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1VTJ
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BU of 1vtj by Molmil
MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 1
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), NETROPSIN
Authors:Coll, M, Aymami, J, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J.
Deposit date:1999-09-14
Release date:2011-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Structure of the Netropsin-d(CGCGATATCGCG) Complex: DNA Conformation in an Alternating AT Segment
Biochemistry, 28, 1989
1DNE
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BU of 1dne by Molmil
MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 2
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), NETROPSIN
Authors:Coll, M, Aymami, J, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J.
Deposit date:1988-09-14
Release date:1989-01-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular structure of the netropsin-d(CGCGATATCGCG) complex: DNA conformation in an alternating AT segment.
Biochemistry, 28, 1989
1VTY
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BU of 1vty by Molmil
Crystal structure of a Z-DNA fragment containing thymine/2-aminoadenine base pairs
Descriptor: AMINO GROUP, DNA (5'-D(*CP*(NH2)AP*CP*GP*TP*G)-3'), MAGNESIUM ION
Authors:Coll, M, Wang, A.H.-J, Van Der Marel, G.A, Van Boom, J.H, Rich, A.
Deposit date:1988-08-18
Release date:2011-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of a Z-DNA fragment containing thymine/2-aminoadenine base pairs.
J. Biomol. Struct. Dyn., 4, 1986
2DND
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BU of 2dnd by Molmil
A BIFURCATED HYDROGEN-BONDED CONFORMATION IN THE D(A.T) BASE PAIRS OF THE DNA DODECAMER D(CGCAAATTTGCG) AND ITS COMPLEX WITH DISTAMYCIN
Descriptor: DISTAMYCIN A, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3')
Authors:Coll, M, Frederick, C.A, Wang, A.H.-J, Rich, A.
Deposit date:1988-08-29
Release date:1989-01-09
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin.
Proc.Natl.Acad.Sci.USA, 84, 1987
1DNF
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BU of 1dnf by Molmil
EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG)
Descriptor: DNA (5'-D(*CP*GP*CP*GP*(UFP)P*G)-3'), MAGNESIUM ION
Authors:Coll, M, Saal, D, Frederick, C.A, Aymami, J, Rich, A, Wang, A.H.-J.
Deposit date:1988-12-12
Release date:1990-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Effects of 5-fluorouracil/guanine wobble base pairs in Z-DNA: molecular and crystal structure of d(CGCGFG).
Nucleic Acids Res., 17, 1989
1H6F
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BU of 1h6f by Molmil
Human TBX3, a transcription factor responsible for ulnar-mammary syndrome, bound to a palindromic DNA site
Descriptor: 5'-D(*TP*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP* AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*T)-3', MAGNESIUM ION, T-BOX TRANSCRIPTION FACTOR TBX3
Authors:Coll, M, Muller, C.W.
Deposit date:2001-06-13
Release date:2002-04-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the DNA-Bound T-Box Domain of Human Tbx3, a Transcription Factor Responsible for Ulnar- Mammary Syndrome
Structure, 10, 2002
4CVQ
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BU of 4cvq by Molmil
CRYSTAL STRUCTURE OF AN AMINOTRANSFERASE FROM ESCHERICHIA COLI AT 2. 11 ANGSTROEM RESOLUTION
Descriptor: ACETATE ION, GLUTAMATE-PYRUVATE AMINOTRANSFERASE ALAA, GLYCEROL, ...
Authors:Penya-Soler, E, Fernandez, F.J, Lopez-Estepa, M, Garces, F, Richardson, A.J, Rudd, K.E, Coll, M, Vega, M.C.
Deposit date:2014-03-28
Release date:2014-07-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural analysis and mutant growth properties reveal distinctive enzymatic and cellular roles for the three major L-alanine transaminases of Escherichia coli.
PLoS ONE, 9, 2014
1QX0
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BU of 1qx0 by Molmil
CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND STRUCTURE
Descriptor: DNA OLIGONUCLEOTIDE, SULFATE ION, ZINC ION, ...
Authors:Guasch, A, Lucas, M, Moncalian, G, Cabezas, M, Prez-Luque, R, Gomis-Rth, F.X, de la Cruz, F, Coll, M.
Deposit date:2003-09-04
Release date:2003-11-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:RECOGNITION AND PROCESSING OF THE ORIGIN OF TRANSFER DNA BY CONJUGATIVE RELAXASE TRWC
Nat.Struct.Biol., 10, 2003
4LVK
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BU of 4lvk by Molmil
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6
Descriptor: ACTTTAT oligonucleotide, ATAAAGTATAGTGTGpo oligonucleotide, MANGANESE (II) ION, ...
Authors:Pluta, R, Boer, D.R, Coll, M.
Deposit date:2013-07-26
Release date:2014-09-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3L0O
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BU of 3l0o by Molmil
Structure of RNA-free Rho transcription termination factor from Thermotoga maritima
Descriptor: SODIUM ION, SULFATE ION, Transcription termination factor rho, ...
Authors:Canals, A, Uson, I, Coll, M.
Deposit date:2009-12-10
Release date:2010-05-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Structure of RNA-Free Rho Termination Factor Indicates a Dynamic Mechanism of Transcript Capture
J.Mol.Biol., 400, 2010
6EY7
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BU of 6ey7 by Molmil
Human cytomegalovirus terminase nuclease domain, Mn soaked, inhibitor bound
Descriptor: 4-[(4-fluorophenyl)methyl-methyl-amino]-2,4-bis(oxidanylidene)butanoic acid, CHLORIDE ION, MANGANESE (II) ION, ...
Authors:Bongarzone, S, Nadal, M, Kaczmarska, Z, Machon, C, Alvarez, M, Albericio, F, Coll, M.
Deposit date:2017-11-10
Release date:2018-10-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-Driven Discovery of alpha , gamma-Diketoacid Inhibitors Against UL89 Herpesvirus Terminase.
Acs Omega, 3, 2018
1QMU
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BU of 1qmu by Molmil
Duck carboxypeptidase D domain II
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CARBOXYPEPTIDASE GP180 RESIDUES 503-882, SULFATE ION, ...
Authors:Gomis-Rueth, F.X, Coll, M, Aviles, F.X, Vendrell, J, Fricker, L.D.
Deposit date:1999-10-06
Release date:2000-10-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Avian Carboxypeptidase D Domain II : A Prototype for the Regulatory Metallocarboxypeptidase Subfamily
Embo J., 18, 1999
4LDV
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BU of 4ldv by Molmil
Crystal structure of the DNA binding domain of A. thailana auxin response factor 1
Descriptor: Auxin response factor 1, CHLORIDE ION, FORMIC ACID, ...
Authors:boer, D.R, Freire-Rios, A, van den Berg, W.M.A, Weijers, D, Coll, M.
Deposit date:2013-06-25
Release date:2014-02-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors.
Cell(Cambridge,Mass.), 156, 2014
1HEY
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BU of 1hey by Molmil
INVESTIGATING THE STRUCTURAL DETERMINANTS OF THE P21-LIKE TRIPHOSPHATE AND MG2+ BINDING SITE
Descriptor: CHEY
Authors:Bellsolell, L, Coll, M.
Deposit date:1995-04-07
Release date:1995-07-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Investigating the structural determinants of the p21-like triphosphate and Mg2+ binding site.
J.Mol.Biol., 249, 1995
1H8L
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BU of 1h8l by Molmil
Duck Carboxypeptidase D Domain II in complex with GEMSA
Descriptor: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gomis-Rueth, F.X, Coll, M, Aviles, F.X, Vendrell, J, Fricker, L.D.
Deposit date:2001-02-09
Release date:2002-02-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of the inhibitor-complexed carboxypeptidase D domain II and the modeling of regulatory carboxypeptidases.
J. Biol. Chem., 276, 2001
4LDX
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BU of 4ldx by Molmil
Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 1 (ARF1) in complex with protomor-like sequence ER7
Descriptor: Auxin response factor 1, ER7, forward sequence, ...
Authors:Boer, D.R, Freire-Rios, A, van den Berg, W.M.A, Weijers, D, Coll, M.
Deposit date:2013-06-25
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors.
Cell(Cambridge,Mass.), 156, 2014
1GTI
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BU of 1gti by Molmil
MODIFIED GLUTATHIONE S-TRANSFERASE (PI) COMPLEXED WITH S (P-NITROBENZYL)GLUTATHIONE
Descriptor: GLUTATHIONE S-TRANSFERASE, S-(P-NITROBENZYL)GLUTATHIONE
Authors:Vega, M.C, Coll, M.
Deposit date:1998-01-09
Release date:1999-03-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:The three-dimensional structure of Cys-47-modified mouse liver glutathione S-transferase P1-1. Carboxymethylation dramatically decreases the affinity for glutathione and is associated with a loss of electron density in the alphaB-310B region.
J.Biol.Chem., 273, 1998
1H8X
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BU of 1h8x by Molmil
Domain-swapped Dimer of a Human Pancreatic Ribonuclease Variant
Descriptor: RIBONUCLEASE 1
Authors:Canals, A, Pous, J, Guasch, A, Benito, A, Ribo, M, Vilanova, M, Coll, M.
Deposit date:2001-02-16
Release date:2002-02-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Structure of an Engineered Domain-Swapped Ribonuclease Dimer and its Implications for the Evolution of Proteins Toward Oligomerization
Structure, 9, 2001
7P35
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BU of 7p35 by Molmil
Structure of the SARS-CoV-2 3CL protease in complex with rupintrivir
Descriptor: 3C-like proteinase, 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER
Authors:Fabrega-Ferrer, M, Perez-Saavedra, J, Herrera-Morande, A, Coll, M.
Deposit date:2021-07-07
Release date:2021-07-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.256 Å)
Cite:Structure and inhibition of SARS-CoV-1 and SARS-CoV-2 main proteases by oral antiviral compound AG7404.
Antiviral Res., 208, 2022
1GXQ
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BU of 1gxq by Molmil
Crystal structure of the PhoB effector domain
Descriptor: PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB
Authors:Blanco, A.G, Sola, M, Gomis-Ruth, F.X, Coll, M.
Deposit date:2002-04-08
Release date:2002-04-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tandem DNA Recognition by Two-Component Signal Transduction Transcriptional Activator Phob
Structure, 10, 2002
6TJP
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BU of 6tjp by Molmil
Crystal structure of T7 bacteriophage portal protein, 13mer, closed valve - P212121
Descriptor: Portal protein
Authors:Fabrega-Ferrer, M, Cuervo, A, Fernandez, F.J, Machon, C, Perez-Luque, R, Pous, J, Vega, M.C, Carrascosa, J.L, Coll, M.
Deposit date:2019-11-26
Release date:2020-12-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.74 Å)
Cite:Using a partial atomic model from medium-resolution cryo-EM to solve a large crystal structure.
Acta Crystallogr D Struct Biol, 77, 2021
3FX8
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Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate')
Descriptor: (5'-D(*CP*GP*TP*AP*CP*G)-3', 4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}, FE (II) ION
Authors:Boer, D.R, Uson, I, Coll, M.
Deposit date:2009-01-20
Release date:2010-03-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders.
Angew.Chem.Int.Ed.Engl., 49, 2010
1B01
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TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX
Descriptor: DNA (5'-D(*CP*CP*CP*GP*TP*GP*CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*GP*CP*AP*TP*TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*G)-3'), TRANSCRIPTIONAL REPRESSOR COPG
Authors:Gomis-Rueth, F.X, Sola, M, Acebo, P, Parraga, A, Guasch, A, Eritja, R, Gonzalez, A, Espinosa, M, del Solar, G, Coll, M.
Deposit date:1999-11-15
Release date:1999-11-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator.
EMBO J., 17, 1998
1AYE
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BU of 1aye by Molmil
HUMAN PROCARBOXYPEPTIDASE A2
Descriptor: PROCARBOXYPEPTIDASE A2, ZINC ION
Authors:Garcia-Saez, I, Reverte, D, Vendrell, J, Aviles, F.X, Coll, M.
Deposit date:1997-11-03
Release date:1999-01-13
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The three-dimensional structure of human procarboxypeptidase A2. Deciphering the basis of the inhibition, activation and intrinsic activity of the zymogen.
EMBO J., 16, 1997
1HE2
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Human biliverdin IX beta reductase: NADP/biliverdin IX alpha ternary complex
Descriptor: BILIVERDIN IX BETA REDUCTASE, BILIVERDINE IX ALPHA, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Pereira, P.J.B, Macedo-Ribeiro, S, Parraga, A, Perez-Luque, R, Cunningham, O, Darcy, K, Mantle, T.J, Coll, M.
Deposit date:2000-11-18
Release date:2001-02-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure of Human Biliverdin Ix Beta Reductase, an Early Fetal Bilirubin Ix Producing Enzyme
Nat.Struct.Biol., 8, 2001

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