Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 124 results

2P46
DownloadVisualize
BU of 2p46 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 2.5A resolution: se5b-ortho-2 crystal form with five se-met sites (L4M, M34, M51, F68M, M83) in vhh scaffold.
Descriptor: ANTIBODY CAB-RN05, Ribonuclease pancreatic, ZINC ION
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
2P42
DownloadVisualize
BU of 2p42 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.8A resolution: SE3-mono-2 crystal form with three se-met sites (M34, M51, M83) in vhh scaffold
Descriptor: ANTIBODY CAB-RN05, MAGNESIUM ION, Ribonuclease pancreatic
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
2P48
DownloadVisualize
BU of 2p48 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 2.3A resolution: SE5B-tetra crystal form with five se-met sites (L4M, M34, M51, F68M, M83) in vhh scaffold.
Descriptor: ANTIBODY CAB-RN05, Ribonuclease pancreatic, SULFATE ION
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
2P45
DownloadVisualize
BU of 2p45 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.1A resolution: SE5B-ORTHO-1 crystal form with five se-met sites (L4M, M34, M51, F68M, M83) in vhh scaffold.
Descriptor: ANTIBODY CAB-RN05, Ribonuclease pancreatic, SULFATE ION
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
2P47
DownloadVisualize
BU of 2p47 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 2.5A resolution: SE5B-TRI crystal form with five se-met sites (L4M, M34, M51, F68M, M83) in vhh scaffold.
Descriptor: ANTIBODY CAB-RN05, Ribonuclease pancreatic
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
2P44
DownloadVisualize
BU of 2p44 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.8A resolution: SE5A-mono-1 crystal form with five se-met sites (M34, M51, F68M, M83, L86M) in vhh scaffold
Descriptor: ANTIBODY CAB-RN05, Ribonuclease pancreatic
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
2P43
DownloadVisualize
BU of 2p43 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.65A resolution: SE3-mono-1 crystal form with three se-met sites (M34, M51, M83) in vhh scaffold
Descriptor: ANTIBODY CAB-RN05, Ribonuclease pancreatic
Authors:Tereshko, V, Uysal, S, Koide, A, Margalef, K, Koide, S, Kossiakoff, A.A.
Deposit date:2007-03-11
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
Protein Sci., 17, 2008
412D
DownloadVisualize
BU of 412d by Molmil
DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHYL-[TRI(OXYETHYL)] RIBONUCLEOSIDE
Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Tereshko, V, Portmann, S, Tay, E.C, Martin, P, Natt, F, Altmann, K.H, Egli, M.
Deposit date:1998-06-30
Release date:1998-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues.
Biochemistry, 37, 1998
1NTA
DownloadVisualize
BU of 1nta by Molmil
2.9 A crystal structure of Streptomycin RNA-aptamer
Descriptor: 5'-R(*CP*GP*GP*CP*AP*CP*CP*AP*CP*GP*GP*UP*CP*GP*GP*AP*UP*C)-3', 5'-R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP*CP*UP*UP*CP*UP*GP*CP*C)-3', BARIUM ION, ...
Authors:Tereshko, V, Skripkin, E, Patel, D.J.
Deposit date:2003-01-29
Release date:2003-05-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Encapsulating Streptomycin within a small 40-mer RNA
CHEM.BIOL., 10, 2003
1NTB
DownloadVisualize
BU of 1ntb by Molmil
2.9 A crystal structure of Streptomycin RNA-aptamer complex
Descriptor: 5'-R(*CP*GP*GP*CP*AP*CP*CP*AP*CP*GP*GP*UP*CP*GP*GP*AP*UP*C)-3', 5'-R(*GP*GP*AP*UP*CP*GP*CP*AP*UP*UP*UP*GP*GP*AP*CP*UP*UP*CP*UP*GP*CP*C)-3', MAGNESIUM ION, ...
Authors:Tereshko, V, Skripkin, E, Patel, D.J.
Deposit date:2003-01-29
Release date:2003-05-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Encapsulating Streptomycin within a small 40-mer RNA
CHEM.BIOL., 10, 2003
2HV2
DownloadVisualize
BU of 2hv2 by Molmil
Crystal Structure of Conserved Protein of Unknown Function from Enterococcus faecalis V583 at 2.4 A Resolution, Probable N-Acyltransferase
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Hypothetical protein, TETRAETHYLENE GLYCOL
Authors:Tereshko, V.A, Qiu, Y, Kossiakoff, A.A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-07-27
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of conserved hypothetical protein from Enterococcus faecalis V583 at 2.4 A resolution.
To be Published
1S6Y
DownloadVisualize
BU of 1s6y by Molmil
2.3A crystal structure of phospho-beta-glucosidase
Descriptor: 6-phospho-beta-glucosidase
Authors:Tereshko, V, Dementieva, I, Kim, Y, Collat, F, Joachimiak, A, Kossiakoff, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-01-28
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:2.3A CRYSTAL STRUCTURE OF PHOSPHO-BETA-GLUCOSIDASE, licH Gene Product from BACILLUS STEAROTHERMOPHILUS
To be Published
363D
DownloadVisualize
BU of 363d by Molmil
High-resolution crystal structure of a fully modified N3'-> P5' phosphoramidate DNA dodecamer duplex
Descriptor: 5'-D(*(C42)P*(G38)P*(C42)P*(G38)P*(A43)P*(A43)P*(NYM)P*(NYM)P*(C42)P*(G38)P*(C42)P*DG)-3', AMMONIUM ION, CHLORIDE ION
Authors:Tereshko, V, Gryaznov, S, Egli, M.
Deposit date:1997-11-26
Release date:1997-12-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Consequences of Replacing the DNA 3'-Oxygen by an Amino Group: High-Resolution Crystal Structure of a Fully Modified N3'--> P5' Phosphoramidate DNA Dodecamer Duplex
J.Am.Chem.Soc., 120, 1998
410D
DownloadVisualize
BU of 410d by Molmil
DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-ETHOXYMETHYLENE RIBONUCLEOSIDE
Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(T38)P*AP*CP*GP*C)-3'), SPERMINE
Authors:Tereshko, V, Portmann, S, Tay, E.C, Martin, P, Natt, F, Altmann, K.H, Egli, M.
Deposit date:1998-06-30
Release date:1998-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues.
Biochemistry, 37, 1998
436D
DownloadVisualize
BU of 436d by Molmil
THE DICKERSON-DREW B-DNA DODECAMER REVISITED-AT ATOMIC RESOLUTION
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION
Authors:Tereshko, V, Minasov, G, Egli, M.
Deposit date:1998-11-12
Release date:1998-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The Dickerson-Drew B-DNA Dodecamer Revisited-At Atomic Resolution
J.Am.Chem.Soc., 121, 1999
411D
DownloadVisualize
BU of 411d by Molmil
DUPLEX [5'-D(GCGTA+TACGC)]2 WITH INCORPORATED 2'-O-METHOXYETHYL RIBONUCLEOSIDE
Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(T39)P*AP*CP*GP*C)-3')
Authors:Tereshko, V, Portmann, S, Tay, E.C, Martin, P, Natt, F, Altmann, K.H, Egli, M.
Deposit date:1998-06-30
Release date:1998-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Correlating structure and stability of DNA duplexes with incorporated 2'-O-modified RNA analogues.
Biochemistry, 37, 1998
461D
DownloadVisualize
BU of 461d by Molmil
A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVE
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, RUBIDIUM ION
Authors:Tereshko, V, Minasov, G, Egli, M.
Deposit date:1999-03-12
Release date:1999-04-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A "Hydrat-Ion Spine" in a B-DNA minor groove
J.Am.Chem.Soc., 121, 1999
460D
DownloadVisualize
BU of 460d by Molmil
A "HYDRAT-ION SPINE" IN A B-DNA MINOR GROOVE
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, RUBIDIUM ION
Authors:Tereshko, V, Minasov, G, Egli, M.
Deposit date:1999-03-12
Release date:1999-04-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A "Hydrat-Ion Spine" in a B-DNA minor groove
J.Am.Chem.Soc., 121, 1999
1JKT
DownloadVisualize
BU of 1jkt by Molmil
TETRAGONAL CRYSTAL FORM OF A CATALYTIC DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE
Descriptor: DEATH-ASSOCIATED PROTEIN KINASE
Authors:Tereshko, V, Teplova, M, Brunzelle, J, Watterson, D.M, Egli, M.
Deposit date:2001-07-13
Release date:2002-04-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structures of the catalytic domain of human protein kinase associated with apoptosis and tumor suppression.
Nat.Struct.Biol., 8, 2001
3DRY
DownloadVisualize
BU of 3dry by Molmil
X-ray crystal structure of human KCTD5 protein crystallized in low-salt buffer
Descriptor: BTB/POZ domain-containing protein KCTD5
Authors:Tereshko, V, Dementieva, I, Goldstein, S.A.N.
Deposit date:2008-07-11
Release date:2009-02-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Pentameric assembly of potassium channel tetramerization domain-containing protein 5.
J.Mol.Biol., 387, 2009
3DRZ
DownloadVisualize
BU of 3drz by Molmil
X-ray crystal structure of the N-terminal BTB domain of human KCTD5 protein
Descriptor: BTB/POZ domain-containing protein KCTD5
Authors:Tereshko, V, Dementieva, I, Goldstein, S.A.N.
Deposit date:2008-07-11
Release date:2009-02-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pentameric assembly of potassium channel tetramerization domain-containing protein 5.
J.Mol.Biol., 387, 2009
1X87
DownloadVisualize
BU of 1x87 by Molmil
2.4A X-ray structure of Urocanase protein complexed with NAD
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Urocanase protein
Authors:Tereshko, V, Zaborske, J, Gilbreth, R, Dementieva, I, Collart, F, Joachimiak, A, Kossiakoff, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-08-17
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:2.4A X-ray structure of Urocanase protein complexed with NAD
To be Published
3DRX
DownloadVisualize
BU of 3drx by Molmil
X-ray crystal structure of human KCTD5 protein crystallized in high-salt buffer
Descriptor: BTB/POZ domain-containing protein KCTD5
Authors:Tereshko, V, Dementieva, I, Goldstein, S.A.N.
Deposit date:2008-07-11
Release date:2009-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Pentameric assembly of potassium channel tetramerization domain-containing protein 5.
J.Mol.Biol., 387, 2009
2P49
DownloadVisualize
BU of 2p49 by Molmil
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.4A resolution: native mono_1 crystal form
Descriptor: ANTIBODY CAB-RN05, PHOSPHATE ION, Ribonuclease pancreatic
Authors:Tereshko, V, Uysal, S, Margalef, K, Koide, A, Kossiakoff, A.A, Koide, S.
Deposit date:2007-03-11
Release date:2007-08-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Exploring the capacity of minimalist protein interfaces: interface energetics and affinity maturation to picomolar KD of a single-domain antibody with a flat paratope.
J.Mol.Biol., 373, 2007
2P4A
DownloadVisualize
BU of 2p4a by Molmil
X-ray structure of a camelid affinity matured single-domain vhh antibody fragment in complex with RNASE A
Descriptor: ANTIBODY CAB-RN05, Ribonuclease pancreatic, SULFATE ION
Authors:Tereshko, V, Koide, A, Uysal, S, Koide, S.
Deposit date:2007-03-11
Release date:2007-08-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Exploring the capacity of minimalist protein interfaces: interface energetics and affinity maturation to picomolar KD of a single-domain antibody with a flat paratope.
J.Mol.Biol., 373, 2007

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon