Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9EUY
DownloadVisualize
BU of 9euy by Molmil
Cryo-EM structure of the full-length Pseudomonas aeruginosa bacteriophytochrome in its Pfr state
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
著者Bodizs, S, Westenhoff, S.
登録日2024-03-28
公開日2024-09-04
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Cryo-EM structures of a bathy phytochrome histidine kinase reveal a unique light-dependent activation mechanism.
Structure, 2024
9EUT
DownloadVisualize
BU of 9eut by Molmil
Cryo-EM structure of the full-length Pseudomonas aeruginosa bacteriophytochrome in its Pr state
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
著者Bodizs, S, Westenhoff, S.
登録日2024-03-28
公開日2024-09-04
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Cryo-EM structures of a bathy phytochrome histidine kinase reveal a unique light-dependent activation mechanism.
Structure, 2024
8W26
DownloadVisualize
BU of 8w26 by Molmil
X-ray crystal structure of the GAF-PHY domains of SyB-Cph1
分子名称: 1,2-ETHANEDIOL, ACETATE ION, PHYCOCYANOBILIN, ...
著者Burgie, E.S, Vierstra, R.D.
登録日2024-02-20
公開日2024-05-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of the Photosensory Module from a PAS-Less Cyanobacterial Phytochrome Reveals a Hybrid Activated Conformation in the Dark-Adapted Pr State
To Be Published
8ULG
DownloadVisualize
BU of 8ulg by Molmil
Cryo-EM structure of bovine phosphodiesterase 6 bound to IBMX
分子名称: 3-ISOBUTYL-1-METHYLXANTHINE, CYCLIC GUANOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
著者Aplin, C, Cerione, R.A.
登録日2023-10-16
公開日2024-01-17
最終更新日2024-02-07
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Probing the mechanism by which the retinal G protein transducin activates its biological effector PDE6.
J.Biol.Chem., 300, 2023
8UGS
DownloadVisualize
BU of 8ugs by Molmil
Cryo-EM structure of bovine phosphodiesterase 6 bound to cGMP
分子名称: CYCLIC GUANOSINE MONOPHOSPHATE, MAGNESIUM ION, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma, ...
著者Aplin, C, Cerione, R.A.
登録日2023-10-06
公開日2024-01-17
最終更新日2024-02-07
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Probing the mechanism by which the retinal G protein transducin activates its biological effector PDE6.
J.Biol.Chem., 300, 2023
8UGB
DownloadVisualize
BU of 8ugb by Molmil
Cryo-EM structure of bovine phosphodiesterase 6 bound to udenafil
分子名称: CYCLIC GUANOSINE MONOPHOSPHATE, MAGNESIUM ION, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma, ...
著者Aplin, C, Cerione, R.A.
登録日2023-10-05
公開日2024-01-17
最終更新日2024-02-07
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Probing the mechanism by which the retinal G protein transducin activates its biological effector PDE6.
J.Biol.Chem., 300, 2023
8UFI
DownloadVisualize
BU of 8ufi by Molmil
Cryo-EM structure of bovine phosphodiesterase 6
分子名称: CYCLIC GUANOSINE MONOPHOSPHATE, MAGNESIUM ION, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma, ...
著者Aplin, C, Cerione, R.A.
登録日2023-10-04
公開日2024-01-17
最終更新日2024-02-07
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Probing the mechanism by which the retinal G protein transducin activates its biological effector PDE6.
J.Biol.Chem., 300, 2023
8U8Z
DownloadVisualize
BU of 8u8z by Molmil
Cryo-EM structure of PsBphP in Pr state, extended DHp
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase
著者Basore, K, Burgie, E.S, Vierstra, D.
登録日2023-09-18
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor.
Nat Commun, 15, 2024
8U65
DownloadVisualize
BU of 8u65 by Molmil
Cryo-EM structure of PsBphP in Pfr state, splayed PSM only
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase
著者Basore, K, Burgie, E.S, Vierstra, D.
登録日2023-09-13
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor.
Nat Commun, 15, 2024
8U63
DownloadVisualize
BU of 8u63 by Molmil
Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers PSM only
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase
著者Basore, K, Burgie, E.S, Vierstra, D.
登録日2023-09-13
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor.
Nat Commun, 15, 2024
8U64
DownloadVisualize
BU of 8u64 by Molmil
Cryo-EM structure of PsBphP in Pfr state, medial PSM only
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase
著者Basore, K, Burgie, E.S, Vierstra, D.
登録日2023-09-13
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor.
Nat Commun, 15, 2024
8U62
DownloadVisualize
BU of 8u62 by Molmil
Cryo-EM structure of PsBphP in Pfr state, Dimer of Dimers FL
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase
著者Basore, K, Burgie, E.S, Vierstra, D.
登録日2023-09-13
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor.
Nat Commun, 15, 2024
8U4X
DownloadVisualize
BU of 8u4x by Molmil
Cryo-EM structure of PsBphP in Pr state
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, histidine kinase
著者Basore, K, Burgie, E.S, Vierstra, D.
登録日2023-09-11
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (2.81 Å)
主引用文献Signaling by a bacterial phytochrome histidine kinase involves a conformational cascade reorganizing the dimeric photoreceptor.
Nat Commun, 15, 2024
8K9O
DownloadVisualize
BU of 8k9o by Molmil
Crystal structure of Cyanobacteriochrome RcaE GAF domain in Pg state
分子名称: PHYCOCYANOBILIN, histidine kinase
著者Nagae, T, Hirose, Y, Mishima, M.
登録日2023-08-01
公開日2024-05-15
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Green/red light-sensing mechanism in the chromatic acclimation photosensor.
Sci Adv, 10, 2024
8JRC
DownloadVisualize
BU of 8jrc by Molmil
Crystal structure of the GAF domain of the transcriptional activator NifA
分子名称: Nif-specific regulatory protein
著者Zeng, Y, Guo, L, Li, D.F.
登録日2023-06-16
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the GAF domain of the transcriptional activator NifA
To Be Published
8SGK
DownloadVisualize
BU of 8sgk by Molmil
CryoEM structure of Deinococcus radiodurans BphP photosensory module in Pr state
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
著者Li, H, Li, H.
登録日2023-04-12
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献CryoEM structure of Deinococcus radiodurans BphP photosensory module in Pr state
To Be Published
8ISJ
DownloadVisualize
BU of 8isj by Molmil
Pr conformer of Arabidopsis thaliana phytochrome A - AtphyA-Pr
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome A
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
8ISI
DownloadVisualize
BU of 8isi by Molmil
Photochromobilin-free form of Arabidopsis thaliana phytochrome A - apo-AtphyA
分子名称: Phytochrome A
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.77 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
8ISK
DownloadVisualize
BU of 8isk by Molmil
Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
8CO5
DownloadVisualize
BU of 8co5 by Molmil
The surface-engineered photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form with parallel dimer formation
分子名称: 3-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Bacteriophytochrome protein, MAGNESIUM ION
著者Schmidt, A, Sauthof, L, Krauss, N, Scheerer, P.
登録日2023-02-27
公開日2024-03-06
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Crystal structures of a bacterial phytochrome exhibiting a group-subgroup relationship reveal pronounced flexibility of the photosensory core module in the Pr state
To Be Published
8IFF
DownloadVisualize
BU of 8iff by Molmil
Cryo-EM structure of Arabidopsis phytochrome A.
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome A
著者Ma, L, Zhou, C, Wang, J, Guan, Z, Yin, P.
登録日2023-02-17
公開日2023-08-02
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Plant phytochrome A in the Pr state assembles as an asymmetric dimer.
Cell Res., 33, 2023
8C3I
DownloadVisualize
BU of 8c3i by Molmil
Dark state of PAS-GAF fragment from Deinococcus radiodurans phytochrome
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
著者Madan Kumar, S, Sebastian, W.
登録日2022-12-24
公開日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Dark state of PAS-GAF fragment from Deinococcus radiodurans phytochrome
To Be Published
8F5Z
DownloadVisualize
BU of 8f5z by Molmil
Composite map of CryoEM structure of Arabidopsis thaliana phytochrome A
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome A
著者Li, H, Li, H.
登録日2022-11-15
公開日2023-06-28
最終更新日2023-08-02
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The structure of Arabidopsis phytochrome A reveals topological and functional diversification among the plant photoreceptor isoforms.
Nat.Plants, 9, 2023
8BOR
DownloadVisualize
BU of 8bor by Molmil
Photosensory module from DrBphP without PHY tongue
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
著者Kurttila, M, Takala, H, Ihalainen, J.A.
登録日2022-11-15
公開日2023-06-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The interconnecting hairpin extension "arm": An essential allosteric element of phytochrome activity.
Structure, 31, 2023
8AVV
DownloadVisualize
BU of 8avv by Molmil
Cryo-EM structure of DrBphP photosensory module in Pr state
分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome,Response regulator
著者Wahlgren, W.Y, Takala, H, Westenhoff, S.
登録日2022-08-27
公開日2022-12-21
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural mechanism of signal transduction in a phytochrome histidine kinase.
Nat Commun, 13, 2022

225158

件を2024-09-18に公開中

PDB statisticsPDBj update infoContact PDBjnumon