chem., 288, 2013
4LF0
DownloadVisualize
BU of 4lf0 by Molmil
The E142D mutant of the amidase from Geobacillus pallidus
Descriptor: Aliphatic amidase
Authors:Sewell, B.T, Weber, B.W, Kimani, S.W, Cowan, D.A, Hunter, R, Venter, G.A, Gumbart, J.C, Thuku, R.N, Varsani, A.
Deposit date:2013-06-26
Release date:2013-08-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
J.Biol.Chem., 288, 2013
4GYN
DownloadVisualize
BU of 4gyn by Molmil
The E142L mutant of the amidase from Geobacillus pallidus
Descriptor: Aliphatic amidase, CHLORIDE ION
Authors:Weber, B.W, Sewell, B.T, Kimani, S.W, Varsani, A, Cowan, D.A, Hunter, R.
Deposit date:2012-09-05
Release date:2013-08-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
J.Biol.Chem., 288, 2013
4GYL
DownloadVisualize
BU of 4gyl by Molmil
The E142L mutant of the amidase from Geobacillus pallidus showing the result of Michael addition of acrylamide at the active site cysteine
Descriptor: Aliphatic amidase, CHLORIDE ION, PROPIONAMIDE
Authors:Weber, B.W, Sewell, B.T, Kimani, S.W, Varsani, A, Cowan, D.A, Hunter, R.
Deposit date:2012-09-05
Release date:2013-08-21
Last modified:2014-02-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
J.Biol.Chem., 288, 2013
7SSE
DownloadVisualize
BU of 7sse by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with CYCA-117-70
Descriptor: DDB1- and CUL4-associated factor 1, N-[(3R)-1-(3-fluorophenyl)piperidin-3-yl]-6-(morpholin-4-yl)pyrimidin-4-amine
Authors:Kimani, S, Owen, J, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Shahani, V.M, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2021-11-10
Release date:2021-12-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets.
J.Chem.Inf.Model., 63, 2023
8GCY
DownloadVisualize
BU of 8gcy by Molmil
Co-crystal structure of CBL-B in complex with N-Aryl isoindolin-1-one inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-{3-[(1s,3R)-3-methyl-1-(4-methyl-4H-1,2,4-triazol-3-yl)cyclobutyl]phenyl}-6-{[(3S)-3-methylpiperidin-1-yl]methyl}-4-(trifluoromethyl)-2,3-dihydro-1H-isoindol-1-one, E3 ubiquitin-protein ligase CBL-B, ...
Authors:Kimani, S, Zeng, H, Dong, A, Li, Y, Santhakumar, V, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2023-03-03
Release date:2023-03-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:The co-crystal structure of Cbl-b and a small-molecule inhibitor reveals the mechanism of Cbl-b inhibition.
Commun Biol, 6, 2023
7UFV
DownloadVisualize
BU of 7ufv by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with OICR-6766
Descriptor: (3P)-N-[(1S)-3-amino-1-(3-chlorophenyl)-3-oxopropyl]-3-(2-fluorophenyl)-1H-pyrazole-4-carboxamide, DDB1- and CUL4-associated factor 1, UNKNOWN ATOM OR ION
Authors:Kimani, S, Li, A, Li, Y, Dong, A, Hutchinson, A, Seitova, A, Wilson, B, Al-Awar, R, Vedadi, M, Brown, P, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2022-03-23
Release date:2022-05-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of Nanomolar DCAF1 Small Molecule Ligands.
J.Med.Chem., 66, 2023

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon