Author results

1Q6C
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CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE COMPLEXED WITH MALTOSE
Descriptor:beta-amylase, ALPHA-D-GLUCOSE, SULFATE ION
Authors:Hirata, A., Adachi, M., Sekine, A., Kang, Y.N., Utsumi, S., Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6D
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CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE MUTANT (M51T) WITH INCREASED PH OPTIMUM
Descriptor:beta-amylase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Hirata, A., Adachi, M., Sekine, A., Kang, Y.N., Utsumi, S., Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6E
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CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE MUTANT (E178Y) WITH INCREASED PH OPTIMUM AT PH 5.4
Descriptor:beta-amylase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Hirata, A., Adachi, M., Sekine, A., Kang, Y.N., Utsumi, S., Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6F
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CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE MUTANT (E178Y) WITH INCREASED PH OPTIMUM AT PH 7.1
Descriptor:beta-amylase, BETA-D-GLUCOSE, ALPHA-D-GLUCOSE, ...
Authors:Hirata, A., Adachi, M., Sekine, A., Kang, Y.N., Utsumi, S., Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6G
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CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE MUTANT (N340T) WITH INCREASED PH OPTIMUM
Descriptor:beta-amylase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Hirata, A., Adachi, M., Sekine, A., Kang, Y.N., Utsumi, S., Mikami, B.
Deposit date:2003-08-13
Release date:2004-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
4FZ2
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CRYSTAL STRUCTURE OF THE FOURTH TYPE OF ARCHAEAL TRNA SPLICING ENDONUCLEASE FROM CANDIDATUS MICRARCHAEUM ACIDIPHILUM ARMAN-2
Descriptor:tRNA intron endonuclease
Authors:Hirata, A., Fujishima, K., Yamagami, R., Kawamura, T., Banfiled, J.F., Kanai, A., Hori, H.
Deposit date:2012-07-06
Release date:2012-09-12
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (2.252 Å)
Cite:X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity
Nucleic Acids Res., 40, 2012
5E71
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CRYSTAL STRUCTURE OF THE ARCHAEAL TRNA M2G/M22G10 METHYLTRANSFERASE (ATRM11) FROM THERMOCOCCUS KODAKARENSIS
Descriptor:N2, N2-dimethylguanosine tRNA methyltransferase
Authors:Hirata, A.
Deposit date:2015-10-11
Release date:2016-07-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules.
Nucleic Acids Res., 2016
5E72
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CRYSTAL STRUCTURE OF THE ARCHAEAL TRNA M2G/M22G10 METHYLTRANSFERASE (ATRM11) IN COMPLEX WITH S-ADENOSYL-L-METHIONINE (SAM) FROM THERMOCOCCUS KODAKARENSIS
Descriptor:N2, N2-dimethylguanosine tRNA methyltransferase, S-ADENOSYLMETHIONINE
Authors:Hirata, A.
Deposit date:2015-10-11
Release date:2016-07-06
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules.
Nucleic Acids Res., 2016
1VEM
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CRYSTAL STRUCTURE ANALYSIS OF BACILLUS CEREUS BETA-AMYLASE AT THE OPTIMUM PH (6.5)
Descriptor:Beta-amylase, ALPHA-D-GLUCOSE, CALCIUM ION
Authors:Hirata, A., Adachi, M., Utsumi, S., Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEN
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CRYSTAL STRUCTURE ANALYSIS OF Y164E/MALTOSE OF BACILUS CEREUS BETA-AMYLASE AT PH 4.6
Descriptor:Beta-amylase, ALPHA-D-GLUCOSE, CALCIUM ION
Authors:Hirata, A., Adachi, M., Utsumi, S., Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEO
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CRYSTAL STRUCTURE ANALYSIS OF Y164F/MALTOSE OF BACILLUS CEREUS BETA-AMYLASE AT PH 4.6
Descriptor:Beta-amylase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Hirata, A., Adachi, M., Utsumi, S., Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEP
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CRYSTAL STRUCTURE ANALYSIS OF TRIPLE (T47M/Y164E/T328N)/MALTOSE OF BACILLUS CEREUS BETA-AMYLASE AT PH 6.5
Descriptor:Beta-amylase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Hirata, A., Adachi, M., Utsumi, S., Mikami, B.
Deposit date:2004-04-03
Release date:2005-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
2PA8
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X-RAY CRYSTAL STRUCTURE OF THE D/L SUBCOMPLEX OF THE SULFOLOBUS SOLFATARICUS RNA POLYMERASE
Descriptor:DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, SULFATE ION, ...
Authors:Hirata, A., Murakami, K.S.
Deposit date:2007-03-27
Release date:2008-02-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:The X-ray crystal structure of RNA polymerase from Archaea.
Nature, 451, 2008
3P1Y
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CRYSTAL STRUCTURE OF THE CHIMERIC ARCHAEOGLOBUS FULGIDUS RNA SPLICING ENDONUCLEASE WITH THE BROADEST SUBSTRATE SPECIFICITY
Descriptor:tRNA-splicing endonuclease
Authors:Hirata, A.
Deposit date:2010-10-01
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res., 39, 2011
3P1Z
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CRYSTAL STRUCTURE OF THE APEROPYRUM PERNIX RNA SPLICING ENDONUCLEASE
Descriptor:Putative uncharacterized protein, tRNA-splicing endonuclease
Authors:Hirata, A.
Deposit date:2010-10-01
Release date:2011-08-10
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res., 39, 2011
6JP6
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THE X-RAY STRUCTURE OF YEAST TRNA METHYLTRANSFERASE COMPLEX OF TRM7 AND TRM734 ESSENTIAL FOR 2'-O-METHYLATION AT THE FIRST POSITION OF ANTICODON IN SPECIFIC TRNAS
Descriptor:tRNA (guanosine(34)-2'-O)-methyltransferase non-catalytic subunit TRM734, tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase, SULFATE ION, ...
Authors:Hirata, A., Okada, K., Yoshii, K., Shiraisi, H., Saijo, S., Yonezawa, K., Sihimzu, N., Hori, H.
Deposit date:2019-03-26
Release date:2019-10-02
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (2.699 Å)
Cite:Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
Nucleic Acids Res., 47, 2019
6JPL
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THE X-RAY STRUCTURE OF YEAST TRNA METHYLTRANSFERASE TRM7-TRM734 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE
Descriptor:tRNA (guanosine(34)-2'-O)-methyltransferase non-catalytic subunit TRM734, tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Hirata, A., Okada, K., Yoshii, K., Shiraisi, H., Saijo, S., Yonezawa, K., Shimizu, N., Hori, H.
Deposit date:2019-03-27
Release date:2019-10-02
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
Nucleic Acids Res., 47, 2019
4QJV
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THE X-RAY CRYSTAL STRUCTURE OF RPO3/RPO11 HETERODIMER OF EURYARCHAEAL RNA POLYMERASE FROM THERMOCOCCUS KODAKARENSIS
Descriptor:DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION
Authors:Hirata, A., Murakami, K.S.
Deposit date:2014-06-05
Release date:2014-10-08
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration
Nat Commun, 5, 2014
1CQY
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STARCH BINDING DOMAIN OF BACILLUS CEREUS BETA-AMYLASE
Descriptor:BETA-AMYLASE
Authors:Yoon, H.J., Hirata, A., Adachi, M., Sekine, A., Utsumi, S., Mikami, B.
Deposit date:1999-08-12
Release date:1999-08-20
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of Separated Starch-Binding Domain of Bacillus cereus B-amylase
To be Published
5X5I
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THE X-RAY CRYSTAL STRUCTURE OF A TETR FAMILY TRANSCRIPTION REGULATOR RCDA INVOLVED IN THE REGULATION OF BIOFILM FORMATION IN ESCHERICHIA COLI
Descriptor:HTH-type transcriptional regulator RcdA
Authors:Sugino, H., Usui, M., Shimada, T., Nakano, M., Ogasawara, H., Ishihama, A., Hirata, A.
Deposit date:2017-02-16
Release date:2017-12-27
Method:X-RAY DIFFRACTION (2.554 Å)
Cite:A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation.
FEBS Lett., 591, 2017
5X89
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THE X-RAY CRYSTAL STRUCTURE OF SUBUNIT FUSION RNA SPLICING ENDONUCLEASE FROM METHANOPYRUS KANDLERI
Descriptor:EndA-like protein,tRNA-splicing endonuclease, PHOSPHATE ION
Authors:Kaneta, A., Fujishima, K., Morikazu, W., Hori, H., Hirata, A.
Deposit date:2017-03-01
Release date:2018-01-24
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:The RNA-splicing endonuclease from the euryarchaeaon Methanopyrus kandleri is a heterotetramer with constrained substrate specificity
Nucleic Acids Res., 46, 2018
3W5A
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CRYSTAL STRUCTURE OF THE CALCIUM PUMP AND SARCOLIPIN FROM RABBIT FAST TWITCH SKELETAL MUSCLE IN THE E1.MG2+ STATE
Descriptor:SERCA1a, Sarcolipin, 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), ...
Authors:Toyoshima, C., Iwasawa, S., Ogawa, H., Hirata, A., Tsueda, J., Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5B
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CRYSTAL STRUCTURE OF THE RECOMBINANT SERCA1A (CALCIUM PUMP OF FAST TWITCH SKELETAL MUSCLE) IN THE E1.MG2+ STATE
Descriptor:SERCA1a, SODIUM ION, MAGNESIUM ION, ...
Authors:Toyoshima, C., Iwasawa, S., Ogawa, H., Hirata, A., Tsueda, J., Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5C
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CRYSTAL STRUCTURE OF THE CALCIUM PUMP IN THE E2 STATE FREE FROM EXOGENOUS INHIBITORS
Descriptor:SERCA1a, SODIUM ION, PHOSPHATIDYLETHANOLAMINE
Authors:Toyoshima, C., Iwasawa, S., Ogawa, H., Hirata, A., Tsueda, J., Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5D
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CRYSTAL STRUCTURE OF THE CALCIUM PUMP IN THE E2+PI STATE
Descriptor:SERCA1a, SODIUM ION, PHOSPHATIDYLETHANOLAMINE, ...
Authors:Toyoshima, C., Iwasawa, S., Ogawa, H., Hirata, A., Tsueda, J., Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
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