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4RCR
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BU of 4rcr by Molmil
STRUCTURE OF THE REACTION CENTER FROM RHODOBACTER SPHAEROIDES R-26 AND 2.4.1: PROTEIN-COFACTOR (BACTERIOCHLOROPHYLL, BACTERIOPHEOPHYTIN, AND CAROTENOID) INTERACTIONS
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ...
Authors:Komiya, H, Yeates, T.O, Chirino, A.J, Rees, D.C, Allen, J.P, Feher, G.
Deposit date:1991-09-09
Release date:1993-10-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the reaction center from Rhodobacter sphaeroides R-26 and 2.4.1: protein-cofactor (bacteriochlorophyll, bacteriopheophytin, and carotenoid) interactions.
Proc.Natl.Acad.Sci.USA, 85, 1988
4P2S
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BU of 4p2s by Molmil
Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Putative propanediol utilization protein PduA, ...
Authors:Sinha, S, Cheng, S, Sung, Y.W, McNamara, D.E, Sawaya, M.R, Yeates, T.O, Bobik, T.A.
Deposit date:2014-03-03
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment.
J.Mol.Biol., 426, 2014
2RIH
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BU of 2rih by Molmil
CBS domain protein PAE2072 from Pyrobaculum aerophilum
Descriptor: ACETIC ACID, Conserved protein with 2 CBS domains, SULFATE ION
Authors:Lee, T.M, King, N.P, Sawaya, M.R, Cascio, D, Yeates, T.O.
Deposit date:2007-10-10
Release date:2008-06-17
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures and Functional Implications of an AMP-Binding Cystathionine beta-Synthase Domain Protein from a Hyperthermophilic Archaeon
J.Mol.Biol., 380, 2008
3VCD
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BU of 3vcd by Molmil
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group R32
Descriptor: CHLORIDE ION, Propanediol utilization polyhedral body protein PduT, SULFATE ION
Authors:Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2012-01-03
Release date:2012-06-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
3CJC
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BU of 3cjc by Molmil
Actin dimer cross-linked by V. cholerae MARTX toxin and complexed with DNase I and Gelsolin-segment 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Sawaya, M.R, Kudryashov, D.S, Pashkov, I, Reisler, E, Yeates, T.O.
Deposit date:2008-03-12
Release date:2008-03-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.
Proc.Natl.Acad.Sci.USA, 105, 2008
3CIM
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BU of 3cim by Molmil
Carboxysome shell protein, CcmK2 C-terminal deletion mutant
Descriptor: Carbon dioxide-concentrating mechanism protein ccmK homolog 2, GLYCEROL, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2008-03-11
Release date:2009-02-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Insights from multiple structures of the shell proteins from the beta-carboxysome.
Protein Sci., 18, 2009
5IM5
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BU of 5im5 by Molmil
Crystal structure of designed two-component self-assembling icosahedral cage I53-40
Descriptor: Designed Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase, Designed Riboflavin synthase
Authors:Liu, Y.A, Cascio, D, Sawaya, M.R, Bale, J.B, Collazo, M.J, Thomas, C, Sheffler, W, King, N.P, Baker, D, Yeates, T.O.
Deposit date:2016-03-05
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.699 Å)
Cite:Accurate design of megadalton-scale two-component icosahedral protein complexes.
Science, 353, 2016
5UI2
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BU of 5ui2 by Molmil
CRYSTAL STRUCTURE OF ORANGE CAROTENOID PROTEIN
Descriptor: (3'R)-3'-hydroxy-beta,beta-caroten-4-one, CHLORIDE ION, Orange carotenoid-binding protein, ...
Authors:KERFELD, C.A, SAWAYA, M.R, VISHNU, B, KROGMANN, D, YEATES, T.O.
Deposit date:2017-01-12
Release date:2017-01-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of a cyanobacterial water-soluble carotenoid binding protein.
Structure, 11, 2003
3VDX
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BU of 3vdx by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains
Descriptor: Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1
Authors:Lai, Y.-T, Cascio, D, Yeates, T.O.
Deposit date:2012-01-06
Release date:2012-06-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:Structure of a 16-nm cage designed by using protein oligomers.
Science, 336, 2012
3WIS
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BU of 3wis by Molmil
Crystal structure of Burkholderia xenovorans DmrB in complex with FMN: A Cubic Protein Cage for Redox Transfer
Descriptor: FLAVIN MONONUCLEOTIDE, Putative dihydromethanopterin reductase (AfpA), SULFATE ION
Authors:Bobik, T.A, Cascio, D, Jorda, J, McNamara, D.E, Bustos, C, Wang, T.C, Rasche, M.E, Yeates, T.O.
Deposit date:2013-09-25
Release date:2014-02-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer
J.Biol.Chem., 289, 2014
8UJA
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BU of 8uja by Molmil
T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks
Descriptor: T33-fn10: engineered DrsE like sulfur reductase, T33-fn10: engineered enoyl-CoA hydratase/isomerase
Authors:Meador, K, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-10-11
Release date:2024-03-06
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (6 Å)
Cite:A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 32, 2024
2G13
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BU of 2g13 by Molmil
CsoS1A with sulfate ion
Descriptor: Major carboxysome shell protein 1A, SULFATE ION
Authors:Tsai, Y, Sawaya, M.R, Cannon, G.C, Williams, E.B, Kerfeld, C.A, Yeates, T.O.
Deposit date:2006-02-13
Release date:2007-02-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structural Analysis of CsoS1A and the Protein Shell of the Halothiobacillus neapolitanus Carboxysome.
Plos Biol., 5, 2007
2EWH
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BU of 2ewh by Molmil
Carboxysome protein CsoS1A from Halothiobacillus neapolitanus
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Major carboxysome shell protein 1A
Authors:Tsai, Y, Sawaya, M.R, Kerfeld, C.A, Yeates, T.O.
Deposit date:2005-11-03
Release date:2006-11-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Analysis of CsoS1A and the Protein Shell of the Halothiobacillus neapolitanus Carboxysome.
Plos Biol., 5, 2007
2Z9H
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BU of 2z9h by Molmil
Ethanolamine utilization protein, EutN
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CHLORIDE ION, Ethanolamine utilization protein eutN
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2007-09-20
Release date:2007-10-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:The crystal structure of ethanolamine utilization protein EutN from E. coli
To be Published
6NHT
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BU of 6nht by Molmil
Single particle reconstruction of the symmetric core an engineered protein scaffold
Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B
Authors:Liu, Y, Huynh, D, Yeates, T.O.
Deposit date:2018-12-23
Release date:2019-05-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold.
Nat Commun, 10, 2019
6NHV
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BU of 6nhv by Molmil
Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold
Descriptor: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP
Authors:Liu, Y, Huynh, D, Yeates, T.O.
Deposit date:2018-12-24
Release date:2019-05-08
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold.
Nat Commun, 10, 2019
3BN4
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BU of 3bn4 by Molmil
Carboxysome Subunit, CcmK1
Descriptor: Carbon dioxide-concentrating mechanism protein ccmK homolog 1, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2007-12-13
Release date:2008-03-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Atomic-level models of the bacterial carboxysome shell.
Science, 319, 2008
3CGI
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BU of 3cgi by Molmil
Crystal structure of the PduU shell protein from the Pdu microcompartment
Descriptor: Propanediol utilization protein pduU
Authors:Crowley, C.S, Sawaya, M.R, Yeates, T.O.
Deposit date:2008-03-05
Release date:2008-09-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the PduU Shell Protein from the Pdu Microcompartment of Salmonella
Structure, 16, 2008
3CJB
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BU of 3cjb by Molmil
Actin dimer cross-linked by V. cholerae MARTX toxin and complexed with Gelsolin-segment 1
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Sawaya, M.R, Kudryashov, D.S, Pashkov, I, Reisler, E, Yeates, T.O.
Deposit date:2008-03-12
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.
Proc.Natl.Acad.Sci.USA, 105, 2008
4ZSV
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BU of 4zsv by Molmil
Structure of a fusion protein with a helix linker, 2ARH-3-3KAW-1.0
Descriptor: Uncharacterized protein
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2015-05-14
Release date:2015-08-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.
Protein Eng.Des.Sel., 28, 2015
4ZSZ
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BU of 4zsz by Molmil
Structure of a fusion protein with a helix linker, 2ARH-3-3KAW-3.0
Descriptor: Uncharacterized Fusion Protein
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2015-05-14
Release date:2015-08-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.251 Å)
Cite:On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.
Protein Eng.Des.Sel., 28, 2015
4ZSX
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BU of 4zsx by Molmil
Structure of a fusion protein with a helix linker, 2ARH-3-3KAW-2.0
Descriptor: PHOSPHATE ION, Uncharacterized Fusion Protein
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2015-05-14
Release date:2015-08-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.
Protein Eng.Des.Sel., 28, 2015
4YJ3
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BU of 4yj3 by Molmil
Crystal structure of tubulin bound to compound 2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-(4-ethoxyphenyl)-3-(2-methoxyphenyl)-7H-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazine, CALCIUM ION, ...
Authors:McNamara, D.E, Torres, J.Z, Yeates, T.O.
Deposit date:2015-03-03
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.75 Å)
Cite:Structures of potent anticancer compounds bound to tubulin.
Protein Sci., 24, 2015
4YJ2
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BU of 4yj2 by Molmil
Crystal structure of tubulin bound to MI-181
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5,6-dimethyl-2-[(E)-2-(pyridin-3-yl)ethenyl]-1,3-benzothiazole, CALCIUM ION, ...
Authors:McNamara, D.E, Torres, J.Z, Yeates, T.O.
Deposit date:2015-03-03
Release date:2015-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of potent anticancer compounds bound to tubulin.
Protein Sci., 24, 2015
8TFS
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BU of 8tfs by Molmil
Crystal structure of the Rhodanese-like domain of Vretifemale_1082 from Volvox reticuliferus
Descriptor: Rhodanese domain-containing protein
Authors:Arbing, M.A, Jonikas, M, Yeates, T.O.
Deposit date:2023-07-11
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the Rhodanese-like domain of Vretifemale_1082 from Volvox reticuliferus
To Be Published

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