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1WX7
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BU of 1wx7 by Molmil
Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3)
分子名称: Ubiquilin 3
著者Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-01-20
公開日2005-07-20
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3)
To be Published
1WH3
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BU of 1wh3 by Molmil
Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL)
分子名称: 59 kDa 2'-5'-oligoadenylate synthetase like protein
著者Tochio, N, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL)
To be Published
1WY8
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BU of 1wy8 by Molmil
Solution Structure of the N-terminal Ubiquitin-like Domain in Human Np95/ICBP90-like Ring Finger Protein (NIRF)
分子名称: Np95-like ring finger protein, isoform a
著者Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-09
公開日2005-08-09
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of the N-terminal Ubiquitin-like Domain in Human Np95/ICBP90-like Ring Finger Protein (NIRF)
To be Published
7NPO
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BU of 7npo by Molmil
Branched K48-K63-Ub3
分子名称: GLYCEROL, Polyubiquitin-B
著者Lange, S.M, Kwasna, D, Kulathu, Y.
登録日2021-02-27
公開日2022-08-10
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Branched Lys48-Lys63-linked triubiquitin
To be published
7NBB
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BU of 7nbb by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3
分子名称: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
著者Lange, S.M, Kulathu, Y.
登録日2021-01-26
公開日2022-08-10
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3
To Be Published
1Z2M
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BU of 1z2m by Molmil
Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein
分子名称: OSMIUM 4+ ION, interferon, alpha-inducible protein (clone IFI-15K)
著者Narasimhan, J, Wang, M, Fu, Z, Klein, J.M, Haas, A.L, Kim, J.J.
登録日2005-03-08
公開日2005-05-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the Interferon-induced Ubiquitin-like Protein ISG15.
J.Biol.Chem., 280, 2005
1YQB
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BU of 1yqb by Molmil
Human Ubiquilin 3
分子名称: Ubiquilin 3
著者Walker, J.R, Xue, S, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2005-02-01
公開日2005-02-08
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Ubiquitin-like domain of Human Ubiquilin 3
To be Published
1YIW
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BU of 1yiw by Molmil
X-ray Crystal Structure of a Chemically Synthesized Ubiquitin
分子名称: CADMIUM ION, CHLORIDE ION, Ubiquitin
著者Bang, D, Makhatadze, G.I, Tereshko, V, Kossiakoff, A.A, Kent, S.B.
登録日2005-01-13
公開日2005-06-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin
Angew.Chem.Int.Ed.Engl., 44, 2005
7OOJ
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BU of 7ooj by Molmil
Structure of D-Thr53 Ubiquitin
分子名称: CADMIUM ION, Ubiquitin
著者Becker, S.
登録日2021-05-27
公開日2022-05-18
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A litmus test for classifying recognition mechanisms of transiently binding proteins.
Nat Commun, 13, 2022
1XQQ
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BU of 1xqq by Molmil
Simultaneous determination of protein structure and dynamics
分子名称: ubiquitin
著者Lindorff-Larsen, K, Best, R.B, DePristo, M.A, Vendruscolo, M, Dobson, C.M.
登録日2004-10-13
公開日2005-02-08
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Simultaneous determination of protein structure and dynamics
Nature, 433, 2005
1ZKH
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BU of 1zkh by Molmil
Solution structure of a human ubiquitin-like domain in SF3A1
分子名称: Splicing factor 3 subunit 1
著者Lukin, J.A, Dhe-Paganon, S, Guido, V, Lemak, A, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Edwards, A, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
登録日2005-05-02
公開日2005-05-10
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of a human ubiquitin-like domain in SF3A1
To be Published
1ZW7
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BU of 1zw7 by Molmil
Elimination of the C-cap in Ubiquitin Structure, Dynamics and Thermodynamic Consequences
分子名称: Ubiquitin
著者Ermolenko, D.N, Dangi, B, Gronenborn, A.M, Makhatadze, G.I.
登録日2005-06-03
公開日2006-05-16
最終更新日2021-10-20
実験手法SOLUTION NMR
主引用文献Elimination of the C-cap in ubiquitin-structure, dynamics and thermodynamic consequences.
Biophys.Chem., 126, 2007
6K4I
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BU of 6k4i by Molmil
The partially disordered conformation of ubiquitin (Q41N variant)
分子名称: ubiquitin
著者Wakamoto, T, Ikeya, T, Kitazawa, S, Baxter, N.J, Williamson, M.P, Kitahara, R.
登録日2019-05-24
公開日2019-10-30
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Paramagnetic relaxation enhancement-assisted structural characterization of a partially disordered conformation of ubiquitin.
Protein Sci., 28, 2019
6KNA
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BU of 6kna by Molmil
Viral Ubiquitin from Autographa californica Nucleo Polyhedrosis Virus
分子名称: Viral ubiquitin
著者Negi, H, Reddy, P.P, Das, R.
登録日2019-08-05
公開日2020-06-17
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献A novel polyubiquitin chain linkage formed by viral Ubiquitin is resistant to host deubiquitinating enzymes.
Biochem.J., 477, 2020
5OHL
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BU of 5ohl by Molmil
K6-specific affimer bound to K6 diUb
分子名称: GLYCEROL, K6-specific affimer, POLYETHYLENE GLYCOL (N=34), ...
著者Michel, M.A, Komander, D.
登録日2017-07-17
公開日2017-10-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling.
Mol. Cell, 68, 2017
5OHV
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BU of 5ohv by Molmil
K33-specific affimer bound to K33 diUb
分子名称: GLYCEROL, K33-specific affimer, SULFATE ION, ...
著者Michel, M.A, Komander, D.
登録日2017-07-18
公開日2017-10-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling.
Mol. Cell, 68, 2017
6KOX
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BU of 6kox by Molmil
Relaxed state of S65/T66 double-phosphorylated ubiquitin
分子名称: Polyubiquitin-B
著者Dong, X, Tang, C.
登録日2019-08-13
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
5N9V
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BU of 5n9v by Molmil
NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila.
分子名称: NAD(P)(+)--arginine ADP-ribosyltransferase
著者Chiarini, V, Tossavainen, H.
登録日2017-02-27
公開日2018-03-21
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus.
Biochim Biophys Acta Gen Subj, 1863, 2019
5O44
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BU of 5o44 by Molmil
Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages.
分子名称: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ...
著者Padala, P, Isupov, M.N, Wiener, R.
登録日2017-05-26
公開日2017-11-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages.
J. Mol. Biol., 429, 2017
5NMC
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BU of 5nmc by Molmil
Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb
分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION
著者Fermani, S, Falini, G.
登録日2017-04-05
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
6KOW
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BU of 6kow by Molmil
Retracted state of S65/T66 double-phosphorylated ubiquitin
分子名称: Polyubiquitin-B
著者Dong, X, Tang, C.
登録日2019-08-13
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch.
Protein Cell, 10, 2019
5NL5
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BU of 5nl5 by Molmil
Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NLF
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BU of 5nlf by Molmil
Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb
分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NLJ
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BU of 5nlj by Molmil
Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NVG
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BU of 5nvg by Molmil
Thr12 Phosphorylated Ubiquitin
分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B
著者Huguenin-Dezot, N.
登録日2017-05-04
公開日2017-05-31
最終更新日2017-09-13
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing.
Nat. Methods, 14, 2017

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