Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2XA7
DownloadVisualize
BU of 2xa7 by Molmil
AP2 clathrin adaptor core in active complex with cargo peptides
Descriptor: ADAPTOR-RELATED PROTEIN COMPLEX 2, ALPHA 2 SUBUNIT, AP-2 COMPLEX SUBUNIT BETA, ...
Authors:Jackson, L.P, Kelly, B.T, McCoy, A.J, Evans, P.R, Owen, D.J.
Deposit date:2010-03-29
Release date:2010-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A Large Scale Conformational Change Couples Membrane Recruitment to Cargo Binding in the Ap2 Clathrin Adaptor Complex
Cell(Cambridge,Mass.), 141, 2010
2YNO
DownloadVisualize
BU of 2yno by Molmil
yeast betaprime COP 1-304H6
Descriptor: COATOMER SUBUNIT BETA', POLY ALA
Authors:Jackson, L.P, Lewis, M, Kent, H.M, Edeling, M.A, Evans, P.R, Duden, R, Owen, D.J.
Deposit date:2012-10-17
Release date:2012-12-12
Last modified:2012-12-26
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Basis for Recognition of Dilysine Trafficking Motifs by Copi.
Dev.Cell, 23, 2012
2YNP
DownloadVisualize
BU of 2ynp by Molmil
yeast betaprime COP 1-604 with KTKTN motif
Descriptor: COATOMER SUBUNIT BETA', KTKTN MOTIF
Authors:Jackson, L.P, Lewis, M, Kent, H.M, Edeling, M.A, Evans, P.R, Duden, R, Owen, D.J.
Deposit date:2012-10-17
Release date:2012-12-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.962 Å)
Cite:Molecular Basis for Recognition of Dilysine Trafficking Motifs by Copi.
Dev.Cell, 23, 2012
2YNN
DownloadVisualize
BU of 2ynn by Molmil
yeast betaprime COP 1-304 with KTKTN motif
Descriptor: COATOMER SUBUNIT BETA', KTKTN MOTIF, SULFATE ION
Authors:Jackson, L.P, Lewis, M, Kent, H.M, Edeling, M.A, Evans, P.R, Duden, R, Owen, D.J.
Deposit date:2012-10-17
Release date:2012-12-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.782 Å)
Cite:Molecular Basis for Recognition of Dilysine Trafficking Motifs by Copi.
Dev.Cell, 23, 2012
7JTZ
DownloadVisualize
BU of 7jtz by Molmil
Yeast Glo3 GAP domain
Descriptor: ADP-ribosylation factor GTPase-activating protein GLO3, GLYCEROL, ZINC ION
Authors:Xie, B, Jackson, L.P.
Deposit date:2020-08-18
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The Glo3 GAP crystal structure supports the molecular niche model for ArfGAPs in COPI coats.
Adv Biol Regul, 79, 2021
7U6F
DownloadVisualize
BU of 7u6f by Molmil
Mouse retromer (VPS26/VPS35/VPS29) heterotrimers
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, SULFATE ION, ...
Authors:Kendall, A.K, Chandra, M, Jackson, L.P.
Deposit date:2022-03-04
Release date:2022-10-12
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Improved mammalian retromer cryo-EM structures reveal a new assembly interface.
J.Biol.Chem., 298, 2022
6VAB
DownloadVisualize
BU of 6vab by Molmil
Mouse retromer sub-structure: VPS35/VPS35 flat dimer
Descriptor: Vacuolar protein sorting-associated protein 29, Vacuolar protein sorting-associated protein 35
Authors:Kendall, A.K, Jackson, L.P.
Deposit date:2019-12-17
Release date:2020-02-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Mammalian Retromer Is an Adaptable Scaffold for Cargo Sorting from Endosomes.
Structure, 28, 2020
6VAC
DownloadVisualize
BU of 6vac by Molmil
Mouse retromer (VPS26/VPS35/VPS29) heterotrimer
Descriptor: Vacuolar protein sorting-associated protein 26A, Vacuolar protein sorting-associated protein 29, Vacuolar protein sorting-associated protein 35
Authors:Kendall, A.K, Jackson, L.P.
Deposit date:2019-12-17
Release date:2020-02-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Mammalian Retromer Is an Adaptable Scaffold for Cargo Sorting from Endosomes.
Structure, 28, 2020
6XJ1
DownloadVisualize
BU of 6xj1 by Molmil
Crystal Structure of CDC15 F-BAR Domain from Schizosaccharomyces pombe
Descriptor: Cell division control protein 15
Authors:Chandra, M, Jackson, L.P, Snider, C.E, Gould, K.L.
Deposit date:2020-06-22
Release date:2020-12-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Opposite Surfaces of the Cdc15 F-BAR Domain Create a Membrane Platform That Coordinates Cytoskeletal and Signaling Components for Cytokinesis.
Cell Rep, 33, 2020
5WF1
DownloadVisualize
BU of 5wf1 by Molmil
Tepsin VHS/ENTHlike domain SeMet
Descriptor: Uncharacterized protein
Authors:Frazier, M.N, Monken, A.E, Jackson, L.P.
Deposit date:2017-07-11
Release date:2017-07-26
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.954 Å)
Cite:Structure and evolution of ENTH and VHS/ENTH-like domains in tepsin.
Traffic, 18, 2017
5WF9
DownloadVisualize
BU of 5wf9 by Molmil
Tepsin tENTH domain 1-153
Descriptor: AP-4 complex accessory subunit Tepsin
Authors:Archuleta, T.L, Jackson, L.P.
Deposit date:2017-07-11
Release date:2017-08-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and evolution of ENTH and VHS/ENTH-like domains in tepsin.
Traffic, 18, 2017
5WFB
DownloadVisualize
BU of 5wfb by Molmil
Tepsin tENTH domain 1-136.
Descriptor: AP-4 complex accessory subunit Tepsin
Authors:Archuleta, T.L, Jackson, L.P.
Deposit date:2017-07-11
Release date:2017-07-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.382 Å)
Cite:Structure and evolution of ENTH and VHS/ENTH-like domains in tepsin.
Traffic, 18, 2017
5WF2
DownloadVisualize
BU of 5wf2 by Molmil
Tepsin VHS/ENTH-like Native
Descriptor: Uncharacterized protein
Authors:Frazier, M.N, Monken, A.E, Jackson, L.P.
Deposit date:2017-07-11
Release date:2017-07-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Structure and evolution of ENTH and VHS/ENTH-like domains in tepsin.
Traffic, 18, 2017
6TL0
DownloadVisualize
BU of 6tl0 by Molmil
Solution structure and 1H, 13C and 15N chemical shift assignments for the complex of VPS29 with VARP 687-747
Descriptor: Ankyrin repeat domain-containing protein 27, Vacuolar protein sorting-associated protein 29, ZINC ION
Authors:Owen, D.J, Neuhaus, D, Yang, J.-C, Crawley-Snowdon, H.
Deposit date:2019-11-29
Release date:2020-10-21
Method:SOLUTION NMR
Cite:Mechanism and evolution of the Zn-fingernail required for interaction of VARP with VPS29.
Nat Commun, 11, 2020
4CYM
DownloadVisualize
BU of 4cym by Molmil
Complex of human VARP-ANKRD1 with Rab32-GppCp
Descriptor: ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
Authors:Perez-Dorado, I, Schaefer, I.B, McCoy, A.J, Owen, D.J, Evans, P.R.
Deposit date:2014-04-13
Release date:2014-06-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Varp is Recruited on to Endosomes by Direct Interaction with Retromer, Where Together They Function in Export to the Cell Surface.
Dev.Cell, 29, 2014
4CZ2
DownloadVisualize
BU of 4cz2 by Molmil
Complex of human VARP-ANKRD1 with Rab32-GppCp. Selenomet derivative.
Descriptor: ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
Authors:Perez-Dorado, I, Schaefer, I.B, McCoy, A.J, Owen, D.J, Evans, P.R.
Deposit date:2014-04-16
Release date:2014-06-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Varp is Recruited on to Endosomes by Direct Interaction with Retromer, Where Together They Function in Export to the Cell Surface.
Dev.Cell, 29, 2014
6XS7
DownloadVisualize
BU of 6xs7 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D2
Descriptor: 48V-DTY-THR-THR-ILE-TYR-TRP-THR-PRO-LEU-GLY-THR-PHE-PRO-ARG-ILE-ARG, FORMIC ACID, GLYCEROL, ...
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XSA
DownloadVisualize
BU of 6xsa by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L2
Descriptor: 48V-TYR-LEU-PRO-THR-ILE-THR-GLY-VAL-GLY-HIS-LEU-TRP-HIS-PRO-LEU, SULFATE ION, Vacuolar protein sorting-associated protein 29
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS5
DownloadVisualize
BU of 6xs5 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1
Descriptor: 48V-DTY-ILE-ILE-ASP-THR-PRO-LEU-GLY-VAL-PHE-LEU-SER-SER-LEU-LYS-ARG, FORMIC ACID, GLYCEROL, ...
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS9
DownloadVisualize
BU of 6xs9 by Molmil
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L1
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 48V-TYR-ILE-LYS-THR-PRO-LEU-GLY-THR-PHE-PRO-ASN-ARG-HIS-GLY, GLYCEROL, ...
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021
6XS8
DownloadVisualize
BU of 6xs8 by Molmil
Crystal structure of Chaetomium thermophilum Vps29 complexed with RaPID-derived cyclic peptide RT-D3
Descriptor: 48V-DTY-GLY-TYR-ASP-PRO-LEU-GLY-LEU-LYS-TYR-PHE-ALA, Vacuolar protein sorting-associated protein 29
Authors:Chen, K.-E, Guo, Q, Collins, B.M.
Deposit date:2020-07-15
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95009851 Å)
Cite:De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.
Sci Adv, 7, 2021

217157

PDB entries from 2024-03-13

PDB statisticsPDBj update infoContact PDBjnumon