Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1P98
DownloadVisualize
BU of 1p98 by Molmil
High-resolution NMR structure of the Ubl-domain of HHR23A
Descriptor: UV excision repair protein RAD23 homolog A
Authors:Mueller, T.D, Feigon, J.
Deposit date:2003-05-09
Release date:2003-10-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural determinants for the binding of ubiquitin-like domains to the proteasome.
Embo J., 22, 2003
1M94
DownloadVisualize
BU of 1m94 by Molmil
Solution Structure of the Yeast Ubiquitin-Like Modifier Protein Hub1
Descriptor: Protein YNR032c-a
Authors:Ramelot, T.A, Cort, J.R, Yee, A.A, Semesi, A, Edwards, A.M, Arrowsmith, C.H, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG)
Deposit date:2002-07-26
Release date:2002-12-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of the Yeast Ubiquitin-Like Modifier Protein Hub1
J.STRUCT.FUNCT.GENOM., 4, 2003
1P0R
DownloadVisualize
BU of 1p0r by Molmil
Solution Structure of UBL5 a human Ubiquitin-Like Protein
Descriptor: ubiquitin-like 5
Authors:McNally, T, Huang, Q, Janis, R.S, Liu, Z, Olejniczak, E.T, Reilly, R.M.
Deposit date:2003-04-10
Release date:2003-10-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural analysis of UBL5, a novel ubiquitin-like modifier
Protein Sci., 12, 2003
4PIJ
DownloadVisualize
BU of 4pij by Molmil
X-ray crystal structure of the K11S/K63S double mutant of ubiquitin
Descriptor: GLYCEROL, SULFATE ION, Ubiquitin
Authors:Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L.
Deposit date:2014-05-08
Release date:2014-10-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
1MG8
DownloadVisualize
BU of 1mg8 by Molmil
NMR structure of ubiquitin-like domain in murine Parkin
Descriptor: Parkin
Authors:Tashiro, M, Okubo, S, Shimotakahara, S, Hatanaka, H, Yasuda, H, Kainosho, M, Yokoyama, S, Shindo, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-08-15
Release date:2003-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR structure of ubiquitin-like domain in PARKIN: Gene product of familial Parkinson's disease.
J.Biomol.NMR, 25, 2003
4PIH
DownloadVisualize
BU of 4pih by Molmil
X-ray crystal structure of the K33S mutant of ubiquitin
Descriptor: CALCIUM ION, CHLORIDE ION, Ubiquitin
Authors:Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L.
Deposit date:2014-05-08
Release date:2014-10-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
1P1A
DownloadVisualize
BU of 1p1a by Molmil
NMR structure of ubiquitin-like domain of hHR23B
Descriptor: UV excision repair protein RAD23 homolog B
Authors:Ryu, K.S, Lee, K.J, Bae, S.H, Kim, B.K, Kim, K.A, Choi, B.S.
Deposit date:2003-04-11
Release date:2004-07-13
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a
J.Biol.Chem., 278, 2003
4PIG
DownloadVisualize
BU of 4pig by Molmil
Crystal structure of the ubiquitin K11S mutant
Descriptor: CALCIUM ION, CHLORIDE ION, SODIUM ION, ...
Authors:Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L.
Deposit date:2014-05-08
Release date:2014-10-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
1Q5W
DownloadVisualize
BU of 1q5w by Molmil
Ubiquitin Recognition by Npl4 Zinc-Fingers
Descriptor: Ubiquitin, ZINC ION, homolog of yeast nuclear protein localization 4
Authors:Alam, S.L, Sun, J, Payne, M, Welch, B.D, Blake, B.K, Davis, D.R, Meyer, H.H, Emr, S.D, Sundquist, W.I.
Deposit date:2003-08-11
Release date:2004-03-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Ubiquitin interactions of NZF zinc fingers.
Embo J., 23, 2004
7F0N
DownloadVisualize
BU of 7f0n by Molmil
Structure of deamidated Ubiquitin
Descriptor: MAGNESIUM ION, POTASSIUM ION, SODIUM ION, ...
Authors:Chauhan, K, Varshney, N, Das, R.
Deposit date:2021-06-06
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of deamidated Ubiquitin
To Be Published
2BWF
DownloadVisualize
BU of 2bwf by Molmil
Crystal structure of the UBL domain of Dsk2 from S. cerevisiae
Descriptor: FORMIC ACID, UBIQUITIN-LIKE PROTEIN DSK2
Authors:Lowe, E.D, Hasan, N, Trempe, J.-F, Fonso, L, Noble, M.E.M, Endicott, J.A, Johnson, L.N, Brown, N.R.
Deposit date:2005-07-13
Release date:2006-01-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structures of the Dsk2 Ubl and Uba Domains and Their Complex.
Acta Crystallogr.,Sect.D, 62, 2006
2BWE
DownloadVisualize
BU of 2bwe by Molmil
The crystal structure of the complex between the UBA and UBL domains of Dsk2
Descriptor: DSK2
Authors:Lowe, E.D, Hasan, N, Trempe, J.-F, Fonso, L, Noble, M.E.M, Endicott, J.A, Johnson, L.N, Brown, N.R.
Deposit date:2005-07-13
Release date:2006-01-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of the Dsk2 Ubl and Uba Domains and Their Complex.
Acta Crystallogr.,Sect.D, 62, 2006
2BGF
DownloadVisualize
BU of 2bgf by Molmil
NMR structure of Lys48-linked di-ubiquitin using chemical shift perturbation data together with RDCs and 15N-relaxation data
Descriptor: DI-UBIQUITIN
Authors:Van Dijk, A.D.J, Fushman, D, Bonvin, A.M.J.J.
Deposit date:2004-12-22
Release date:2005-08-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Various Strategies of Using Residual Dipolar Couplings in NMR-Driven Protein Docking: Application to Lys48-Linked Di-Ubiquitin and Validation Against 15N-Relaxation Data
Proteins: Struct., Funct., Bioinf., 60, 2005
2DZI
DownloadVisualize
BU of 2dzi by Molmil
2DZI/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Ubiquitin-like Protein 4A (GDX)
Descriptor: Ubiquitin-like protein 4A
Authors:Zhao, C, Sato, M, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-03-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:2DZI/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Ubiquitin-like Protein 4A (GDX)
To be Published
2DEN
DownloadVisualize
BU of 2den by Molmil
Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin
Descriptor: Immunoglobulin G-binding protein G,Ubiquitin-like protein 7, Polyubiquitin-B
Authors:Hu, H.Y, Lin, D.H, Chang, Y.G.
Deposit date:2006-02-14
Release date:2006-06-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin
Protein Sci., 15, 2006
2D3G
DownloadVisualize
BU of 2d3g by Molmil
Double sided ubiquitin binding of Hrs-UIM
Descriptor: ubiquitin, ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase substrate
Authors:Hirano, S, Kawasaki, M, Kato, R, Wakatsuki, S.
Deposit date:2005-09-28
Release date:2005-12-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting
Nat.Struct.Mol.Biol., 13, 2006
2DAF
DownloadVisualize
BU of 2daf by Molmil
Solution Structure of the Novel Identified Ubiquitin-like Domain in the Human Hypothetical Protein FLJ35834
Descriptor: FLJ35834 protein
Authors:Zhao, C, Kigawa, T, Saito, K, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-14
Release date:2006-06-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of the Novel Identified Ubiquitin-like Domain in the Human Hypothetical Protein FLJ35834
To be Published
2FCQ
DownloadVisualize
BU of 2fcq by Molmil
X-ray Crystal Structure of a Chemically Synthesized Ubiquitin with a Cubic Space Group
Descriptor: CADMIUM ION, Ubiquitin
Authors:Bang, D, Gribenko, A.V, Tereshko, V, Kossiakoff, A.A, Kent, S.B, Makhatadze, G.I.
Deposit date:2005-12-12
Release date:2006-01-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Dissecting the energetics of protein alpha-helix C-cap termination through chemical protein synthesis.
Nat.Chem.Biol., 2, 2006
2KO3
DownloadVisualize
BU of 2ko3 by Molmil
Nedd8 solution structure
Descriptor: NEDD8
Authors:Choi, Y.S, Jeon, Y.H, Cheong, C.
Deposit date:2009-09-09
Release date:2009-11-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:60th residues of ubiquitin and Nedd8 are located out of E2-binding surfaces, but are important for K48 ubiquitin-linkage.
Febs Lett., 583, 2009
2KLC
DownloadVisualize
BU of 2klc by Molmil
NMR solution structure of human ubiquitin-like domain of ubiquilin 1, Northeast Structural Genomics Consortium (NESG) target HT5A
Descriptor: Ubiquilin-1
Authors:Doherty, R.S, Dhe-Paganon, S, Fares, C, Lemak, S, Gutmanas, A, Garcia, M, Yee, A, Montelione, G.T, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC), Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2009-06-30
Release date:2009-07-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of ubiquitin-like domain of ubiquilin 1
To be Published
2KX0
DownloadVisualize
BU of 2kx0 by Molmil
the solution structure of UBB+1, frameshift mutant of ubiquitin B
Descriptor: ubiquitin B
Authors:Ko, S.
Deposit date:2010-04-22
Release date:2010-09-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:the solution structure of UBB+1, frameshift mutant of ubiquitin B
To be Published
2KLG
DownloadVisualize
BU of 2klg by Molmil
PERE NMR structure of ubiquitin
Descriptor: Ubiquitin
Authors:Madl, T, Bermel, W, Zangger, K.
Deposit date:2009-07-02
Release date:2009-10-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Use of Relaxation Enhancements in a Paramagnetic Environment for the Structure Determination of Proteins Using NMR Spectroscopy
Angew.Chem.Int.Ed.Engl., 48, 2009
2KN5
DownloadVisualize
BU of 2kn5 by Molmil
A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
Descriptor: Ubiquitin
Authors:Friedland, G.D.
Deposit date:2009-08-14
Release date:2009-11-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family.
PLOS COMPUT.BIOL., 5, 2009
2KOX
DownloadVisualize
BU of 2kox by Molmil
NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin
Descriptor: Ubiquitin
Authors:Fenwick, R.B, Richter, B, Lee, D, Walter, K.F.A, Milovanovic, D, Becker, S, Lakomek, N.A, Griesinger, C, Salvatella, X.
Deposit date:2009-10-02
Release date:2011-06-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition
J.Am.Chem.Soc., 2011
2KX3
DownloadVisualize
BU of 2kx3 by Molmil
The solution structure of the mutant of UBL domain of UBLCP1, I5M
Descriptor: Ubiquitin-like domain-containing CTD phosphatase 1
Authors:Lee, N, Ko, S.
Deposit date:2010-04-23
Release date:2011-04-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of the mutant of UBL domain of UBLCP1, I5M
To be Published

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon