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PDB: 303 results

8IF0
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BU of 8if0 by Molmil
NmeHNH-AcrIIC1 complex
Descriptor: Anti-CRISPR protein (AcrIIC1), CRISPR-associated endonuclease Cas9
Authors:Zhu, Y.L.
Deposit date:2023-02-16
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Inhibition Mechanism of CRISPR-Cas9 by Anti-CRISPR Protein AcrIIC1
To Be Published
6Y9N
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BU of 6y9n by Molmil
Crystal structure of Whirlin PDZ3_C-ter in complex with Myosin 15a C-terminal PDZ binding motif peptide
Descriptor: Unconventional myosin-XV, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-03-10
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
6Y9O
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Crystal structure of Whirlin PDZ3_C-ter in complex with CASK internal PDZ binding motif peptide
Descriptor: Peripheral plasma membrane protein CASK, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-03-10
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.632 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
6Y9Q
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BU of 6y9q by Molmil
Crystal structure of Whirlin PDZ3_C-ter in complex with Taperin internal PDZ binding motif peptide
Descriptor: Taperin, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-03-10
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.315 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
6Y9P
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BU of 6y9p by Molmil
Crystal structure of Whirlin PDZ3_C-ter in complex with Harmonin a1 C-terminal PDZ binding motif peptide
Descriptor: Harmonin a1, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-03-10
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.169 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
6Y38
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BU of 6y38 by Molmil
Crystal structure of Whirlin PDZ3 in complex with Myosin 15a C-terminal PDZ binding motif peptide
Descriptor: Chains: C,D, Whirlin
Authors:Zhu, Y, Delhommel, F, Haouz, A, Caillet-Saguy, C, Vaney, M, Mechaly, A.E, Wolff, N.
Deposit date:2020-02-17
Release date:2020-10-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Deciphering the Unexpected Binding Capacity of the Third PDZ Domain of Whirlin to Various Cochlear Hair Cell Partners.
J.Mol.Biol., 432, 2020
1F2S
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BU of 1f2s by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX FORMED BETWEEN BOVINE BETA-TRYPSIN AND MCTI-A, A TRYPSIN INHIBITOR OF SQUASH FAMILY AT 1.8 A RESOLUTION
Descriptor: CALCIUM ION, TRYPSIN, TRYPSIN INHIBITOR A
Authors:Zhu, Y, Huang, Q, Qian, M, Jia, Y, Tang, Y.
Deposit date:2000-05-29
Release date:2000-06-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Crystal structure of the complex formed between bovine beta-trypsin and MCTI-A, a trypsin inhibitor of squash family, at 1.8-A resolution.
J.Protein Chem., 18, 1999
7QXN
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BU of 7qxn by Molmil
Proteasome-ZFAND5 Complex Z+A state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-26
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXP
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BU of 7qxp by Molmil
Proteasome-ZFAND5 Complex Z+B state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-26
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXX
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BU of 7qxx by Molmil
Proteasome-ZFAND5 Complex Z+E state
Descriptor: 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, 26S protease regulatory subunit 7, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QYA
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BU of 7qya by Molmil
Proteasome-ZFAND5 Complex Z-B state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QYB
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BU of 7qyb by Molmil
Proteasome-ZFAND5 Complex Z-C state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QY7
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BU of 7qy7 by Molmil
Proteasome-ZFAND5 Complex Z-A state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXU
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BU of 7qxu by Molmil
Proteasome-ZFAND5 Complex Z+C state
Descriptor: 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, 26S protease regulatory subunit 7, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QXW
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BU of 7qxw by Molmil
Proteasome-ZFAND5 Complex Z+D state
Descriptor: 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, 26S protease regulatory subunit 7, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Mechanism of 26S proteasome activation by the 19S-interacting protein ZFAND5
To Be Published
7QCR
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BU of 7qcr by Molmil
MLLT4/Afadin PDZ domain in complex with the C-terminal peptide from protein E of SARS-CoV-2
Descriptor: Afadin, Envelope small membrane protein, SULFATE ION
Authors:Zhu, Y, Alvarez, F, Haouz, A, Mechaly, A, Caillet-Saguy, C.
Deposit date:2021-11-25
Release date:2022-04-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Interactions of Severe Acute Respiratory Syndrome Coronavirus 2 Protein E With Cell Junctions and Polarity PSD-95/Dlg/ZO-1-Containing Proteins.
Front Microbiol, 13, 2022
5CMZ
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BU of 5cmz by Molmil
Artificial HIV fusion inhibitor AP3 fused to the C-terminus of gp41 NHR
Descriptor: 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, Artificial HIV entry inhibitor AP3, ...
Authors:Zhu, Y, Ye, S, Zhang, R.
Deposit date:2015-07-17
Release date:2015-09-16
Method:X-RAY DIFFRACTION (2.574 Å)
Cite:Improved Pharmacological and Structural Properties of HIV Fusion Inhibitor AP3 over Enfuvirtide: Highlighting Advantages of Artificial Peptide Strategy.
Sci Rep, 5, 2015
5CN0
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BU of 5cn0 by Molmil
Artificial HIV fusion inhibitor AP2 fused to the C-terminus of gp41 NHR
Descriptor: DI(HYDROXYETHYL)ETHER, Envelope glycoprotein,AP2, MAGNESIUM ION
Authors:Zhu, Y, Ye, S, Zhang, R.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Improved Pharmacological and Structural Properties of HIV Fusion Inhibitor AP3 over Enfuvirtide: Highlighting Advantages of Artificial Peptide Strategy.
Sci Rep, 5, 2015
2WZS
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BU of 2wzs by Molmil
Structure of the Family GH92 Inverting Mannosidase BT3990 from Bacteroides thetaiotaomicron VPI-5482 in complex with Mannoimidazole
Descriptor: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL, CALCIUM ION, GLYCEROL, ...
Authors:Zhu, Y, Suits, M.D.L, Thompson, A, Chavan, S, Dinev, Z, Dumon, C, Smith, N, Moremen, K.W, Xiang, Y, Siriwardena, A, Williams, S.J, Gilbert, H.J, Davies, G.J.
Deposit date:2009-12-02
Release date:2009-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mechanistic Insights Into a Ca2+-Dependent Family of A-Mannosidases in a Human Gut Symbiont.
Nat.Chem.Biol., 6, 2010
3CVR
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BU of 3cvr by Molmil
Crystal structure of the full length IpaH3
Descriptor: Invasion plasmid antigen
Authors:Zhu, Y, Shao, F.
Deposit date:2008-04-19
Release date:2008-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a Shigella effector reveals a new class of ubiquitin ligases
Nat.Struct.Mol.Biol., 15, 2008
3L0I
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BU of 3l0i by Molmil
Complex structure of SidM/DrrA with the wild type Rab1
Descriptor: CHLORIDE ION, DrrA, Ras-related protein Rab-1A, ...
Authors:Zhu, Y, Shao, F.
Deposit date:2009-12-10
Release date:2009-12-22
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural mechanism of host Rab1 activation by the bifunctional Legionella type IV effector SidM/DrrA
Proc.Natl.Acad.Sci.USA, 107, 2010
3L0M
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Crystal structure of Rab1-activation domain and P4M domain of SidM/DrrA from legionella
Descriptor: DrrA, SULFATE ION
Authors:Zhu, Y, Shao, F.
Deposit date:2009-12-10
Release date:2009-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural mechanism of host Rab1 activation by the bifunctional Legionella type IV effector SidM/DrrA
Proc.Natl.Acad.Sci.USA, 107, 2010
1XDO
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BU of 1xdo by Molmil
Crystal Structure of Escherichia coli Polyphosphate Kinase
Descriptor: Polyphosphate kinase
Authors:Zhu, Y, Huang, W, Lee, S.S, Xu, W.
Deposit date:2004-09-07
Release date:2005-06-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of a polyphosphate kinase and its implications for polyphosphate synthesis
Embo Rep., 6, 2005
1XDP
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BU of 1xdp by Molmil
Crystal Structure of the E.coli Polyphosphate Kinase in complex with AMPPNP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Polyphosphate kinase
Authors:Zhu, Y, Huang, W, Lee, S.S, Xu, W.
Deposit date:2004-09-07
Release date:2005-06-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a polyphosphate kinase and its implications for polyphosphate synthesis
Embo Rep., 6, 2005
4Q77
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BU of 4q77 by Molmil
Crystal structure of Rot, a global regulator of virulence genes in Staphylococcus aureus
Descriptor: GLYCEROL, HTH-type transcriptional regulator rot
Authors:Zhu, Y, Fan, X, Li, X, Teng, M.
Deposit date:2014-04-24
Release date:2014-09-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure of Rot, a global regulator of virulence genes in Staphylococcus aureus.
Acta Crystallogr.,Sect.D, 70, 2014

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