Author results

1UEL
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SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B COMPLEXED WITH UBIQUITIN-INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A
Descriptor:UV excision repair protein RAD23 homolog B, 26S proteasome non-ATPase regulatory subunit 4
Authors:Fujiwara, K., Tenno, T., Jee, J.G., Sugasawa, K., Ohki, I., Kojima, C., Tochio, H., Hiroaki, H., Hanaoka, H., Shirakawa, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-19
Release date:2004-02-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
1WR1
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THE COMPLEX STURCTURE OF DSK2P UBA WITH UBIQUITIN
Descriptor:Ubiquitin, Ubiquitin-like protein DSK2
Authors:Ohno, A., Jee, J.G., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Hiroaki, H., kobayashi, H., Shirakawa, M.
Deposit date:2004-10-08
Release date:2005-04-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
1WR0
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STRUCTURAL CHARACTERIZATION OF THE MIT DOMAIN FROM HUMAN VPS4B
Descriptor:SKD1 protein
Authors:Takasu, H., Jee, J.G., Ohno, A., Goda, N., Fujiwara, K., Tochio, H., Shirakawa, M., Hiroaki, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-07
Release date:2005-08-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization of the MIT domain from human Vps4b
Biochem.Biophys.Res.Commun., 334, 2005
1X2G
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CRYSTAL STRUCTURE OF LIPATE-PROTEIN LIGASE A FROM ESCHERICHIA COLI
Descriptor:Lipoate-protein ligase A
Authors:Fujiwara, K., Toma, S., Okamura-Ikeda, K., Motokawa, Y., Nakagawa, A., Taniguchi, H.
Deposit date:2005-04-23
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of lipoate-protein ligase A from Escherichia coli: Determination of the lipoic acid-binding site
J.Biol.Chem., 280, 2005
1X2H
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CRYSTAL STRUCTURE OF LIPATE-PROTEIN LIGASE A FROM ESCHERICHIA COLI COMPLEXED WITH LIPOIC ACID
Descriptor:Lipoate-protein ligase A, LIPOIC ACID
Authors:Fujiwara, K., Toma, S., Okamura-Ikeda, K., Motokawa, Y., Nakagawa, A., Taniguchi, H.
Deposit date:2005-04-23
Release date:2005-08-02
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structure of lipoate-protein ligase A from Escherichia coli: Determination of the lipoic acid-binding site
J.Biol.Chem., 280, 2005
1WSR
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CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE CLEAVAGE SYSTEM
Descriptor:Aminomethyltransferase, SULFATE ION
Authors:Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.
Deposit date:2004-11-10
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005
1WSV
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CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE CLEAVAGE SYSTEM
Descriptor:Aminomethyltransferase, SULFATE ION, N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID
Authors:Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.
Deposit date:2004-11-11
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005
2E5A
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CRYSTAL STRUCTURE OF BOVINE LIPOYLTRANSFERASE IN COMPLEX WITH LIPOYL-AMP
Descriptor:Lipoyltransferase 1, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Fujiwara, K., Hosaka, H., Matsuda, M., Suzuki, M., Nakagawa, A.
Deposit date:2006-12-19
Release date:2007-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of bovine Lipoyltransferase in complex with lipoyl-AMP
J.Mol.Biol., 371, 2007
3A7A
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CRYSTAL STRUCTURE OF E. COLI LIPOATE-PROTEIN LIGASE A IN COMPLEX WITH OCTYL-AMP AND APOH-PROTEIN
Descriptor:Lipoate-protein ligase A, Glycine cleavage system H protein, N-OCTANE, ...
Authors:Fujiwara, K., Hosaka, H., Nakagawa, A.
Deposit date:2009-09-20
Release date:2010-01-19
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
3A7L
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CRYSTAL STRUCTURE OF E. COLI APOH-PROTEIN
Descriptor:Glycine cleavage system H protein
Authors:Fujiwara, K., Maita, N.
Deposit date:2009-09-28
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
3A7R
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CRYSTAL STRUCTURE OF E. COLI LIPOATE-PROTEIN LIGASE A IN COMPLEX WITH LIPOYL-AMP.
Descriptor:Lipoate-protein ligase A, 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, SULFATE ION, ...
Authors:Fujiwara, K., Hosaka, H.
Deposit date:2009-10-01
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
3A7U
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CRYSTAL STRUCTURE OF THE BOVINE LIPOYLTRANSFERASE IN ITS UNLIGANDED FORM
Descriptor:Lipoyltransferase 1, mitochondrial
Authors:Fujiwara, K., Hosaka, H., Nakagawa, A.
Deposit date:2009-10-05
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.44 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
3A8I
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CRYSTAL STRUCTURE OF ET-EHRED-5-CH3-THF COMPLEX
Descriptor:Aminomethyltransferase, Glycine cleavage system H protein, 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, ...
Authors:Okamura-Ikeda, K., Hosaka, H.
Deposit date:2009-10-06
Release date:2010-04-07
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism
J.Biol.Chem., 285, 2010
3A8J
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CRYSTAL STRUCTURE OF ET-EHRED COMPLEX
Descriptor:Aminomethyltransferase, Glycine cleavage system H protein
Authors:Okamura-Ikeda, K., Hosaka, H.
Deposit date:2009-10-06
Release date:2010-04-07
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism
J.Biol.Chem., 285, 2010
3A8K
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CRYSTAL STRUCTURE OF ETD97N-EHRED COMPLEX
Descriptor:Aminomethyltransferase, Glycine cleavage system H protein
Authors:Okamura-Ikeda, K., Hosaka, H.
Deposit date:2009-10-06
Release date:2010-04-07
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism
J.Biol.Chem., 285, 2010
3AB9
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CRYSTAL STRUCTURE OF LIPOYLATED E. COLI H-PROTEIN (REDUCED FORM)
Descriptor:Glycine cleavage system H protein, CALCIUM ION, CHLORIDE ION
Authors:Okamura-Ikeda, K., Maita, N.
Deposit date:2009-12-04
Release date:2010-04-07
Last modified:2013-08-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism
J.Biol.Chem., 285, 2010
3KLR
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BOVINE H-PROTEIN AT 0.88 ANGSTROM RESOLUTION
Descriptor:Glycine cleavage system H protein, SULFATE ION, GLYCEROL
Authors:Higashiura, A., Kurakane, T., Matsuda, M., Suzuki, M., Inaka, K., Sato, M., Tanaka, H., Fujiwara, K., Nakagawa, A.
Deposit date:2009-11-09
Release date:2010-06-09
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution
Acta Crystallogr.,Sect.D, 66, 2010
2RRE
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STRUCTURE AND FUNCTION OF THE N-TERMINAL NUCLEOLIN BINDING DOMAIN OF NUCLEAR VALOCINE CONTAINING PROTEIN LIKE 2 (NVL2) HARBORING A NUCLEOLAR LOCALIZATION SIGNAL
Descriptor:Putative uncharacterized protein
Authors:Fujiwara, Y., Fujiwara, K., Goda, N., Iwaya, N., Tenno, T., Shirakawa, M., Hiroaki, H.
Deposit date:2010-08-03
Release date:2011-04-06
Last modified:2011-11-23
Method:SOLUTION NMR
Cite:Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal
J.Biol.Chem., 286, 2011
2RRC
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SOLUTION STRUCTURE OF RNA APTAMER AGAINST AML1 RUNT DOMAIN
Descriptor:5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3'
Authors:Nomura, Y., Fujiwara, K., Chiba, M., Fukunaga, J., Tanaka, Y., Iibuchi, H., Tanaka, T., Nakamura, Y., Kawai, G., Kozu, T., Sakamoto, T.
Deposit date:2010-06-23
Release date:2011-06-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
To be Published
3ATI
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CRYSTAL STRUCTURE OF TRYPSIN COMPLEXED WITH (3-METHOXYPHENYL)METHANAMINE
Descriptor:Cationic trypsin, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Yamane, J., Yao, M., Tanaka, I.
Deposit date:2011-01-05
Release date:2011-08-24
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities
J.Appl.Crystallogr., 44, 2011
3ATK
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CRYSTAL STRUCTURE OF TRYPSIN COMPLEXED WITH CYCLOHEPTANAMINE
Descriptor:Cationic trypsin, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Yamane, J., Yao, M., Tanaka, I.
Deposit date:2011-01-05
Release date:2011-08-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities
J.Appl.Crystallogr., 44, 2011
3ATL
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CRYSTAL STRUCTURE OF TRYPSIN COMPLEXED WITH BENZAMIDINE
Descriptor:Cationic trypsin, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Yamane, J., Yao, M., Tanaka, I.
Deposit date:2011-01-05
Release date:2011-08-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities
J.Appl.Crystallogr., 44, 2011
3ATM
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CRYSTAL STRUCTURE OF TRYPSIN COMPLEXED WITH 2-(1H-INDOL-3-YL)ETHANAMINE
Descriptor:Cationic trypsin, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Yamane, J., Yao, M., Tanaka, I.
Deposit date:2011-01-05
Release date:2011-08-24
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities
J.Appl.Crystallogr., 44, 2011
3RXA
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CRYSTAL STRUCTURE OF TRYPSIN COMPLEXED WITH CYCLOHEPTANAMINE
Descriptor:Cationic trypsin, CALCIUM ION, GLYCEROL, ...
Authors:Yamane, J., Yao, M., Zhou, Y., Tanaka, I.
Deposit date:2011-05-10
Release date:2011-08-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities
J.Appl.Crystallogr., 44, 2011
3RXB
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CRYSTAL STRUCTURE OF TRYPSIN COMPLEXED WITH 4-GUANIDINOBUTANOIC ACID
Descriptor:Cationic trypsin, CALCIUM ION, GLYCEROL, ...
Authors:Yamane, J., Yao, M., Zhou, Y., Tanaka, I.
Deposit date:2011-05-10
Release date:2011-08-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:In-crystal affinity ranking of fragment hit compounds reveals a relationship with their inhibitory activities
J.Appl.Crystallogr., 44, 2011
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