Author results

1IYF
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SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HUMAN PARKIN
Descriptor:parkin
Authors:Sakata, E., Yamaguchi, Y., Kurimoto, E., Kikuchi, J., Yokoyama, S., Kawahara, H., Yokosawa, H., Hattori, N., Mizuno, Y., Tanaka, K., Kato, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-08-13
Release date:2003-03-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain
EMBO REP., 4, 2003
3A33
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UBCH5B~UBIQUITIN CONJUGATE
Descriptor:Ubiquitin-conjugating enzyme E2 D2, Ubiquitin, GLYCEROL
Authors:Sakata, E., Satoh, T., Yamamoto, S., Yamaguchi, Y., Yagi-Utsumi, M., Kurimoto, E., Wakatsuki, S., Kato, K.
Deposit date:2009-06-08
Release date:2009-11-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of UbcH5b~Ubiquitin Intermediate: Insight into the Formation of the Self-Assembled E2~Ub Conjugates
Structure, 18, 2010
1WXS
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SOLUTION STRUCTURE OF UFM1, A UBIQUITIN-FOLD MODIFIER
Descriptor:Ubiquitin-fold Modifier 1
Authors:Sasakawa, H., Sakata, E., Yamaguchi, Y., Komatsu, M., Tatsumi, K., Kominami, E., Tanaka, K., Kato, K.
Deposit date:2005-02-01
Release date:2006-04-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and dynamics of Ufm1, a ubiquitin-fold modifier 1
Biochem.Biophys.Res.Commun., 343, 2006
2Z5B
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z5C
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W, Proteasome component PUP2
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z5E
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CRYSTAL STRUCTURE OF PROTEASOME ASSEMBLING CHAPERONE 3
Descriptor:Proteasome Assembling Chaperone 3
Authors:Okamoto, K., Kurimoto, E., Sakata, E., Suzuki, A., Yamane, T., Hirano, Y., Murata, S., Tanaka, K., Kato, K.
Deposit date:2007-07-06
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2ZCB
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CRYSTAL STRUCTURE OF UBIQUITIN P37A/P38A
Descriptor:Ubiquitin, ZINC ION
Authors:Kitahara, R., Tanaka, T., Sakata, E., Yamaguchi, Y., Kato, K., Yokoyama, S.
Deposit date:2007-11-08
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of ubiquitin P37A/P38A
To be published
3ALB
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CYCLIC LYS48-LINKED TETRAUBIQUITIN
Descriptor:ubiquitin, SULFATE ION
Authors:Satoh, T., Sakata, E., Yamamoto, S., Yamaguchi, Y., Sumiyoshi, A., Wakatsuki, S., Kato, K.
Deposit date:2010-07-29
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of cyclic Lys48-linked tetraubiquitin
Biochem.Biophys.Res.Commun., 2010
5A5B
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STRUCTURE OF THE 26S PROTEASOME-UBP6 COMPLEX
Descriptor:PROTEASOME COMPONENT PRE3, PROTEASOME COMPONENT PUP1, PROTEASOME COMPONENT PUP3, ...
Authors:Aufderheide, A., Beck, F., Stengel, F., Hartwig, M., Schweitzer, A., Pfeifer, G., Goldberg, A.L., Sakata, E., Baumeister, W., Foerster, F.
Deposit date:2015-06-17
Release date:2015-07-22
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Structural Characterization of the Interaction of Ubp6 with the 26S Proteasome.
Proc.Natl.Acad.Sci.USA, 112, 2015
5LN3
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THE HUMAN 26S PROTEASOME AT 6.8 ANG.
Descriptor:26S proteasome non-ATPase regulatory subunit 2, Proteasome subunit beta type-6, Proteasome subunit beta type-7, ...
Authors:Schweitzer, A., Beck, F., Sakata, E., Unverdorben, P.
Deposit date:2016-08-03
Release date:2017-03-22
Last modified:2017-05-24
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.
Mol. Cell Proteomics, 16, 2017
5MP9
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26S PROTEASOME IN PRESENCE OF ATP (S1)
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Wehmer, M., Rudack, T., Beck, F., Aufderheide, A., Pfeifer, G., Plitzko, J.M., Foerster, F., Schulten, K., Baumeister, W., Sakata, E.
Deposit date:2016-12-16
Release date:2017-03-08
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural insights into the functional cycle of the ATPase module of the 26S proteasome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MPA
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26S PROTEASOME IN PRESENCE OF ATP (S2)
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Wehmer, M., Rudack, T., Beck, F., Aufderheide, A., Pfeifer, G., Plitzko, J.M., Foerster, F., Schulten, K., Baumeister, W., Sakata, E.
Deposit date:2016-12-16
Release date:2017-03-08
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural insights into the functional cycle of the ATPase module of the 26S proteasome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MPB
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26S PROTEASOME IN PRESENCE OF AMP-PNP (S3)
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Wehmer, M., Rudack, T., Beck, F., Aufderheide, A., Pfeifer, G., Plitzko, J.M., Foerster, F., Schulten, K., Baumeister, W., Sakata, E.
Deposit date:2016-12-16
Release date:2017-03-08
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Structural insights into the functional cycle of the ATPase module of the 26S proteasome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MPC
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26S PROTEASOME IN PRESENCE OF BEFX (S4)
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Wehmer, M., Rudack, T., Beck, F., Aufderheide, A., Pfeifer, G., Plitzko, J.M., Foerster, F., Schulten, K., Baumeister, W., Sakata, E.
Deposit date:2016-12-16
Release date:2017-03-08
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Structural insights into the functional cycle of the ATPase module of the 26S proteasome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MPD
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26S PROTEASOME IN PRESENCE OF ATP (S1)
Descriptor:26S proteasome regulatory subunit RPN10, Ubiquitin carboxyl-terminal hydrolase RPN11, 26S proteasome regulatory subunit RPN12, ...
Authors:Wehmer, M., Rudack, T., Beck, F., Aufderheide, A., Pfeifer, G., Plitzko, J.M., Foerster, F., Schulten, K., Baumeister, W., Sakata, E.
Deposit date:2016-12-16
Release date:2017-03-08
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural insights into the functional cycle of the ATPase module of the 26S proteasome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MPE
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26S PROTEASOME IN PRESENCE OF ATP (S2)
Descriptor:26S proteasome regulatory subunit RPN10, Ubiquitin carboxyl-terminal hydrolase RPN11, 26S proteasome regulatory subunit RPN12, ...
Authors:Wehmer, M., Rudack, T., Beck, F., Aufderheide, A., Pfeifer, G., Plitzko, J.M., Foerster, F., Schulten, K., Baumeister, W., Sakata, E.
Deposit date:2016-12-16
Release date:2017-03-08
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural insights into the functional cycle of the ATPase module of the 26S proteasome.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6FVT
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26S PROTEASOME, S1 STATE
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Eisele, M.R., Reed, R.G., Rudack, T., Schweitzer, A., Beck, F., Nagy, I., Pfeifer, G., Plitzko, J.M., Baumeister, W., Tomko, R.J., Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-22
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018
6FVU
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26S PROTEASOME, S2 STATE
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Eisele, M.R., Reed, R.G., Rudack, T., Schweitzer, A., Beck, F., Nagy, I., Pfeifer, G., Plitzko, J.M., Baumeister, W., Tomko, R.J., Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-22
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018
6FVV
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26S PROTEASOME, S3 STATE
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Eisele, M.R., Reed, R.G., Rudack, T., Schweitzer, A., Beck, F., Nagy, I., Pfeifer, G., Plitzko, J.M., Baumeister, W., Tomko, R.J., Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-22
Last modified:2018-10-24
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018
6FVW
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26S PROTEASOME, S4 STATE
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Eisele, M.R., Reed, R.G., Rudack, T., Schweitzer, A., Beck, F., Nagy, I., Pfeifer, G., Plitzko, J.M., Baumeister, W., Tomko, R.J., Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-29
Last modified:2018-11-21
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018
6FVX
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26S PROTEASOME, S5 STATE
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Eisele, M.R., Reed, R.G., Rudack, T., Schweitzer, A., Beck, F., Nagy, I., Pfeifer, G., Plitzko, J.M., Baumeister, W., Tomko, R.J., Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-22
Last modified:2019-02-20
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018
6FVY
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26S PROTEASOME, S6 STATE
Descriptor:Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
Authors:Eisele, M.R., Reed, R.G., Rudack, T., Schweitzer, A., Beck, F., Nagy, I., Pfeifer, G., Plitzko, J.M., Baumeister, W., Tomko, R.J., Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-22
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018
2DOS
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STRUCTURAL BASIS FOR THE RECOGNITION OF LYS48-LINKED POLYUBIQUITIN CHAIN BY THE JOSEPHIN DOMAIN OF ATAXIN-3, A PUTATIVE DEUBIQUITINATING ENZYME
Descriptor:Ataxin-3
Authors:Sumiyoshi, A.
Deposit date:2006-05-03
Release date:2007-05-22
Last modified:2014-12-31
Method:SOLUTION NMR
Cite:Mode of substrate recognition by the Josephin domain of ataxin-3, which has an endo-type deubiquitinase activity.
Febs Lett., 588, 2014
5L4G
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THE HUMAN 26S PROTEASOME AT 3.9 A
Descriptor:Proteasome subunit alpha type-6, Proteasome subunit alpha type-2, Proteasome subunit alpha type-4, ...
Authors:Schweitzer, A., Aufderheide, A., Rudack, T., Beck, F.
Deposit date:2016-05-25
Release date:2016-09-07
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.019 Å)
Cite:Structure of the human 26S proteasome at a resolution of 3.9 angstrom.
Proc.Natl.Acad.Sci.USA, 113, 2016
5L4K
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THE HUMAN 26S PROTEASOME LID
Descriptor:26S proteasome non-ATPase regulatory subunit 4, 26S proteasome non-ATPase regulatory subunit 14, 26S proteasome non-ATPase regulatory subunit 8, ...
Authors:Schweitzer, A., Aufderheide, A., Rudack, T., Beck, F.
Deposit date:2016-05-25
Release date:2016-09-07
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structure of the human 26S proteasome at a resolution of 3.9 angstrom.
Proc.Natl.Acad.Sci.USA, 113, 2016
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