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1ZLB
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BU of 1zlb by Molmil
Crystal structure of catalytically-active phospholipase A2 in the absence of calcium
Descriptor: hypotensive phospholipase A2
Authors:Murakami, M.T, Cintra, A.C, Gabdoulkhakov, A, Genov, N, Betzel, C, Arni, R.K.
Deposit date:2005-05-05
Release date:2006-04-25
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Insights into metal ion binding in phospholipases A(2): ultra high-resolution crystal structures of an acidic phospholipase A(2) in the Ca(2+) free and bound states.
Biochimie, 88, 2006
1ZL7
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BU of 1zl7 by Molmil
Crystal structure of catalytically-active phospholipase A2 with bound calcium
Descriptor: CALCIUM ION, GLYCEROL, hypotensive phospholipase A2
Authors:Murakami, M.T, Cintra, A.C, Gabdoulkhakov, A, Genov, N, Betzel, C, Arni, R.K.
Deposit date:2005-05-05
Release date:2006-04-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into metal ion binding in phospholipases A(2): ultra high-resolution crystal structures of an acidic phospholipase A(2) in the Ca(2+) free and bound states.
Biochimie, 88, 2006
1XX1
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BU of 1xx1 by Molmil
Structural basis for ion-coordination and the catalytic mechanism of sphingomyelinases D
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, SULFATE ION, ...
Authors:Murakami, M.T, Tambourgi, D.V, Arni, R.K.
Deposit date:2004-11-03
Release date:2005-01-18
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases d
J.Biol.Chem., 280, 2005
2H8I
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BU of 2h8i by Molmil
Crystal Structure of the Bothropstoxin-I complexed with polyethylene glycol
Descriptor: DI(HYDROXYETHYL)ETHER, Phospholipase A2 homolog 1
Authors:Murakami, M.T, Arni, R.K.
Deposit date:2006-06-07
Release date:2007-06-19
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Interfacial surface charge and free accessibility to the PLA2-active site-like region are essential requirements for the activity of Lys49 PLA2 homologues
Toxicon, 49, 2007
2F9R
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BU of 2f9r by Molmil
Crystal structure of the inactive state of the Smase I, a sphingomyelinase D from Loxosceles laeta venom
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, Sphingomyelinase D 1
Authors:Murakami, M.T, Gabdoulkhakov, A, Fernandes-Pedrosa, M.F, Betzel, C, Tambourgi, D.V, Arni, R.K.
Deposit date:2005-12-06
Release date:2006-06-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases D.
J.Biol.Chem., 280, 2005
2H8U
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BU of 2h8u by Molmil
Bucain, a cardiotoxin from the Malayan Krait Bungarus candidus
Descriptor: Bucain
Authors:Murakami, M.T, Kini, R.M, Arni, R.K.
Deposit date:2006-06-08
Release date:2007-06-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Bucain
To be Published
2H9E
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BU of 2h9e by Molmil
Crystal Structure of FXa/selectide/NAPC2 ternary complex
Descriptor: ACETATE ION, Anti-coagulant protein C2, Coagulation factor X heavy chain, ...
Authors:Murakami, M.T, Geiger, G, Tulinsky, A, Arni, R.K.
Deposit date:2006-06-09
Release date:2007-02-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intermolecular Interactions and Characterization of the Novel Factor Xa Exosite Involved in Macromolecular Recognition and Inhibition: Crystal Structure of Human Gla-domainless Factor Xa Complexed with the Anticoagulant Protein NAPc2 from the Hematophagous Nematode Ancylostoma caninum.
J.Mol.Biol., 366, 2007
2AIP
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BU of 2aip by Molmil
Crystal structure of native protein C activator from the venom of copperhead snake Agkistrodon contortrix contortrix
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, GLYCEROL, ...
Authors:Murakami, M.T, Arni, R.K.
Deposit date:2005-07-30
Release date:2005-09-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Thrombomodulin-independent Activation of Protein C and Specificity of Hemostatically Active Snake Venom Serine Proteinases: CRYSTAL STRUCTURES OF NATIVE AND INHIBITED AGKISTRODON CONTORTRIX CONTORTRIX PROTEIN C ACTIVATOR.
J.Biol.Chem., 280, 2005
2AIQ
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BU of 2aiq by Molmil
Crystal structure of benzamidine-inhibited protein C activator from the venom of copperhead snake Agkistrodon contortrix contortrix
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, BENZAMIDINE, ...
Authors:Murakami, M.T, Arni, R.K.
Deposit date:2005-07-30
Release date:2005-09-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Thrombomodulin-independent Activation of Protein C and Specificity of Hemostatically Active Snake Venom Serine Proteinases: CRYSTAL STRUCTURES OF NATIVE AND INHIBITED AGKISTRODON CONTORTRIX CONTORTRIX PROTEIN C ACTIVATOR.
J.Biol.Chem., 280, 2005
2PH4
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BU of 2ph4 by Molmil
Crystal structure of a novel Arg49 phospholipase A2 homologue from Zhaoermia mangshanensis venom
Descriptor: DI(HYDROXYETHYL)ETHER, SULFATE ION, Zhaoermiatoxin
Authors:Murakami, M.T, Kuch, U, Mebs, D, Arni, R.K.
Deposit date:2007-04-10
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of a novel myotoxic Arg49 phospholipase A(2) homolog (zhaoermiatoxin) from Zhaoermia mangshanensis snake venom: Insights into Arg49 coordination and the role of Lys122 in the polarization of the C-terminus.
Toxicon, 51, 2008
1XXN
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BU of 1xxn by Molmil
Crystal structure of a mesophilic xylanase A from Bacillus subtilis 1A1
Descriptor: Endo-1,4-beta-xylanase A, S,R MESO-TARTARIC ACID
Authors:Murakami, M.T, Ruller, R, Ward, R.J, Arni, R.K.
Deposit date:2004-11-07
Release date:2005-10-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Correlation of temperature induced conformation change with optimum catalytic activity in the recombinant G/11 xylanase A from Bacillus subtilis strain 168 (1A1).
Febs Lett., 579, 2005
1Y4L
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BU of 1y4l by Molmil
Crystal structure of Bothrops asper myotoxin II complexed with the anti-trypanosomal drug suramin
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID, ISOPROPYL ALCOHOL, ...
Authors:Murakami, M.T, Arruda, E.Z, Melo, P.A, Martinez, A.B, Calil-Elias, S, Tomaz, M.A, Lomonte, B, Gutierrez, J.M, Arni, R.K.
Deposit date:2004-12-01
Release date:2005-06-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Inhibition of Myotoxic Activity of Bothrops asper Myotoxin II by the Anti-trypanosomal Drug Suramin.
J.Mol.Biol., 350, 2005
1UMR
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BU of 1umr by Molmil
Crystal structure of the platelet activator convulxin, a disulfide linked a4b4 cyclic tetramer from the venom of Crotalus durissus terrificus
Descriptor: CONVULXIN ALPHA, CONVULXIN BETA
Authors:Murakami, M.T, Zela, S.P, Gava, L.M, Michelan-Duarte, S, Cintra, A.C.O, Arni, R.K.
Deposit date:2003-08-28
Release date:2003-11-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of the Platelet Activator Convulxin, a Disulfide Linked A4B4 Cyclic Tetramer from the Venom of Crotalus Durissus Terrificus
Biochem.Biophys.Res.Commun., 310, 2003
4E2B
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BU of 4e2b by Molmil
High resolution crystal structure of the old yellow enzyme from Trypanosoma cruzi
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
Authors:Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C.
Deposit date:2012-03-08
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.269 Å)
Cite:High resolution crystal structure and in solution studies of the old yellow enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
4E2D
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BU of 4e2d by Molmil
Structure of the old yellow enzyme from Trypanosoma cruzi
Descriptor: DIMETHYL SULFOXIDE, FLAVIN MONONUCLEOTIDE, Old Yellow Protein
Authors:Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C.
Deposit date:2012-03-08
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:High resolution crystal structure and in solution studies of the Old Yellow Enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
2AOZ
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BU of 2aoz by Molmil
Crystal structure of the myotoxin-II from Atropoides nummifer venom
Descriptor: Phospholipase A2 homolog, SULFATE ION
Authors:Melo, C.C, Murakami, M.T, Angulo, Y, Lomonte, B, Arni, R.K.
Deposit date:2005-08-15
Release date:2006-07-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structure of myotoxin II, a catalytically inactive Lys49 phospholipase A2 homologue from Atropoides nummifer venom.
Acta Crystallogr.,Sect.F, 62, 2006
1UMV
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BU of 1umv by Molmil
Crystal structure of an acidic, non-myotoxic phospholipase A2 from the venom of Bothrops jararacussu
Descriptor: CALCIUM ION, HYPOTENSIVE PHOSPHOLIPASE A2
Authors:Murakami, M.T, Watanabe, L, Cintra, A.C.O, Arni, R.K.
Deposit date:2003-08-28
Release date:2003-09-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystal Structure of an Acidic Platelet Aggregation Inhibitor and Hypotensive Phospholipase A(2) in the Monomeric and Dimeric States: Insights Into its Oligomeric State
Biochem.Biophys.Res.Commun., 323, 2004
4M1R
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BU of 4m1r by Molmil
Structure of a novel cellulase 5 from a sugarcane soil metagenomic library
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cellulase 5
Authors:Paiva, J.H, Alvarez, T.M, Cairo, J.P, Paixao, D.A, Almeida, R.A, Tonoli, C.C.C, Ruiz, D.M, Ruller, R, Santos, C.R, Squina, F.M, Murakami, M.T.
Deposit date:2013-08-03
Release date:2014-02-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and function of a novel cellulase 5 from sugarcane soil metagenome.
Plos One, 8, 2013
4D98
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BU of 4d98 by Molmil
Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in space group H32 at pH 7.5
Descriptor: CHLORIDE ION, GLYCEROL, Purine nucleoside phosphorylase deoD-type, ...
Authors:Santos, C.R, Meza, A.N, Martins, N.H, Giuseppe, P.O, Murakami, M.T.
Deposit date:2012-01-11
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases.
Plos One, 7, 2012
4D9H
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BU of 4d9h by Molmil
Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in complex with adenosine
Descriptor: ADENOSINE, Purine nucleoside phosphorylase deoD-type
Authors:Giuseppe, P.O, Martins, N.H, Meza, A.N, Murakami, M.T.
Deposit date:2012-01-11
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases.
Plos One, 7, 2012
4DA0
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BU of 4da0 by Molmil
Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in complex with 2'-deoxyguanosine
Descriptor: 2'-DEOXY-GUANOSINE, CHLORIDE ION, Purine nucleoside phosphorylase deoD-type
Authors:Martins, N.H, Giuseppe, P.O, Meza, A.N, Murakami, M.T.
Deposit date:2012-01-12
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases.
Plos One, 7, 2012
3KVE
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BU of 3kve by Molmil
Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase, ...
Authors:Gergiova, D, Murakami, M.T, Perbandt, M, Arni, R.K, Betzel, C.
Deposit date:2009-11-30
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site
To be Published
2KQ5
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Solution NMR structure of a section of the repeat domain of the type III effector protein PthA
Descriptor: Avirulence protein
Authors:Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C.
Deposit date:2009-10-28
Release date:2010-09-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions
To be Published
2L8A
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BU of 2l8a by Molmil
Structure of a novel CBM3 lacking the calcium-binding site
Descriptor: Endoglucanase
Authors:Paiva, J.H, Meza, A.N, Sforca, M.L, Navarro, R.Z, Neves, J.L, Santos, C.R, Murakami, M.T, Zeri, A.C.
Deposit date:2011-01-07
Release date:2011-12-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168.
Biochem.J., 441, 2012
4W8A
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Crystal structure of XEG5B, a GH5 xyloglucan-specific beta-1,4-glucanase from ruminal metagenomic library, in the native form
Descriptor: Exo-xyloglucanase, GLYCEROL, SULFATE ION
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015

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