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6A6M
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CRYSTAL STRUCTURE OF AN OUTWARD-OPEN NUCLEOTIDE-BOUND STATE OF THE EUKARYOTIC ABC MULTIDRUG TRANSPORTER CMABCB1
Descriptor:ATP-binding cassette, sub-family B, member 1, ...
Authors:Kato, H., Nakatsu, T., Kodan, A.
Deposit date:2018-06-28
Release date:2019-02-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Inward- and outward-facing X-ray crystal structures of homodimeric P-glycoprotein CmABCB1.
Nat Commun, 10, 2019
6A6N
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CRYSTAL STRUCTURE OF AN INWARD-OPEN APO STATE OF THE EUKARYOTIC ABC MULTIDRUG TRANSPORTER CMABCB1
Descriptor:ATP-binding cassette, sub-family B, member 1, ...
Authors:Kato, H., Nakatsu, T., Kodan, A.
Deposit date:2018-06-28
Release date:2019-01-16
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Inward- and outward-facing X-ray crystal structures of homodimeric P-glycoprotein CmABCB1.
Nat Commun, 10, 2019
2GLT
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STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0.
Descriptor:GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K., Yamaguchi, H., Kato, H., Nishioka, T., Katsube, Y., Oda, J.
Deposit date:1995-05-16
Release date:1995-07-31
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
1GSH
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STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5
Descriptor:GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K., Kato, H., Yamaguchi, H., Nishioka, T., Katsube, Y., Oda, J.
Deposit date:1995-05-16
Release date:1996-07-11
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
1GSA
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STRUCTURE OF GLUTATHIONE SYNTHETASE COMPLEXED WITH ADP AND GLUTATHIONE
Descriptor:GLUTATHIONE SYNTHETASE, MAGNESIUM ION, SULFATE ION, ...
Authors:Hara, T., Kato, H., Nishioka, T., Katsube, Y., Oda, J.
Deposit date:1995-06-08
Release date:1996-06-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A pseudo-michaelis quaternary complex in the reverse reaction of a ligase: structure of Escherichia coli B glutathione synthetase complexed with ADP, glutathione, and sulfate at 2.0 A resolution.
Biochemistry, 35, 1996
1GLV
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THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE SYNTHETASE FROM ESCHERICHIA COLI B AT 2.0 ANGSTROMS RESOLUTION
Descriptor:GLUTATHIONE SYNTHASE
Authors:Yamaguchi, H., Kato, H., Tanaka, T., Katsube, Y.
Deposit date:1993-03-12
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 A resolution.
J.Mol.Biol., 229, 1993
1IS1
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CRYSTAL STRUCTURE OF RIBOSOME RECYCLING FACTOR FROM VIBRIO PARAHAEMOLYTICUS
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Nakano, H., Yamaichi, Y., Uchiyama, S., Yoshida, T., Nishina, K., Kato, H., Ohkubo, T., Honda, T., Yamagata, Y., Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
5XFE
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LUCIFERIN-REGENERATING ENZYME SOLVED BY SAD USING XFEL (REFINED AGAINST 11,000 PATTERNS)
Descriptor:Luciferin regenerating enzyme, MERCURY (II) ION, MAGNESIUM ION, ...
Authors:Yamashita, K., Pan, D., Okuda, T., Murai, T., Kodan, A., Yamaguchi, T., Gomi, K., Kajiyama, N., Kato, H., Ago, H., Yamamoto, M., Nakatsu, T.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
1IPE
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TROPINONE REDUCTASE-II COMPLEXED WITH NADPH
Descriptor:TROPINONE REDUCTASE-II, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yamashita, A., Endo, M., Higashi, T., Nakatsu, T., Yamada, Y., Oda, J., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-05-09
Release date:2003-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1IPF
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TROPINONE REDUCTASE-II COMPLEXED WITH NADPH AND TROPINONE
Descriptor:TROPINONE REDUCTASE-II, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE
Authors:Yamashita, A., Endo, M., Higashi, T., Nakatsu, T., Yamada, Y., Oda, J., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-05-09
Release date:2003-06-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
11AS
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ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE
Descriptor:ASPARAGINE SYNTHETASE, ASPARAGINE
Authors:Nakatsu, T., Kato, H., Oda, J.
Deposit date:1997-12-02
Release date:1998-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase.
Nat.Struct.Biol., 5, 1998
12AS
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ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE AND AMP
Descriptor:ASPARAGINE SYNTHETASE, ASPARAGINE, ADENOSINE MONOPHOSPHATE
Authors:Nakatsu, T., Kato, H., Oda, J.
Deposit date:1997-12-02
Release date:1998-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase.
Nat.Struct.Biol., 5, 1998
1K5C
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ENDOPOLYGALACTURONASE I FROM STEREUM PURPUREUM AT 0.96 A RESOLUTION
Descriptor:ENDOPOLYGALACTURONASE, N-ACETYL-D-GLUCOSAMINE, CHLORIDE ION, ...
Authors:Shimizu, T., Nakatsu, T., Miyairi, K., Okuno, T., Kato, H.
Deposit date:2001-10-10
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
1KCC
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ENDOPOLYGALACTURONASE I FROM STEREUM PURPUREUM COMPLEXED WITH A GALACTURONATE AT 1.00 A RESOLUTION.
Descriptor:ENDOPOLYGALACTURONASE, Beta-D-Galactopyranuronic acid, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Shimizu, T., Nakatsu, T., Miyairi, K., Okuno, T., Kato, H.
Deposit date:2001-11-08
Release date:2002-06-05
Last modified:2015-10-14
Method:X-RAY DIFFRACTION (1 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
1KCD
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ENDOPOLYGALACTURONASE I FROM STEREUM PURPUREUM COMPLEXED WITH TWO GALACTURONATE AT 1.15 A RESOLUTION.
Descriptor:ENDOPOLYGALACTURONASE, beta-D-galactofuranuronic acid, Beta-D-Galactopyranuronic acid, ...
Authors:Shimizu, T., Nakatsu, T., Miyairi, K., Okuno, T., Kato, H.
Deposit date:2001-11-08
Release date:2002-06-05
Last modified:2015-10-14
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
1AUN
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PATHOGENESIS-RELATED PROTEIN 5D FROM NICOTIANA TABACUM
Descriptor:PR-5D
Authors:Koiwa, H., Kato, H., Nakatsu, T., Oda, J., Yamada, Y., Sato, F.
Deposit date:1997-08-29
Release date:1998-03-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of tobacco PR-5d protein at 1.8 A resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins.
J.Mol.Biol., 286, 1999
1V4G
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE FROM ESCHERICHIA COLI B
Descriptor:Glutamate--cysteine ligase
Authors:Hibi, T., Nii, H., Nakatsu, T., Kato, H., Hiratake, J., Oda, J.
Deposit date:2003-11-13
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
1VA6
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE FROM ESCHERICHIA COLI B COMPLEXED WITH TRANSITION-STATE ANALOGUE
Descriptor:Glutamate--cysteine ligase, MAGNESIUM ION, (2S)-2-AMINO-4-[[(2R)-2-CARBOXYBUTYL](PHOSPHONO)SULFONIMIDOYL]BUTANOIC ACID, ...
Authors:Hibi, T., Nii, H., Nakatsu, T., Kato, H., Hiratake, J., Oda, J.
Deposit date:2004-02-12
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
1V2B
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CRYSTAL STRUCTURE OF PSBP PROTEIN IN THE OXYGEN-EVOLVING COMPLEX OF PHOTOSYSTEM II FROM HIGHER PLANTS
Descriptor:23-kDa polypeptide of photosystem II oxygen-evolving complex, ALPHA-D-GLUCOSE, SULFATE ION
Authors:Ifuku, K., Nakatsu, T., Kato, H., Sato, F., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-14
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum
Embo Rep., 5, 2004
1VBG
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PYRUVATE PHOSPHATE DIKINASE FROM MAIZE
Descriptor:pyruvate,orthophosphate dikinase, MAGNESIUM ION, SULFATE ION
Authors:Nakanishi, T., Nakatsu, T., Matsuoka, M., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1VBH
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PYRUVATE PHOSPHATE DIKINASE WITH BOUND MG-PEP FROM MAIZE
Descriptor:pyruvate,orthophosphate dikinase, MAGNESIUM ION, SULFATE ION, ...
Authors:Nakanishi, T., Nakatsu, T., Matsuoka, M., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
2AE2
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TROPINONE REDUCTASE-II COMPLEXED WITH NADP+ AND PSEUDOTROPINE
Descriptor:PROTEIN (TROPINONE REDUCTASE-II), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PSEUDOTROPINE
Authors:Yamashita, A., Kato, H., Wakatsuki, S., Tomizaki, T., Nakatsu, T., Nakajima, K., Hashimoto, T., Yamada, Y., Oda, J.
Deposit date:1999-01-26
Release date:1999-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of tropinone reductase-II complexed with NADP+ and pseudotropine at 1.9 A resolution: implication for stereospecific substrate binding and catalysis.
Biochemistry, 38, 1999
1IWQ
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CRYSTAL STRUCTURE OF MARCKS CALMODULIN BINDING DOMAIN PEPTIDE COMPLEXED WITH CA2+/CALMODULIN
Descriptor:CALMODULIN, MARCKS, CALCIUM ION
Authors:Yamauchi, E., Nakatsu, T., Matsubara, M., Kato, H., Taniguchi, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-31
Release date:2003-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a MARCKS peptide containing the calmodulin-binding domain in complex with Ca(2+)-calmodulin
NAT.STRUCT.BIOL., 10, 2003
1L7Z
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CRYSTAL STRUCTURE OF CA2+/CALMODULIN COMPLEXED WITH MYRISTOYLATED CAP-23/NAP-22 PEPTIDE
Descriptor:CALMODULIN, CAP-23/NAP-22, CALCIUM ION, ...
Authors:Matsubara, M., Nakatsu, T., Yamauchi, E., Kato, H., Taniguchi, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-18
Release date:2003-09-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a myristoylated CAP-23/NAP-22 N-terminal domain complexed with Ca2+/calmodulin
EMBO J., 23, 2004
2ZZO
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CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN GP41 FRAGMENT N36 AND FUSION INHIBITOR C34/S138A
Descriptor:Transmembrane protein
Authors:Watabe, T., Nakano, H., Nakatsu, T., Kato, H., Fujii, N.
Deposit date:2009-02-20
Release date:2009-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic study of an HIV-1 fusion inhibitor with the gp41 S138A substitution
J.Mol.Biol., 392, 2009