6H22
Crystal structure of Mdm2 bound to a stapled peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-08-06 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.416, 72.186, 45.124 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.062 - 2.006 |
R-factor | 0.2122 |
Rwork | 0.211 |
R-free | 0.23840 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.882 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 72.190 | 72.190 | 2.110 |
High resolution limit [Å] | 2.000 | 6.340 | 2.010 |
Rmerge | 0.111 | 0.037 | 0.732 |
Rmeas | 0.123 | 0.042 | 0.811 |
Rpim | 0.053 | 0.019 | 0.344 |
Number of reflections | 14472 | 548 | 1898 |
<I/σ(I)> | 9.4 | ||
Completeness [%] | 98.6 | 99.9 | 90.9 |
Redundancy | 5.4 | 4.6 | 5.4 |
CC(1/2) | 0.998 | 0.999 | 0.908 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292.15 | 1.1 M sodium malonate dibasic, 0.1 M HEPES pH 7.0, 0.5% v/v Jeffamine ED-2003 |