Author results

1OAV
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OMEGA-AGATOXIN IVA
Descriptor:OMEGA-AGATOXIN IVA
Authors:Kim, J.I., Konishi, S., Iwai, H., Kohno, T., Gouda, H., Shimada, I., Sato, K., Arata, Y.
Deposit date:1995-06-28
Release date:1995-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
J.Mol.Biol., 250, 1995
1OAW
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OMEGA-AGATOXIN IVA
Descriptor:OMEGA-AGATOXIN IVA
Authors:Kim, J.I., Konishi, S., Iwai, H., Kohno, T., Gouda, H., Shimada, I., Sato, K., Arata, Y.
Deposit date:1995-06-28
Release date:1995-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
J.Mol.Biol., 250, 1995
1NGP
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N1G9 (IGG1-LAMBDA) FAB FRAGMENT COMPLEXED WITH (4-HYDROXY-3-NITROPHENYL) ACETATE
Descriptor:N1G9 (IGG1-LAMBDA), SULFATE ION, 2-(4-HYDROXY-3-NITROPHENYL)ACETIC ACID
Authors:Mizutani, R., Satow, Y.
Deposit date:1995-06-23
Release date:1996-07-11
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structures of the Fab fragment of murine N1G9 antibody from the primary immune response and of its complex with (4-hydroxy-3-nitrophenyl)acetate.
J.Mol.Biol., 254, 1995
1NGQ
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N1G9 (IGG1-LAMBDA) FAB FRAGMENT
Descriptor:N1G9 (IGG1-LAMBDA), SULFATE ION
Authors:Mizutani, R., Satow, Y.
Deposit date:1995-06-23
Release date:1996-07-11
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structures of the Fab fragment of murine N1G9 antibody from the primary immune response and of its complex with (4-hydroxy-3-nitrophenyl)acetate.
J.Mol.Biol., 254, 1995
1BDC
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STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, 10 STRUCTURES
Descriptor:STAPHYLOCOCCUS AUREUS PROTEIN A
Authors:Gouda, H., Torigoe, H., Saito, A., Sato, M., Arata, Y., Shimada, I.
Deposit date:1996-06-28
Release date:1997-01-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
1BDD
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STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:STAPHYLOCOCCUS AUREUS PROTEIN A
Authors:Gouda, H., Torigoe, H., Saito, A., Sato, M., Arata, Y., Shimada, I.
Deposit date:1996-06-28
Release date:1997-01-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
1DLF
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HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25
Descriptor:ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S), SULFATE ION
Authors:Nakasako, M., Takahashi, H., Shimada, I., Arata, Y.
Deposit date:1998-07-14
Release date:1999-07-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
2DLF
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HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75
Descriptor:PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)), PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)), SULFATE ION
Authors:Nakasako, M., Takahashi, H., Shimada, I., Arata, Y.
Deposit date:1998-12-17
Release date:1999-12-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody.
J.Mol.Biol., 291, 1999
1D1H
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SOLUTION STRUCTURE OF HANATOXIN 1
Descriptor:HANATOXIN TYPE 1
Authors:Takahashi, H., Kim, J.I., Sato, K., Swartz, K.J., Shimada, I.
Deposit date:1999-09-16
Release date:2000-09-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of hanatoxin1, a gating modifier of voltage-dependent K(+) channels: common surface features of gating modifier toxins.
J.Mol.Biol., 297, 2000
1L4V
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SOLUTION STRUCTURE OF SAPECIN
Descriptor:Sapecin
Authors:Hanzawa, H., Iwai, H., Takeuchi, K., Kuzuhara, T., Komano, H., Kohda, D., Inagaki, F., Natori, S., Arata, Y., Shimada, I.
Deposit date:2002-03-06
Release date:2002-03-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin.
FEBS Lett., 269, 1990
1KOZ
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SOLUTION STRUCTURE OF OMEGA-GRAMMOTOXIN SIA
Descriptor:Voltage-dependent Channel Inhibitor
Authors:Takeuchi, K., Park, E.J., Lee, C.W., Kim, J.I., Takahashi, H., Swartz, K.J., Shimada, I.
Deposit date:2001-12-25
Release date:2002-08-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of omega-grammotoxin SIA, a gating modifier of P/Q and N-type Ca(2+) channel.
J.Mol.Biol., 321, 2002
1IE6
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SOLUTION STRUCTURE OF IMPERATOXIN A
Descriptor:IMPERATOXIN A
Authors:Lee, C.W., Takeuchi, K., Takahashi, H., Sato, K., Shimada, I., Kim, D.H., Kim, J.I.
Deposit date:2001-04-07
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular basis of the high-affinity activation of type 1 ryanodine receptors by imperatoxin A.
Biochem.J., 377, 2004
1WZ1
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CRYSTAL STRUCTURE OF THE FV FRAGMENT COMPLEXED WITH DANSYL-LYSINE
Descriptor:Ig light chain, Ig heavy chain, N~6~-{[5-(DIMETHYLAMINO)-1-NAPHTHYL]SULFONYL}-L-LYSINE
Authors:Nakasako, M., Oka, T., Mashumo, M., Takahashi, H., Shimada, I., Yamaguchi, Y., Kato, K., Arata, Y.
Deposit date:2005-02-21
Release date:2006-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten
J.Mol.Biol., 351, 2005
2I83
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HYALURONAN-BINDING DOMAIN OF CD44 IN ITS LIGAND-BOUND FORM
Descriptor:CD44 antigen
Authors:Takeda, M., Ogino, S., Umemoto, R., Sakakura, M., Kajiwara, M., Sugahara, K.N., Hayasaka, H., Miyasaka, M., Terasawa, H., Shimada, I.
Deposit date:2006-09-01
Release date:2006-11-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Ligand-induced Structural Changes of the CD44 Hyaluronan-binding Domain Revealed by NMR
J.Biol.Chem., 281, 2006
2NOO
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CRYSTAL STRUCTURE OF MUTANT NIKA
Descriptor:Nickel-binding periplasmic protein, IODIDE ION, NICKEL (II) ION
Authors:Addy, C., Ohara, M., Kawai, F., Kidera, A., Ikeguchi, M., Fuchigami, S., Osawa, M., Shimada, I., Park, S.Y., Tame, J.R.H., Heddle, J.G.
Deposit date:2006-10-26
Release date:2007-01-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
2Z4F
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SOLUTION STRUCTURE OF THE DISCOIDIN DOMAIN OF DDR2
Descriptor:Discoidin domain-containing receptor 2
Authors:Ichikawa, O., Osawa, M., Nishida, N., Goshima, N., Nomura, N., Shimada, I.
Deposit date:2007-06-16
Release date:2007-09-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of the collagen-binding mode of discoidin domain receptor 2
Embo J., 26, 2007
2WUH
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CRYSTAL STRUCTURE OF THE DDR2 DISCOIDIN DOMAIN BOUND TO A TRIPLE- HELICAL COLLAGEN PEPTIDE
Descriptor:DISCOIDIN DOMAIN RECEPTOR 2, COLLAGEN PEPTIDE
Authors:Carafoli, F., Bihan, D., Stathopoulos, S., Konitsiotis, A.D., Kvansakul, M., Farndale, R.W., Leitinger, B., Hohenester, E.
Deposit date:2009-10-05
Release date:2009-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic Insight Into Collagen Recognition by Discoidin Domain Receptor 2
Structure, 17, 2009
2RQG
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STRUCTURE OF GSPT1/ERF3A-PABC
Descriptor:G1 to S phase transition 1, Polyadenylate-binding protein 1
Authors:Osawa, M., Nakanishi, T., Hosoda, N., Uchida, S., Hoshino, T., Katada, I., Shimada, I.
Deposit date:2009-05-08
Release date:2010-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs
To be Published
2RQH
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STRUCTURE OF GSPT1/ERF3A-PABC
Descriptor:G1 to S phase transition 1, Polyadenylate-binding protein 1
Authors:Osawa, M., Nakanishi, T., Hosoda, N., Uchida, S., Hoshino, T., Katada, I., Shimada, I.
Deposit date:2009-05-08
Release date:2010-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs
To be Published
2RR8
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SOLUTION STRUCTURE OF CALPONIN HOMOLOGY DOMAIN OF IQGAP1
Descriptor:IQGAP1 protein
Authors:Umemoto, R., Nishida, N., Ogino, S., Shimada, I.
Deposit date:2010-06-09
Release date:2010-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the calponin homology domain of human IQGAP1 and its implications for the actin recognition mode.
J.Biomol.Nmr, 48, 2010
2RSG
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SOLUTION STRUCTURE OF THE CERT PH DOMAIN
Descriptor:Collagen type IV alpha-3-binding protein
Authors:Sugiki, T., Takeuchi, K., Tokunaga, Y., Kumagai, K., Kawano, M., Nishijima, M., Hanada, K., Takahashi, H., Shimada, I.
Deposit date:2012-02-25
Release date:2012-08-15
Last modified:2013-10-16
Method:SOLUTION NMR
Cite:Structural basis for the Golgi association by the pleckstrin homology domain of the ceramide trafficking protein (CERT)
J.Biol.Chem., 287, 2012
2LMK
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SOLUTION STRUCTURE OF MOUSE PHEROMONE ESP1
Descriptor:Exocrine gland-secreting peptide 1
Authors:Yoshinaga, S., Sato, T., Hirakane, M., Esaki, K., Hamaguchi, T., Haga-Yamanaka, S., Tsunoda, M., Kimoto, H., Shimada, I., Touhara, K., Terasawa, H.
Deposit date:2011-12-06
Release date:2013-04-17
Last modified:2013-04-24
Method:SOLUTION NMR
Cite:Structure of the Mouse Sex Peptide Pheromone ESP1 Reveals a Molecular Basis for Specific Binding to the Class-C G-Protein-Coupled Vomeronasal Receptor
J.Biol.Chem., 2013
2MLO
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HUMAN CCR2 MEMBRANE-PROXIMAL C-TERMINAL REGION (PRO-C) IN A MEMBRANE BOUND FORM
Descriptor:MCP-1 receptor
Authors:Esaki, K., Yoshinaga, S., Tsuji, T., Toda, E., Terashima, Y., Saitoh, T., Kohda, D., Kohno, T., Osawa, M., Ueda, T., Shimada, I., Matsushima, K., Terasawa, H.
Deposit date:2014-03-04
Release date:2014-10-08
Last modified:2014-10-29
Method:SOLUTION NMR
Cite:Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT
Febs J., 2014
2MLQ
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HUMAN CCR2 MEMBRANE-PROXIMAL C-TERMINAL REGION (PRO-C) IN A FROUNT BOUND FORM
Descriptor:MCP-1 receptor
Authors:Esaki, K., Yoshinaga, S., Tsuji, T., Toda, E., Terashima, Y., Saitoh, T., Kohda, D., Kohno, T., Osawa, M., Ueda, T., Shimada, I., Matsushima, K., Terasawa, H.
Deposit date:2014-03-04
Release date:2014-10-08
Last modified:2014-10-29
Method:SOLUTION NMR
Cite:Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT
Febs J., 2014
3WZZ
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CRYSTAL STRUCTURE OF PIP4KIIBETA
Descriptor:Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
Authors:Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
Deposit date:2014-10-08
Release date:2015-10-14
Last modified:2016-02-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis
Mol.Cell, 61, 2016
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