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PDB: 179 results

6FIT
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BU of 6fit by Molmil
FHIT-TRANSITION STATE ANALOG
Descriptor: ADENOSINE MONOTUNGSTATE, FRAGILE HISTIDINE TRIAD PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
1AV5
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BU of 1av5 by Molmil
PKCI-SUBSTRATE ANALOG
Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, PROTEIN KINASE C INTERACTING PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
4M52
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BU of 4m52 by Molmil
Structure of Mtb Lpd bound to SL827
Descriptor: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, N~2~-[(2-amino-5-bromopyridin-3-yl)sulfonyl]-N-(4-methoxyphenyl)-N~2~-methylglycinamide
Authors:Lima, C.D.
Deposit date:2013-08-07
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipoamide channel-binding sulfonamides selectively inhibit mycobacterial lipoamide dehydrogenase.
Biochemistry, 52, 2013
3KYD
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BU of 3kyd by Molmil
Human SUMO E1~SUMO1-AMP tetrahedral intermediate mimic
Descriptor: 1,2-ETHANEDIOL, 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine, SUMO-activating enzyme subunit 1, ...
Authors:Lima, C.D.
Deposit date:2009-12-05
Release date:2010-02-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Active site remodelling accompanies thioester bond formation in the SUMO E1.
Nature, 463, 2010
3KYC
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BU of 3kyc by Molmil
Human SUMO E1 complex with a SUMO1-AMP mimic
Descriptor: 5'-deoxy-5'-(sulfamoylamino)adenosine, SUMO-activating enzyme subunit 1, SUMO-activating enzyme subunit 2, ...
Authors:Lima, C.D.
Deposit date:2009-12-05
Release date:2010-02-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Active site remodelling accompanies thioester bond formation in the SUMO E1.
Nature, 463, 2010
3KYH
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BU of 3kyh by Molmil
Saccharomyces cerevisiae Cet1-Ceg1 capping apparatus
Descriptor: mRNA-capping enzyme subunit alpha, mRNA-capping enzyme subunit beta
Authors:Lima, C.D.
Deposit date:2009-12-06
Release date:2010-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Saccharomyces cerevisiae Cet1-Ceg1 mRNA Capping Apparatus.
Structure, 18, 2010
6DG4
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BU of 6dg4 by Molmil
Structure of the Chaetomium thermophilum Ulp1-like SUMO protease catalytic domain
Descriptor: GLYCEROL, SULFATE ION, Ulp1-like SUMO protease
Authors:Lima, C.D, Baytshtok, V.
Deposit date:2018-05-16
Release date:2018-07-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.442 Å)
Cite:Discovery and engineering of enhanced SUMO protease enzymes.
J. Biol. Chem., 293, 2018
5FIT
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BU of 5fit by Molmil
FHIT-SUBSTRATE ANALOG
Descriptor: FRAGILE HISTIDINE TRIAD PROTEIN, PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
3II4
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BU of 3ii4 by Molmil
Structure of mycobacterial lipoamide dehydrogenase bound to a triazaspirodimethoxybenzoyl inhibitor
Descriptor: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, N-[2-(2,4-dichlorophenyl)ethyl]-2-{8-[(2,4-dimethoxyphenyl)carbonyl]-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl}acetamide
Authors:Lima, C.D.
Deposit date:2009-07-31
Release date:2010-01-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Triazaspirodimethoxybenzoyls as selective inhibitors of mycobacterial lipoamide dehydrogenase .
Biochemistry, 49, 2010
3I2D
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BU of 3i2d by Molmil
Crystal Structure of S. Cerevisiae SUMO E3 Ligase SIZ1
Descriptor: E3 SUMO-protein ligase SIZ1, ZINC ION
Authors:Lima, C.D, Yunus, A.A.
Deposit date:2009-06-29
Release date:2009-09-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the Siz/PIAS SUMO E3 ligase Siz1 and determinants required for SUMO modification of PCNA.
Mol.Cell, 35, 2009
1KPE
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BU of 1kpe by Molmil
PKCI-TRANSITION STATE ANALOG
Descriptor: ADENOSINE-5'-DITUNGSTATE, PROTEIN KINASE C INTERACTING PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
1KPF
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BU of 1kpf by Molmil
PKCI-SUBSTRATE ANALOG
Descriptor: ADENOSINE MONOPHOSPHATE, PROTEIN KINASE C INTERACTING PROTEIN
Authors:Lima, C.D, Klein, M.G, Hendrickson, W.A.
Deposit date:1997-09-25
Release date:1998-03-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-based analysis of catalysis and substrate definition in the HIT protein family.
Science, 278, 1997
5JNE
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BU of 5jne by Molmil
E2-SUMO-Siz1 E3-SUMO-PCNA complex
Descriptor: E3 SUMO-protein ligase SIZ1,Ubiquitin-like protein SMT3, GLYCEROL, Proliferating cell nuclear antigen, ...
Authors:Lima, C.D, Streich Jr, F.C.
Deposit date:2016-04-29
Release date:2016-08-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Capturing a substrate in an activated RING E3/E2-SUMO complex.
Nature, 536, 2016
5K36
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BU of 5k36 by Molmil
Structure of an eleven component nuclear RNA exosome complex bound to RNA
Descriptor: Exosome complex component CSL4, Exosome complex component MTR3, Exosome complex component RRP4, ...
Authors:Lima, C.D, Zinder, J.C.
Deposit date:2016-05-19
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Nuclear RNA Exosome at 3.1 angstrom Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3.
Mol.Cell, 64, 2016
3EAY
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BU of 3eay by Molmil
Crystal structure of the human SENP7 catalytic domain
Descriptor: SULFATE ION, Sentrin-specific protease 7
Authors:Lima, C.D, Reverter, D.
Deposit date:2008-08-26
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Human SENP7 Catalytic Domain and Poly-SUMO Deconjugation Activities for SENP6 and SENP7.
J.Biol.Chem., 283, 2008
3FIT
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BU of 3fit by Molmil
FHIT (FRAGILE HISTIDINE TRIAD PROTEIN) IN COMPLEX WITH ADENOSINE/SULFATE AMP ANALOG
Descriptor: ADENOSINE MONOPHOSPHATE, FRAGILE HISTIDINE PROTEIN, SULFATE ION, ...
Authors:Lima, C.D, D'Amico, K.L, Naday, I, Rosenbaum, G, Westbrook, E.M, Hendrickson, W.A.
Deposit date:1997-05-17
Release date:1997-11-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
Structure, 5, 1997
7KMY
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BU of 7kmy by Molmil
Structure of Mtb Lpd bound to 010705
Descriptor: Dihydrolipoyl dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Lima, C.D.
Deposit date:2020-11-03
Release date:2021-01-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Whole Cell Active Inhibitors of Mycobacterial Lipoamide Dehydrogenase Afford Selectivity over the Human Enzyme through Tight Binding Interactions.
Acs Infect Dis., 7, 2021
5E6J
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BU of 5e6j by Molmil
Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe
Descriptor: ACETATE ION, NICKEL (II) ION, Polyubiquitin-B, ...
Authors:Lima, C.D, Bekes, M.
Deposit date:2015-10-09
Release date:2016-05-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Recognition of Lys48-Linked Di-ubiquitin and Deubiquitinating Activities of the SARS Coronavirus Papain-like Protease.
Mol. Cell, 62, 2016
4PN0
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BU of 4pn0 by Molmil
Structure of S. pombe Pct1 RNA triphosphatase
Descriptor: mRNA-capping enzyme subunit beta
Authors:Lima, C.D, Doamekpor, S.K.
Deposit date:2014-05-22
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Fission yeast RNA triphosphatase reads an Spt5 CTD code.
Rna, 21, 2015
4PN1
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BU of 4pn1 by Molmil
Structure of S. pombe Pct1 RNA triphosphatase in complex with the Spt5 CTD
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Synthetic peptide, ...
Authors:Lima, C.D, Doamekpor, S.K.
Deposit date:2014-05-22
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.803 Å)
Cite:Fission yeast RNA triphosphatase reads an Spt5 CTD code.
Rna, 21, 2015
4OO1
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BU of 4oo1 by Molmil
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Exosome complex component CSL4, ...
Authors:Lima, C.D, Wasmuth, E.V.
Deposit date:2014-01-29
Release date:2014-07-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA.
Nature, 511, 2014
1ECL
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BU of 1ecl by Molmil
AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1).
Descriptor: ESCHERICHIA COLI TOPOISOMERASE I
Authors:Lima, C.D, Wang, J.C, Mondragon, A.
Deposit date:1995-05-05
Release date:1995-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I.
Nature, 367, 1994
6U75
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BU of 6u75 by Molmil
Crystal Structure of S. Cerevisiae SUMO E3 Ligase SIZ2
Descriptor: E3 SUMO-protein ligase SIZ2, ZINC ION
Authors:Lima, C.D, Cappadocia, L.
Deposit date:2019-08-31
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:DNA asymmetry promotes SUMO modification of the single-stranded DNA-binding protein RPA.
Embo J., 40, 2021
1JR7
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BU of 1jr7 by Molmil
CRYSTAL STRUCTURE OF GAB REVEALS OXIDOREDUCTASE FOLD
Descriptor: FE (II) ION, HYPOTHETICAL 37.4 KDA PROTEIN IN ILEY-GABD INTERGENIC REGION
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-08-12
Release date:2001-08-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural genomics: a pipeline for providing structures for the biologist.
Protein Sci., 11, 2002
1JF9
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BU of 1jf9 by Molmil
Crystal Structure of selenocysteine lyase
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SELENOCYSTEINE LYASE
Authors:Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-06-20
Release date:2001-07-04
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the E. coli NifS CsdB Protein at 2.0A Reveals the Structural Basis for Perselenide and Persulfide Intermediate Formation
J.Mol.Biol., 315, 2002

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