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7F3N
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BU of 7f3n by Molmil
Structure of PopP2 in apo form
Descriptor: Type III effector protein popp2
Authors:Xia, Y, Zhang, Z.M.
Deposit date:2021-06-16
Release date:2021-11-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.351856 Å)
Cite:Secondary-structure switch regulates the substrate binding of a YopJ family acetyltransferase.
Nat Commun, 12, 2021
1LKN
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BU of 1lkn by Molmil
Solution NMR Structure of Protein TM_1112 from Thermotoga maritima. Ontario Centre for Structural Proteomics Target TM1112_1_89; Northeast Structural Genomics Consortium Target VT74.
Descriptor: hypothetical protein tm1112
Authors:Xia, Y, Yee, A, Semesi, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-04-25
Release date:2003-06-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of Hypothetical Protein tm1112
to be published
7F32
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BU of 7f32 by Molmil
Ny-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases
Descriptor: SYCNCLCRRGVCRCICTI
Authors:Xia, Y, Liu, C.F.
Deposit date:2021-06-15
Release date:2022-09-07
Method:SOLUTION NMR
Cite:N gamma-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases.
Angew.Chem.Int.Ed.Engl., 60, 2021
3R04
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BU of 3r04 by Molmil
The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors
Descriptor: 5-{6-[(trans-4-aminocyclohexyl)amino]pyrazin-2-yl}-1-benzofuran-2-carboxylic acid, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase pim-1
Authors:Xiang, Y, Hirth, B, Asmussen, G, Biemann, H.-P, Good, A, Fitzgerald, M, Gladysheva, T, Jancsics, K, Liu, J, Metz, M, Papoulis, A, Skerlj, R, Stepp, D.J, Wei, R.R.
Deposit date:2011-03-07
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
5XVN
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BU of 5xvn by Molmil
E. far Cas1-Cas2/prespacer binary complex
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ...
Authors:Xiao, Y, Ng, S, Nam, K.H, Ke, A.
Deposit date:2017-06-28
Release date:2017-10-04
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
Nature, 550, 2017
1P9G
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BU of 1p9g by Molmil
Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Ecommia ulmoides Oliver at atomic resolution
Descriptor: ACETATE ION, EAFP 2
Authors:Xiang, Y, Huang, R.H, Liu, X.Z, Wang, D.C.
Deposit date:2003-05-12
Release date:2004-06-01
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (0.84 Å)
Cite:Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Eucommia ulmoides Oliver at an atomic resolution.
J.Struct.Biol., 148, 2004
8D6J
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BU of 8d6j by Molmil
Human Ago2 bound to miR122(21nt) with PIWI loop swapped to AtAgo10 sequence
Descriptor: MAGNESIUM ION, Protein argonaute-2, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')
Authors:Xiao, Y, MacRae, I.
Deposit date:2022-06-06
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength.
Embo Rep., 24, 2023
8D71
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BU of 8d71 by Molmil
Human Ago2 bound to miR122(21nt)
Descriptor: MAGNESIUM ION, Protein argonaute-2, miR-122-21nt
Authors:Xiao, Y, MacRae, I.
Deposit date:2022-06-07
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength.
Embo Rep., 24, 2023
8D0Y
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BU of 8d0y by Molmil
Crystal Structure of HIV-1 BG505 SOSIPv8 Trimer in Complex with CD4bs targeting antibody 21N13 and interface targeting antibody 35O22 at 4.7 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22scFv Heavy Chain Variable, ...
Authors:Xian, Y, Wilson, I.A.
Deposit date:2022-05-26
Release date:2023-07-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (4.7 Å)
Cite:The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
To Be Published
8D50
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BU of 8d50 by Molmil
Crystal Structure of Mosaic HIV-1 Envelope (MosM3.1) in Complex with antibodies PGT124 and 35O22 at 4.3 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 Fab heavy chain, ...
Authors:Xian, Y, Wilson, I.A.
Deposit date:2022-06-03
Release date:2023-12-13
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (4.32 Å)
Cite:Structural and Antigenic Characterization of B Cell Mosaic Env Trimers
To Be Published
8D01
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BU of 8d01 by Molmil
The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
Descriptor: 21N13 Fab heavy chain, 21N13 Fab light chain
Authors:Xian, Y, Wilson, I.A.
Deposit date:2022-05-25
Release date:2023-12-13
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structural and Antigenic Characterization of B Cell Mosaic Env Trimers
To Be Published
8D4R
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BU of 8d4r by Molmil
Crystal Structure of Mosaic HIV-1 Envelope (MosM3.2) in Complex with antibodies PGT124 and 35O22 at 3.8 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 Fab heavy chain, ...
Authors:Xian, Y, Wilson, I.A.
Deposit date:2022-06-02
Release date:2023-12-13
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.81 Å)
Cite:The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
To Be Published
8D53
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BU of 8d53 by Molmil
Crystal Structure of Mosaic HIV-1 Envelope (MosM3.3) in Complex with antibodies PGT124 and 35O22 at 3.25 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22scFV Heavy chain variable, ...
Authors:Xian, Y, Wilson, I.A.
Deposit date:2022-06-03
Release date:2024-07-24
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Structural and Antigenic Characterization of B Cell Mosaic Env Trimers
To Be Published
5KKB
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BU of 5kkb by Molmil
Structure of mouse Golgi alpha-1,2-mannosidase IA and Man9GlcNAc2-PA complex
Descriptor: 1,4-BUTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ...
Authors:Xiang, Y, Moremen, K.W.
Deposit date:2016-06-21
Release date:2016-12-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.774 Å)
Cite:Substrate recognition and catalysis by GH47 alpha-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
7JVB
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BU of 7jvb by Molmil
Crystal structure of the SARS-CoV-2 spike receptor-binding domain (RBD) with nanobody Nb20
Descriptor: CACODYLATE ION, Nanobody Nb20, Spike protein S1
Authors:Xiang, Y, Xiao, Z, Liu, H, Sang, Z, Schneidman-Duhovny, D, Zhang, C, Shi, Y.
Deposit date:2020-08-20
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.287 Å)
Cite:Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2.
Science, 370, 2020
6C66
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BU of 6c66 by Molmil
CRISPR RNA-guided surveillance complex, pre-nicking
Descriptor: CRISPR-associated helicase, Cas3 family, CRISPR-associated protein, ...
Authors:Xiao, Y, Luo, M, Liao, M, Ke, A.
Deposit date:2018-01-17
Release date:2018-06-27
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:Structure basis for RNA-guided DNA degradation by Cascade and Cas3.
Science, 361, 2018
8KBD
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BU of 8kbd by Molmil
Structure of CmTad1 complexed with cAAG
Descriptor: Thoeris anti-defense 1, ZINC ION, cAAG
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structure of CmTad1 complexed with cAAG
To Be Published
8KBI
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BU of 8kbi by Molmil
Structure of apo-AcrIIA7
Descriptor: Inhibitor of Type II CRISPR-Cas system
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of apo-AcrIIA7
To Be Published
8KBM
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BU of 8kbm by Molmil
Structure of AcrIIA7 complexed with cGG
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Inhibitor of Type II CRISPR-Cas system
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Structure of AcrIIA7 complexed with cGG
To Be Published
8KBH
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BU of 8kbh by Molmil
Structure of CbTad1 complexed with 2',3'-cGAMP and cA3
Descriptor: (2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDE, Thoeris anti-defense 1, cGAMP
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure of CbTad1 complexed with 2',3'-cGAMP and cA3
To Be Published
8KBJ
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BU of 8kbj by Molmil
Structure of HgmTad2 complexed with 1',2'-cADPR
Descriptor: (1S,3R,4R,6R,9S,11R,14R,15S,16R,18R)-4-(6-amino-9H-purin-9-yl)-9,11,15,16,18-pentahydroxy-2,5,8,10,12,17-hexaoxa-9lambda~5~,11lambda~5~-diphosphatricyclo[12.2.1.1~3,6~]octadecane-9,11-dione, Inhibitor of Type II CRISPR-Cas system
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-21
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of HgmTad2 complexed with 1',2'-cADPR
To Be Published
8KBG
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BU of 8kbg by Molmil
Structure of CbTad1 complexed with 2',3'-cGAMP
Descriptor: Thoeris anti-defense 1, cGAMP
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure of CbTad1 complexed with 2',3'-cGAMP
To Be Published
8KBC
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BU of 8kbc by Molmil
Structure of CmTad1 complexed with cAAA
Descriptor: (2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDE, Thoeris anti-defense 1, ZINC ION
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of CmTad1 complexed with cAAA
To Be Published
8KBE
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BU of 8kbe by Molmil
Structure of CbTad1 complexed with 1',3'-cADPR
Descriptor: (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione, Thoeris anti-defense 1
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structure of CbTad1 complexed with 1',3'-cADPR
To Be Published
8KBF
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BU of 8kbf by Molmil
Structure of CbTad1 complexed with 1',3'-cADPR and cA3
Descriptor: (2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDE, (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione, Thoeris anti-defense 1
Authors:Xiao, Y, Feng, Y.
Deposit date:2023-08-04
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structure of CbTad1 complexed with 1',3'-cADPR and cA3
To Be Published

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PDB entries from 2024-09-18

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