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1KFA
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BU of 1kfa by Molmil
Crystal structure of Fab fragment complexed with gibberellin A4
Descriptor: GIBBERELLIN A4, monoclonal antibody heavy chain, monoclonal antibody light chain
Authors:Murata, T, Fushinobu, S, Nakajima, M, Asami, O, Sassa, T, Wakagi, T, Yamaguchi, I.
Deposit date:2001-11-20
Release date:2002-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the liganded anti-gibberellin A(4) antibody 4-B8(8)/E9 Fab fragment.
Biochem.Biophys.Res.Commun., 293, 2002
1YT6
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BU of 1yt6 by Molmil
NMR structure of peptide SD
Descriptor: peptide SD
Authors:Murata, T, Hemmi, H, Nakamura, S, Shimizu, K, Suzuki, Y, Yamaguchi, I.
Deposit date:2005-02-10
Release date:2005-09-27
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
Febs J., 272, 2005
2BL2
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BU of 2bl2 by Molmil
The membrane rotor of the V-type ATPase from Enterococcus hirae
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, SODIUM ION, UNDECYL-MALTOSIDE, ...
Authors:Murata, T, Yamato, I, Kakinuma, Y, Leslie, A.G.W, Walker, J.E.
Deposit date:2005-02-25
Release date:2005-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Rotor of the Vacuolar-Type Na- ATPase from Enterococcus Hirae
Science, 308, 2005
2CYD
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BU of 2cyd by Molmil
Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, LITHIUM ION, UNDECYL-MALTOSIDE, ...
Authors:Murata, T, Yamato, I, Kakinuma, Y, Shirouzu, M, Walker, J.E, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-06
Release date:2006-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae
To be Published
2DB4
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BU of 2db4 by Molmil
Crystal structure of rotor ring with DCCD of the V- ATPase from Enterococcus hirae
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, DICYCLOHEXYLUREA, SODIUM ION, ...
Authors:Murata, T, Yamato, I, Kakinuma, Y, Shirouzu, M, Walker, J.E, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-15
Release date:2006-12-05
Last modified:2012-05-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase.
Proc.Natl.Acad.Sci.USA, 108, 2011
6IIE
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BU of 6iie by Molmil
Crystal structure of human diacylglycerol kinase alpha EF-hand domains bound to Ca2+
Descriptor: CALCIUM ION, Diacylglycerol kinase alpha, GLYCEROL, ...
Authors:Takahashi, D, Suzuki, K, Sakamoto, T, Iwamoto, T, Murata, T, Sakane, F.
Deposit date:2018-10-04
Release date:2019-02-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.142 Å)
Cite:Crystal structure and calcium-induced conformational changes of diacylglycerol kinase alpha EF-hand domains.
Protein Sci., 28, 2019
8Y6H
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BU of 8y6h by Molmil
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
Descriptor: ATP-dependent translocase ABCB1,mNeonGreen, UIC2 Fab heavy chain, UIC2 Fab light chain, ...
Authors:Hamaguchi-Suzuki, N, Adachi, N, Moriya, T, Kawasaki, M, Suzuki, K, Anzai, N, Senda, T, Murata, T.
Deposit date:2024-02-02
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (2.49 Å)
Cite:Cryo-EM structure of P-glycoprotein bound to triple elacridar inhibitor molecules.
Biochem.Biophys.Res.Commun., 709, 2024
8Y6I
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BU of 8y6i by Molmil
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, ATP-dependent translocase ABCB1,mNeonGreen, CHOLESTEROL, ...
Authors:Hamaguchi-Suzuki, N, Adachi, N, Moriya, T, Kawasaki, M, Suzuki, K, Anzai, N, Senda, T, Murata, T.
Deposit date:2024-02-02
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Cryo-EM structure of P-glycoprotein bound to triple elacridar inhibitor molecules.
Biochem.Biophys.Res.Commun., 709, 2024
8ZYP
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BU of 8zyp by Molmil
Cryo-EM Structure of E-4031-bound hERG Channel
Descriptor: Potassium voltage-gated channel subfamily H member 2, ~{N}-[4-[1-[2-(6-methylpyridin-2-yl)ethyl]piperidin-4-yl]carbonylphenyl]methanesulfonamide
Authors:Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
Deposit date:2024-06-18
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Improved higher resolution Cryo-EM structures reveal the binding modes of hERG Channel Inhibitors
To Be Published
8ZYO
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BU of 8zyo by Molmil
Cryo-EM Structure of astemizole-bound hERG Channel
Descriptor: 1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine, Potassium voltage-gated channel subfamily H member 2
Authors:Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
Deposit date:2024-06-18
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Improved higher resolution Cryo-EM structures reveal the binding modes of hERG Channel Inhibitors
To Be Published
8ZYN
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BU of 8zyn by Molmil
Cryo-EM Structure of inhibitor-free hERG Channel
Descriptor: Potassium voltage-gated channel subfamily H member 2
Authors:Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
Deposit date:2024-06-18
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Improved higher resolution Cryo-EM structures reveal the binding modes of hERG Channel Inhibitors
To Be Published
8ZYQ
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BU of 8zyq by Molmil
Cryo-EM Structure of pimozide-bound hERG Channel
Descriptor: 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one, Potassium voltage-gated channel subfamily H member 2
Authors:Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
Deposit date:2024-06-18
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Improved higher resolution Cryo-EM structures reveal the binding modes of hERG Channel Inhibitors
To Be Published
3O0R
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BU of 3o0r by Molmil
Crystal structure of nitric oxide reductase from Pseudomonas aeruginosa in complex with antibody fragment
Descriptor: CALCIUM ION, FE (III) ION, HEME C, ...
Authors:Hino, T, Matsumoto, Y, Nagano, S, Sugimoto, H, Fukumori, Y, Murata, T, Iwata, S, Shiro, Y.
Deposit date:2010-07-20
Release date:2010-12-29
Last modified:2013-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of biological N2O generation by bacterial nitric oxide reductase
Science, 330, 2010
5KNC
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BU of 5knc by Molmil
Crystal structure of the 3 ADP-bound V1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.015 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KNB
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BU of 5knb by Molmil
Crystal structure of the 2 ADP-bound V1 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.251 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KND
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BU of 5knd by Molmil
Crystal structure of the Pi-bound V1 complex
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Suzuki, K, Mizutani, K, Maruyama, S, Shimono, K, Imai, F.L, Muneyuki, E, Kakinuma, Y, Ishizuka-Katsura, Y, Shirouzu, M, Yokoyama, S, Yamato, I, Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.888 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
6KFQ
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BU of 6kfq by Molmil
Crystal structure of thermophilic rhodopsin from Rubrobacter xylanophilus
Descriptor: RETINAL, Rhodopsin, SULFATE ION, ...
Authors:Suzuki, K, Akiyama, T, Hayashi, T, Yasuda, S, Kanehara, K, Kojima, K, Tanabe, M, Kato, R, Senda, T, Sudo, Y, Kinoshita, M, Murata, T.
Deposit date:2019-07-08
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:How Does a Microbial Rhodopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?
J.Phys.Chem.B, 124, 2020
3VG9
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BU of 3vg9 by Molmil
Crystal structure of human adenosine A2A receptor with an allosteric inverse-agonist antibody at 2.7 A resolution
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Hino, T, Arakawa, T, Iwanari, H, Yurugi-Kobayashi, T, Ikeda-Suno, C, Nakada-Nakura, Y, Kusano-Arai, O, Weyand, S, Shimamura, T, Nomura, N, Cameron, A.D, Kobayashi, T, Hamakubo, T, Iwata, S, Murata, T.
Deposit date:2011-08-04
Release date:2012-02-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody
Nature, 482, 2012
3VGA
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BU of 3vga by Molmil
Crystal structure of human adenosine A2A receptor with an allosteric inverse-agonist antibody at 3.1 A resolution
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a, antibody fab fragment heavy chain, ...
Authors:Hino, T, Arakawa, T, Iwanari, H, Yurugi-Kobayashi, T, Ikeda-Suno, C, Nakada-Nakura, Y, Kusano-Arai, O, Weyand, S, Shimamura, T, Nomura, N, Cameron, A.D, Kobayashi, T, Hamakubo, T, Iwata, S, Murata, T.
Deposit date:2011-08-04
Release date:2012-02-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody
Nature, 482, 2012
5A16
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BU of 5a16 by Molmil
Crystal structure of Fab4201 raised against Human Erythrocyte Anion Exchanger 1
Descriptor: FAB4201 HEAVY CHAIN
Authors:Arakawa, T, Kobayashi-Yugiri, T, Alguel, Y, Weyand, S, Iwanari, H, Hatae, H, Iwata, M, Abe, Y, Hino, T, Ikeda-Suno, C, Kuma, H, Kang, D, Murata, T, Hamakubo, T, Cameron, A, Kobayashi, T, Hamasaki, N, Iwata, S.
Deposit date:2015-04-28
Release date:2015-06-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Anion Exchanger Domain of Human Erythrocyte Band 3
Science, 350, 2015
4YZF
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BU of 4yzf by Molmil
Crystal structure of the anion exchanger domain of human erythrocyte Band 3
Descriptor: 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}, Band 3 anion transport protein, FAB fragment of Immunoglobulin (IgG) molecule
Authors:Alguel, Y, Arakawa, T, Yugiri, T.K, Iwanari, H, Hatae, H, Iwata, M, Abe, Y, Hino, T, Suno, C.I, Kuma, H, Kang, D, Murata, T, Hamakubo, T, Cameron, A.D, Kobayashi, T, Hamasaki, N, Iwata, S.
Deposit date:2015-03-25
Release date:2015-11-04
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the anion exchanger domain of human erythrocyte band 3.
Science, 350, 2015
5AZD
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BU of 5azd by Molmil
Crystal structure of thermophilic rhodopsin.
Descriptor: Bacteriorhodopsin
Authors:Mizutani, K, Hashimoto, N, Tsukamoto, T, Yamashita, K, Yamamoto, M, Sudo, Y, Murata, T.
Deposit date:2015-09-30
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray crystallographic structure of thermophilic rhodopsin: implications for high thermal stability and optogenetic availability.
To Be Published
1YXJ
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BU of 1yxj by Molmil
Crystal structure of human lectin-like oxidized low-density lipoprotein receptor 1 (LOX-1) at low pH
Descriptor: 1,2-ETHANEDIOL, oxidised low density lipoprotein (lectin-like) receptor 1
Authors:Ohki, I, Ishigaki, T, Oyama, T, Matsunaga, S, Xie, Q, Ohnishi-Kameyama, M, Murata, T, Tsuchiya, D, Machida, S, Morikawa, K, Tate, S.
Deposit date:2005-02-22
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
Structure, 13, 2005
3VR2
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BU of 3vr2 by Molmil
Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3]
Descriptor: V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
Authors:Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR4
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BU of 3vr4 by Molmil
Crystal structure of Enterococcus hirae V1-ATPase [eV1]
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.172 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013

 

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