PDB: 898 resultsInfo pagesStatus searchChemie searchBIRD

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3EGN	C-terminal RNA Recognition Motif of the U11/U12 65K Protein Descriptor: RNA-binding protein 40 Authors: Netter, C, Wahl, M.C. Deposit date: 2008-09-11 Release date: 2009-06-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Functional stabilization of an RNA recognition motif by a noncanonical N-terminal expansion Rna, 15, 2009
3EX7	The crystal structure of EJC in its transition state Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Eukaryotic initiation factor 4A-III, ... Authors: Andersen, G.R, Nielsen, K.H. Deposit date: 2008-10-16 Release date: 2008-12-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Mechanism of ATP turnover inhibition in the EJC Rna, 15, 2009
3FEY	Crystal structure of the CBC-importin alpha complex. Descriptor: Importin subunit alpha-2, Nuclear cap-binding protein subunit 1, Nuclear cap-binding protein subunit 2 Authors: Dias, S.M.G, Ambrosio, A.L.B, Cerione, R.A. Deposit date: 2008-12-01 Release date: 2009-08-11 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The molecular basis for the regulation of the cap-binding complex by the importins. Nat.Struct.Mol.Biol., 16, 2009
3FEX	Crystal structure of the CBC-importin alpha complex. Descriptor: Importin subunit alpha-2, Nuclear cap-binding protein subunit 1, Nuclear cap-binding protein subunit 2 Authors: Dias, S.M.G, Ambrosio, A.L.B, Cerione, R.A. Deposit date: 2008-12-01 Release date: 2009-08-11 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.549 Å) Cite: The molecular basis for the regulation of the cap-binding complex by the importins. Nat.Struct.Mol.Biol., 16, 2009
2RQ4	Refinement of RNA binding domain 3 in CUG triplet repeat RNA-binding protein 1 Descriptor: CUG-BP- and ETR-3-like factor 1 Authors: Tsuda, K, Kuwasako, K, Takahashi, M, Someya, T, Inoue, M, Terada, T, Kobayashi, N, Shirouzu, M, Kigawa, T, Guntert, P, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2009-01-19 Release date: 2009-08-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3 Nucleic Acids Res., 2009
3G8S	Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme Descriptor: GLMS RIBOZYME, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-12 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
3G8T	Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-12 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
3G96	Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-mannopyranose, GLMS RIBOZYME, MAGNESIUM ION, ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-12 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
3G9C	Crystal structure of the product Bacillus anthracis glmS ribozyme Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-13 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
2KG1	Structure of the third qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA Descriptor: 5'-R(*AP*GP*GP*GP*AP*U)-3', Heterogeneous nuclear ribonucleoprotein F Authors: Allain, F.H.T, Dominguez, C. Deposit date: 2009-03-02 Release date: 2010-06-09 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat.Struct.Mol.Biol., 17, 2010
2KG0	Structure of the second qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA Descriptor: 5'-R(*AP*GP*GP*GP*AP*U)-3', Heterogeneous nuclear ribonucleoprotein F Authors: Allain, F.H.T, Dominguez, C. Deposit date: 2009-03-02 Release date: 2010-06-09 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat.Struct.Mol.Biol., 17, 2010
2KH9	Solution structure of yeast Prp24-RRM2 bound to a fragment of U6 RNA Descriptor: 5'-R(*AP*GP*AP*GP*AP*U)-3', U4/U6 snRNA-associated-splicing factor PRP24 Authors: Martin-Tumasz, S.A, Butcher, S.E. Deposit date: 2009-03-27 Release date: 2010-03-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and functional implications of a complex containing a segment of U6 RNA bound by a domain of Prp24. Rna, 16, 2010
2KHC	Bruno RRM3+ Descriptor: Testis-specific RNP-type RNA binding protein Authors: Lyon, A.M, Reveal, B.S, Macdonald, P.M, Hoffman, D.W. Deposit date: 2009-04-01 Release date: 2009-12-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Bruno protein contains an expanded RNA recognition motif. Biochemistry, 48, 2009
2RQC	Solution Structure of RNA-binding domain 3 of CUGBP1 in complex with RNA (UG)3 Descriptor: 5'-R(*UP*GP*UP*GP*UP*G)-3', CUG-BP- and ETR-3-like factor 1 Authors: Tsuda, K, Kuwasako, K, Takahashi, M, Someya, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2009-04-09 Release date: 2009-08-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3 Nucleic Acids Res., 37, 2009
3H2V	Human raver1 RRM1 domain in complex with human vinculin tail domain Vt Descriptor: Raver-1, Vinculin Authors: Lee, J.H, Rangarajan, E.S, Yogesha, S.D, Izard, T. Deposit date: 2009-04-14 Release date: 2009-07-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Raver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions Structure, 17, 2009
3H2U	Human raver1 RRM1, RRM2, and RRM3 domains in complex with human vinculin tail domain Vt Descriptor: Raver-1, Vinculin Authors: Lee, J.H, Rangarajan, E.S, Yogesha, S.D, Izard, T. Deposit date: 2009-04-14 Release date: 2009-07-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Raver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions Structure, 17, 2009
2KI2	Solution Structure of ss-DNA Binding Protein 12RNP2 Precursor, HP0827(O25501_HELPY) form Helicobacter pylori Descriptor: Ss-DNA binding protein 12RNP2 Authors: Ma, C, Lee, J, Kim, J, Park, S, Kwon, A, Lee, B. Deposit date: 2009-04-20 Release date: 2009-10-20 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: NMR solution structure of HP0827 (O25501_HELPY) from Helicobacter pylori: model of the possible RNA-binding site J.Biochem., 146, 2009
3HHN	Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD Descriptor: Class I ligase ribozyme, self-ligation product, MAGNESIUM ION, ... Authors: Shechner, D.M, Grant, R.A, Bagby, S.C, Bartel, D.P. Deposit date: 2009-05-15 Release date: 2009-11-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.987 Å) Cite: Crystal structure of the catalytic core of an RNA-polymerase ribozyme. Science, 326, 2009
3HI9	The x-ray crystal structure of the first RNA recognition motif (RRM1) of the AU-rich element (ARE) binding protein HuR at 2.0 angstrom resolution Descriptor: ELAV-like protein 1 Authors: Benoit, R.M, Kallen, J. Deposit date: 2009-05-19 Release date: 2010-03-31 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2 Å) Cite: The X-ray Crystal Structure of the First RNA Recognition Motif and Site-Directed Mutagenesis Suggest a Possible HuR Redox Sensing Mechanism. J.Mol.Biol., 397, 2010
2KM8	Interdomain RRM packing contributes to RNA recognition in the rna15, hrp1, anchor RNA 3' processing ternary complex Descriptor: 5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*AP*UP*AP*AP*U)-3', Nuclear polyadenylated RNA-binding protein 4, mRNA 3'-end-processing protein RNA15 Authors: Leeper, T.C, Varani, G. Deposit date: 2009-07-24 Release date: 2010-07-28 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Novel Protein-Protein Contacts Facilitate mRNA 3'-Processing Signal Recognition by Rna15 and Hrp1. J.Mol.Biol., 401, 2010
3IIN	Plasticity of the kink turn structural motif Descriptor: DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*GP*AP*CP*C)-D(P*AP*GP*A)-R(P*CP*GP*GP*CP*C)-3'), DNA/RNA (5'-R(*CP*A)-D(P*T)-3'), Group I intron, ... Authors: Lipchock, S.V, Strobel, S.A, Antonioli, A.H, Cochrane, J.C. Deposit date: 2009-08-02 Release date: 2010-03-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (4.18 Å) Cite: Plasticity of the RNA kink turn structural motif. Rna, 16, 2010
2KN4	The structure of the RRM domain of SC35 Descriptor: Immunoglobulin G-binding protein G,Serine/arginine-rich splicing factor 2 Authors: Clayton, J.C, Goult, B.T, Lian, L.-Y. Deposit date: 2009-08-14 Release date: 2010-08-18 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The structure and selectivity of the SR protein SRSF2 RRM domain with RNA Nucleic Acids Res., 2011
3IRW	Structure of a c-di-GMP riboswitch from V. cholerae Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ... Authors: Smith, K.D. Deposit date: 2009-08-24 Release date: 2009-11-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis of ligand binding by a c-di-GMP riboswitch. Nat.Struct.Mol.Biol., 16, 2009
3IWN	Co-crystal structure of a bacterial c-di-GMP riboswitch Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), C-di-GMP riboswitch, U1 small nuclear ribonucleoprotein A Authors: Kulshina, N, Baird, N.J, Ferre-D'Amare, A.R. Deposit date: 2009-09-02 Release date: 2009-11-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat.Struct.Mol.Biol., 16, 2009
3K0J	Crystal structure of the E. coli ThiM riboswitch in complex with thiamine pyrophosphate and the U1A crystallization module Descriptor: MAGNESIUM ION, RNA (87-MER), THIAMINE DIPHOSPHATE, ... Authors: Kulshina, N, Edwards, T.E, Ferre-D'Amare, A.R. Deposit date: 2009-09-24 Release date: 2009-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch. Rna, 16, 2010

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