2GYI | | DESIGN, SYNTHESIS, AND CHARACTERIZATION OF A POTENT XYLOSE ISOMERASE INHIBITOR, D-THREONOHYDROXAMIC ACID, AND HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE ENZYME-INHIBITOR COMPLEX | | Descriptor: | XYLOSE ISOMERASE, MAGNESIUM ION, 2,3,4,N-TETRAHYDROXY-BUTYRIMIDIC ACID | | Authors: | Allen, K.N., Lavie, A., Petsko, G.A., Ringe, D. | | Deposit date: | 1994-09-01 | | Release date: | 1995-07-10 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Design, Synthesis, and Characterization of a Potent Xylose Isomerase Inhibitor, D-Threonohydroxamic Acid, and High-Resolution X-Ray Crystallographic Structure of the Enzyme-Inhibitor Complex
Biochemistry, 34, 1995
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1XYL | | THE ROLE OF THE DIVALENT METAL ION IN SUGAR BINDING, RING OPENING, AND ISOMERIZATION BY D-XYLOSE ISOMERASE: REPLACEMENT OF A CATALYTIC METAL BY AN AMINO-ACID | | Descriptor: | XYLOSE ISOMERASE, MAGNESIUM ION, HYDROXIDE ION | | Authors: | Allen, K.N., Lavie, A., Petsko, G.A., Ringe, D. | | Deposit date: | 1993-12-07 | | Release date: | 1994-05-31 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Role of the divalent metal ion in sugar binding, ring opening, and isomerization by D-xylose isomerase: replacement of a catalytic metal by an amino acid.
Biochemistry, 33, 1994
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1XYM | | THE ROLE OF THE DIVALENT METAL ION IN SUGAR BINDING, RING OPENING, AND ISOMERIZATION BY D-XYLOSE ISOMERASE: REPLACEMENT OF A CATALYTIC METAL BY AN AMINO-ACID | | Descriptor: | XYLOSE ISOMERASE, D-GLUCOSE IN LINEAR FORM, MAGNESIUM ION, ... | | Authors: | Allen, K.N., Lavie, A., Petsko, G.A., Ringe, D. | | Deposit date: | 1993-12-07 | | Release date: | 1994-05-31 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Role of the divalent metal ion in sugar binding, ring opening, and isomerization by D-xylose isomerase: replacement of a catalytic metal by an amino acid.
Biochemistry, 33, 1994
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3R4C | | DIVERGENCE OF STRUCTURE AND FUNCTION AMONG PHOSPHATASES OF THE HALOALKANOATE (HAD) ENZYME SUPERFAMILY: ANALYSIS OF BT1666 FROM BACTEROIDES THETAIOTAOMICRON | | Descriptor: | Hydrolase, haloacid dehalogenase-like hydrolase, MAGNESIUM ION, ... | | Authors: | Allen, K.N., Lu, Z., Dunaway-Mariano, D. | | Deposit date: | 2011-03-17 | | Release date: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (1.82 Å) | | Cite: | The X-ray crystallographic structure and specificity profile of HAD superfamily phosphohydrolase BT1666: Comparison of paralogous functions in B. thetaiotaomicron.
Proteins, 79, 2011
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3U3H | | X-RAY CRYSTALLOGRAPHIC ANALYSIS OF D-XYLOSE ISOMERASE-CATALYZED ISOMERIZATION OF (R)-GLYCERALDEHYDE | | Descriptor: | Xylose isomerase, (2R)-propane-1,1,2,3-tetrol, FORMIC ACID, ... | | Authors: | Allen, K.N., Silvaggi, N.R., Toteva, M.M., Richard, J.P. | | Deposit date: | 2011-10-05 | | Release date: | 2011-10-26 | | Last modified: | 2011-12-07 | | Method: | X-RAY DIFFRACTION (0.97 Å) | | Cite: | Binding Energy and Catalysis by d-Xylose Isomerase: Kinetic, Product, and X-ray Crystallographic Analysis of Enzyme-Catalyzed Isomerization of (R)-Glyceraldehyde.
Biochemistry, 50, 2011
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5V8P | |
5V8R | |
5V8U | |
1XYA | | X-RAY CRYSTALLOGRAPHIC STRUCTURES OF D-XYLOSE ISOMERASE-SUBSTRATE COMPLEXES POSITION THE SUBSTRATE AND PROVIDE EVIDENCE FOR METAL MOVEMENT DURING CATALYSIS | | Descriptor: | XYLOSE ISOMERASE, MAGNESIUM ION, HYDROXIDE ION | | Authors: | Lavie, A., Allen, K.N., Petsko, G.A., Ringe, D. | | Deposit date: | 1994-01-03 | | Release date: | 1994-05-31 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (1.81 Å) | | Cite: | X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis.
Biochemistry, 33, 1994
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1XYB | | X-RAY CRYSTALLOGRAPHIC STRUCTURES OF D-XYLOSE ISOMERASE-SUBSTRATE COMPLEXES POSITION THE SUBSTRATE AND PROVIDE EVIDENCE FOR METAL MOVEMENT DURING CATALYSIS | | Descriptor: | XYLOSE ISOMERASE, D-GLUCOSE IN LINEAR FORM, MAGNESIUM ION | | Authors: | Lavie, A., Allen, K.N., Petsko, G.A., Ringe, D. | | Deposit date: | 1994-01-03 | | Release date: | 1994-05-31 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (1.96 Å) | | Cite: | X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis.
Biochemistry, 33, 1994
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1XYC | | X-RAY CRYSTALLOGRAPHIC STRUCTURES OF D-XYLOSE ISOMERASE-SUBSTRATE COMPLEXES POSITION THE SUBSTRATE AND PROVIDE EVIDENCE FOR METAL MOVEMENT DURING CATALYSIS | | Descriptor: | XYLOSE ISOMERASE, 3-O-METHYLFRUCTOSE IN LINEAR FORM, MAGNESIUM ION | | Authors: | Lavie, A., Allen, K.N., Petsko, G.A., Ringe, D. | | Deposit date: | 1994-01-03 | | Release date: | 1994-05-31 | | Last modified: | 2017-11-29 | | Method: | X-RAY DIFFRACTION (2.19 Å) | | Cite: | X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis.
Biochemistry, 33, 1994
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1FEZ | | THE CRYSTAL STRUCTURE OF BACILLUS CEREUS PHOSPHONOACETALDEHYDE HYDROLASE COMPLEXED WITH TUNGSTATE, A PRODUCT ANALOG | | Descriptor: | PHOSPHONOACETALDEHYDE HYDROLASE, MAGNESIUM ION, TUNGSTATE(VI)ION | | Authors: | Morais, M.C., Zhang, W., Baker, A.S., Zhang, G., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2000-07-24 | | Release date: | 2000-10-04 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | The crystal structure of bacillus cereus phosphonoacetaldehyde hydrolase: insight into catalysis of phosphorus bond cleavage and catalytic diversification within the HAD enzyme superfamily.
Biochemistry, 39, 2000
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1J4E | | FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE COVALENTLY BOUND TO THE SUBSTRATE DIHYDROXYACETONE PHOSPHATE | | Descriptor: | FRUCTOSE-BISPHOSPHATE ALDOLASE A, 1,3-DIHYDROXYACETONEPHOSPHATE | | Authors: | Choi, K.H., Shi, J., Hopkins, C.E., Tolan, D.R., Allen, K.N. | | Deposit date: | 2001-09-19 | | Release date: | 2002-02-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.65 Å) | | Cite: | Snapshots of catalysis: the structure of fructose-1,6-(bis)phosphate aldolase covalently bound to the substrate dihydroxyacetone phosphate.
Biochemistry, 40, 2001
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1LVH | | THE STRUCTURE OF PHOSPHORYLATED BETA-PHOSPHOGLUCOMUTASE FROM LACTOCCOCUS LACTIS TO 2.3 ANGSTROM RESOLUTION | | Descriptor: | beta-phosphoglucomutase, MAGNESIUM ION | | Authors: | Lahiri, S.D., Zhang, G., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2002-05-28 | | Release date: | 2002-08-14 | | Last modified: | 2019-11-20 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Caught in the act: the structure of phosphorylated beta-phosphoglucomutase from Lactococcus lactis.
Biochemistry, 41, 2002
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1U7O | | MAGNESIUM DEPENDENT PHOSPHATASE 1 (MDP-1) | | Descriptor: | magnesium-dependent phosphatase-1, ACETATE ION | | Authors: | Peisach, E., Selengut, J.D., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2004-08-04 | | Release date: | 2004-10-26 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | X-ray crystal structure of the hypothetical phosphotyrosine phosphatase MDP-1 of the haloacid dehalogenase superfamily
Biochemistry, 43, 2004
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1U7P | | X-RAY CRYSTAL STRUCTURE OF THE HYPOTHETICAL PHOSPHOTYROSINE PHOSPHATASE MDP-1 OF THE HALOACID DEHALOGENASE SUPERFAMILY | | Descriptor: | magnesium-dependent phosphatase-1, MAGNESIUM ION, TUNGSTATE(VI)ION | | Authors: | Peisach, E., Selengut, J.D., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2004-08-04 | | Release date: | 2004-10-19 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | X-ray Crystal Structure of the Hypothetical Phosphotyrosine
Phosphatase MDP-1 of the Haloacid Dehalogenase Superfamily
Biochemistry, 43, 2004
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2ODA | | CRYSTAL STRUCTURE OF PSPTO_2114 | | Descriptor: | Hypothetical protein PSPTO_2114, MAGNESIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | | Authors: | Peisach, E., Allen, K.N., Dunaway-Mariano, D., Wang, L., Burroughs, A.M., Aravind, L. | | Deposit date: | 2006-12-22 | | Release date: | 2007-09-04 | | Last modified: | 2017-10-18 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | The X-ray crystallographic structure and activity analysis of a Pseudomonas-specific subfamily of the HAD enzyme superfamily evidences a novel biochemical function.
Proteins, 70, 2007
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3FM9 | | ANALYSIS OF THE STRUCTURAL DETERMINANTS UNDERLYING DISCRIMINATION BETWEEN SUBSTRATE AND SOLVENT IN BETA-PHOSPHOGLUCOMUTASE CATALYSIS | | Descriptor: | Beta-phosphoglucomutase, MAGNESIUM ION | | Authors: | Finci, L., Lahiri, S., Peisach, E., Allen, K.N. | | Deposit date: | 2008-12-19 | | Release date: | 2009-06-09 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Analysis of the structural determinants underlying discrimination between substrate and solvent in beta-phosphoglucomutase catalysis.
Biochemistry, 48, 2009
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3LTQ | |
1CQD | | THE 2.1 ANGSTROM STRUCTURE OF A CYSTEINE PROTEASE WITH PROLINE SPECIFICITY FROM GINGER RHIZOME, ZINGIBER OFFICINALE | | Descriptor: | PROTEIN (PROTEASE II), N-ACETYL-D-GLUCOSAMINE, BETA-L-FUCOSE, ... | | Authors: | Choi, K.H., Laursen, R.A., Allen, K.N. | | Deposit date: | 1999-06-15 | | Release date: | 1999-09-28 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | The 2.1 A structure of a cysteine protease with proline specificity from ginger rhizome, Zingiber officinale.
Biochemistry, 38, 1999
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1O03 | | STRUCTURE OF PENTAVALENT PHOSPHOROUS INTERMEDIATE OF AN ENZYME CATALYZED PHOSPHORYL TRANSFER REACTION OBSERVED ON COCRYSTALLIZATION WITH GLUCOSE 6-PHOSPHATE | | Descriptor: | beta-phosphoglucomutase, ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE, MAGNESIUM ION | | Authors: | Lahiri, S.D., Zhang, G., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2003-02-20 | | Release date: | 2003-03-18 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction.
Science, 299, 2003
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1O08 | | STRUCTURE OF PENTAVALENT PHOSPHOROUS INTERMEDIATE OF AN ENZYME CATALYZED PHOSPHORYL TRANSFER REACTION OBSERVED ON COCRYSTALLIZATION WITH GLUCOSE 1-PHOSPHATE | | Descriptor: | beta-phosphoglucomutase, ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE, MAGNESIUM ION | | Authors: | Lahiri, S.D., Zhang, G., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2003-02-20 | | Release date: | 2003-03-18 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.2 Å) | | Cite: | The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction.
Science, 299, 2003
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1RDF | | G50P MUTANT OF PHOSPHONOACETALDEHYDE HYDROLASE IN COMPLEX WITH SUBSTRATE ANALOGUE VINYL SULFONATE | | Descriptor: | phosphonoacetaldehyde hydrolase, MAGNESIUM ION, ETHANESULFONIC ACID | | Authors: | Lahiri, S.D., Zhang, G., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2003-11-05 | | Release date: | 2004-08-31 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Analysis of the substrate specificity loop of the HAD superfamily cap domain
Biochemistry, 43, 2004
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1RQL | | CRYSTAL STRUCTURE OF PHOSPONOACETALDEHYDE HYDROLASE COMPLEXED WITH MAGNESIUM AND THE INHIBITOR VINYL SULFONATE | | Descriptor: | Phosphonoacetaldehyde Hydrolase, MAGNESIUM ION, VINYLSULPHONIC ACID | | Authors: | Morais, M.C., Zhang, G., Zhang, W., Olsen, D.B., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2003-12-05 | | Release date: | 2004-04-20 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | X-ray crystallographic and site-directed mutagenesis
analysis of the mechanism of Schiff-base formation in
phosphonoacetaldehyde hydrolase catalysis
J.Biol.Chem., 279, 2004
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1RQN | | PHOSPHONOACETALDEHYDE HYDROLASE COMPLEXED WITH MAGNESIUM | | Descriptor: | Phosphonoacetaldehyde Hydrolase, MAGNESIUM ION | | Authors: | Morais, M.C., Zhang, G., Zhang, W., Olsen, D.B., Dunaway-Mariano, D., Allen, K.N. | | Deposit date: | 2003-12-05 | | Release date: | 2004-04-20 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | X-ray crystallographic and site-directed mutagenesis
analysis of the mechanism of Schiff-base formation in
phosphonoacetaldehyde hydrolase catalysis
J.Biol.Chem., 279, 2004
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