PDB: 1416 resultsInfo pagesStatus searchChemie searchBIRD

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4GU2	Crystal structure of ubiquitin from Entamoeba histolytica to 1.35 Angstrom Descriptor: Ubiquitin Authors: Bosch, D.E, Siderovski, D.P. Deposit date: 2012-08-29 Release date: 2012-12-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. J.Biol.Chem., 288, 2013
4HCN	Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, PHOSPHATE ION, ... Authors: Yao, Q, Cui, J, Zhu, Y, Shao, F. Deposit date: 2012-09-30 Release date: 2012-11-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
4HCP	crystal structure of Burkholderia pseudomallei effector protein chbp in complex with nedd8 Descriptor: GLYCEROL, NEDD8, Putative ATP/GTP binding protein, ... Authors: Yao, Q, Shao, F. Deposit date: 2012-10-01 Release date: 2012-11-21 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
4HJK	U7Ub7 Disulfide variant Descriptor: PHOSPHATE ION, Ubiquitin Authors: Murray, J.M, Rouge, L. Deposit date: 2012-10-12 Release date: 2012-11-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.784 Å) Cite: Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization to be published
4HK2	U7Ub25.2540 Descriptor: SULFATE ION, Ubiquitin Authors: Murray, J.M, Rouge, L. Deposit date: 2012-10-14 Release date: 2012-11-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization to be published
4HXD	Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases Descriptor: 1.7.6 3-bromanylpropan-1-amine, Polyubiquitin-C, RNA-directed RNA polymerase L, ... Authors: Capodagli, G.C, Pegan, S.D. Deposit date: 2012-11-09 Release date: 2013-02-13 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Diversity of Ubiquitin and ISG15 Specificity among Nairoviruses' Viral Ovarian Tumor Domain Proteases. J.Virol., 87, 2013
4I6L	Crystal structure of OTUB1 in complex with ubiquitin variant Descriptor: Ubiquitin, Ubiquitin thioesterase OTUB1 Authors: Juang, Y.C, Sicheri, F. Deposit date: 2012-11-29 Release date: 2013-01-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.488 Å) Cite: A strategy for modulation of enzymes in the ubiquitin system. Science, 339, 2013
4I6N	Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, METHYL 4-AMINOBUTANOATE, SODIUM ION, ... Authors: Morrow, M.E, Ronau, J.A, White, R.R, Artavanis-Tsakonas, K, Das, C. Deposit date: 2012-11-29 Release date: 2013-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C-Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
4IG7	Crystal structure of Trichinella spiralis UCH37 bound to Ubiquitin vinyl methyl ester Descriptor: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin C-terminal hydrolase 37 Authors: Das, C, Kim, M.I, Morrow, M.E. Deposit date: 2012-12-16 Release date: 2013-05-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.996 Å) Cite: Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C‑Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity. Biochemistry, 52, 2013
4II2	Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Olsen, S.K, Lima, C.D. Deposit date: 2012-12-19 Release date: 2013-02-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell, 49, 2013
4II3	Crystal structure of S. pombe Ubiquitin activating enzyme 1 (Uba1) in complex with ubiquitin and ATP/Mg Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... Authors: Olsen, S.K, Lima, C.D. Deposit date: 2012-12-19 Release date: 2013-02-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer. Mol.Cell, 49, 2013
4IUM	Equine arteritis virus papain-like protease 2 (PLP2) covalently bound to ubiquitin Descriptor: GLYCEROL, Ubiquitin, ZINC ION, ... Authors: Bailey-Elkin, B.A, James, T.W, Mark, B.L. Deposit date: 2013-01-21 Release date: 2013-02-13 Last modified: 2013-03-20 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Deubiquitinase function of arterivirus papain-like protease 2 suppresses the innate immune response in infected host cells. Proc.Natl.Acad.Sci.USA, 110, 2013
4JGH	Structure of the SOCS2-Elongin BC complex bound to an N-terminal fragment of Cullin5 Descriptor: Cullin-5, Suppressor of cytokine signaling 2, Transcription elongation factor B polypeptide 1, ... Authors: Kim, Y.K, Kwak, M.J, Ku, B, Suh, H.Y, Joo, K, Lee, J, Jung, J.U, Oh, B.H. Deposit date: 2013-03-01 Release date: 2013-08-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of intersubunit recognition in elongin BC-cullin 5-SOCS box ubiquitin-protein ligase complexes. Acta Crystallogr.,Sect.D, 69, 2013
4JIO	Bro1 V domain and ubiquitin Descriptor: BRO1, Ubiquitin Authors: Pashkova, N, Gakhar, L, Piper, R.C. Deposit date: 2013-03-06 Release date: 2013-06-19 Last modified: 2013-07-10 Method: X-RAY DIFFRACTION (3.6 Å) Cite: The yeast alix homolog bro1 functions as a ubiquitin receptor for protein sorting into multivesicular endosomes. Dev.Cell, 25, 2013
4JQW	Crystal Structure of a Complex of NOD1 CARD and Ubiquitin Descriptor: Nucleotide-binding oligomerization domain-containing protein 1, PHOSPHATE ION, Polyubiquitin-C Authors: Ver Heul, A.M, Gakhar, L, Piper, R.C, Ramaswamy, S. Deposit date: 2013-03-20 Release date: 2014-03-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of a complex of NOD1 CARD and ubiquitin Plos One, 9, 2014
4K1R	Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin Descriptor: 1,2-ETHANEDIOL, AMSH-like protease sst2, CHLORIDE ION, ... Authors: Shrestha, R.K, Das, C. Deposit date: 2013-04-05 Release date: 2014-04-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.632 Å) Cite: Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry, 53, 2014
4K7S	Crystal structure of Zn2-hUb (human ubiquitin) adduct from a solution 35 mM zinc acetate/1.3 mM hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... Authors: Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. Deposit date: 2013-04-17 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K7U	Crystal structure of Zn2.3-hUb (human ubiquitin) adduct from a solution 70 mM zinc acetate/1.3 mM hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. Deposit date: 2013-04-17 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K7W	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 100 mM zinc acetate/1.3 mM hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... Authors: Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. Deposit date: 2013-04-17 Release date: 2013-05-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
4K95	Crystal Structure of Parkin Descriptor: E3 ubiquitin-protein ligase parkin, ZINC ION Authors: Seirafi, M, Menade, M, Sauve, V, Kozlov, G, Trempe, J.-F, Nagar, B, Gehring, K. Deposit date: 2013-04-19 Release date: 2013-05-15 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (6.499 Å) Cite: Structure of parkin reveals mechanisms for ubiquitin ligase activation. Science, 340, 2013
4KSK	Gumby/Fam105B in complex with ubiquitin Descriptor: Polyubiquitin-C, Protein FAM105B, SULFATE ION Authors: Ceccarelli, D.F, Juang, Y.-C, Sicheri, F. Deposit date: 2013-05-17 Release date: 2013-06-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature, 498, 2013
4KSL	Gumby/Fam105B in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, Protein FAM105B Authors: Juang, Y.-C, Ceccarelli, D.F, Sicheri, F. Deposit date: 2013-05-17 Release date: 2013-06-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.83 Å) Cite: The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature, 498, 2013
4KZX	Rabbit 40S ribosomal subunit in complex with eIF1. Descriptor: 18S ribosomal RNA, 40S Ribosomal protein S9, 40S ribosomal protein RACK1, ... Authors: Lomakin, I.B, Steitz, T.A. Deposit date: 2013-05-30 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (7.809 Å) Cite: The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 2013
4KZY	Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. Descriptor: 18S Ribosomal RNA, 40S Ribosomal Protein RACK1, 40S Ribosomal Protein S10, ... Authors: Lomakin, I.B, Steitz, T.A. Deposit date: 2013-05-30 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (7.01 Å) Cite: The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 2013
4KZZ	Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A Descriptor: 18S Ribosomal RNA, 40S Ribosomal Protein RACK1, 40S Ribosomal Protein S10, ... Authors: Lomakin, I.B, Steitz, T.A. Deposit date: 2013-05-30 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (7.0305 Å) Cite: The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 2013

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