... STRUCTURE OF D(*G-G-G-G-C-C-C-C). A MODEL FOR POLY(D*G)(DOT)POLY(D*C) M.J.MCCALL,T.BROWN,O.KENNARD ... ,D.P.BARTEL DisplayDownload 1qxuTHE INTERACTION BETWEEN MRNA AND TRNA (MODEL C) C.LIU,X.WANG,X.PAN,X.ZHANG DisplayDownload 1qxvTHE INTERACTION BETWEEN MRNA ...

... where H is (alpha) helix, E is (beta) strand, and C is coil (all others). CN means predicted contact numbers encoded in 2 ... structures where H is (alpha) helix, E is (beta) strand, and C is coil (all others). - CN means predicted contact numbers encoded in 2 ...

... A, Samsonov SA, Slusarz R, Zieba K, Sieradzan AK, Czaplewski C, Kobayashi S, Miyakawa Y, Kiyota Y, Takeda-Shitaka M, Olechnovic ... S, Ekiert DC, Erlandsen BS, Freddolino PL, Gilzer D, Greening C, Grimes JM, Grinter R, Gurusaran M, Hartmann MD, Hitchman CJ, ...

... Yamada, Shinichiro Tsuchiya, Kiyoko F.Aoki-Kinoshita, Jeffrey C.Hoch, Genji Kurisu, Sameer Velankar, Stephen K.Burley, ... Yao, Toshimichi Fujiwara, Genji Kurusu, Eldon L. Ulrich, Jeffrey C. Hoch, John L. Markley - Structural Bioinformatics. Methods in ...

... keywords.pdbx_keywords, cell.length_a, cell.length_b, cell.length_c, cell.angle_alpha, cell.angle_beta, cell.angle_gamma, sum ... keywords.pdbx_keywords, cell.length_a, cell.length_b, cell.length_c, cell.angle_alpha, cell.angle_beta, cell.angle_gamma [Retrieve ...

... _atom_id _atom_site.pdbx_PDB_model_num ... HETATM 27655 C C1 . NAG Y 6 . ? 191.103 162.375 206 ... 1.00 47.28 ? 1301 NAG A C1 1 HETATM 27656 C C2 . NAG Y 6 . ? 191.067 161.665 ... 1.00 47.22 ? 1301 NAG A C2 1 HETATM 27657 C C3 . NAG Y 6 . ? 190.138 160.434 ...

... carboxyl groups, amino groups and side chain linked carbons (C-alpha) follow a standard atom nomenclature. This allows ... will have standardized atom names and backbone / N- and C- terminal annotation. Questions or feedback? Contact deposit-help@mail. ...

... modification date before (optional) - mdate_after: filter by modification date after (optional) - c_year: filter by citation year (optional) - chain_type_0: filter by chain ...

... carboxyl groups, amino groups and side chain linked carbons (C-alpha) follow a standard atom nomenclature. This will allow ... will have standardized atom names and backbone / N- and C- terminal annotation. We encourage developers of software packages for ...

... for benchmarking Trewhella, J., Vachette, P., Bierma, J., Blanchet, C., Brookes, E., Chakravarthy, S., Chatzimagas, L., Cleveland, T. E ... ., Hub, J. S., Hura, G. L., Irving, T. C., Jeffries, C. M., Jeong, C., Kirby, N., Krueger, S., Martel, A., Matsui, T., ...

... The Number of Equivalent Residues ( NER ) is a reward for C-alpha atoms that can be superimposed in space 2. A sequence similarity ... programming algorithm. Comput Appl Biosci 13, 387-96. 2. Orengo, C.A. and Thornton, J.M. (2005) Protein families and their ...

... sequence similarities (Q35 and the Lysine residues at the C-terminus). These residue, along with the unaligned segment 'SRPVTHSTGSDQVELKDSGTSGV ... , followed by a transmembrane helix, and, at the C-terminus, a signaling domain. The signaling domain binds to ...

... make copies of the Software only for personal use; and (c) distribute the Software only in the form originally furnished by ... assignment in the PDB data. [1] W. Kabsch and C. Sander, Dictionary of protein secondary structure: pattern recognition of hydrogen ...

... M Sayed, T Sewell, HW Dirr. Tertiary interactions stabilise the C-terminal region of human glutathione transferase A1-1: a crystallographic ... A Loquet, NG Sgourakis, R Gupta, K Giller, D Riedel, C Goosmann, C Griesinger, M Kolbe, D Baker, S Becker, A Lange ( ...

... . J Mol Biol 1979;128(1):49-79. 3.Zemla A, Venclovas C, Reinhardt A, Fidelis K, Hubbard TJ. Numerical criteria for the evaluation of ... . 7.Press WH, Teukolsky SA, Vettering WT, Flannery BP. Numerical Recipes in C. Cambridge: Cambridge Univ. Press; 1992.

... chimera for interactive visualization of large molecular assemblies. Goddard, T.D., Huang, C.C., Ferrin, T.E. Structure 13: 473-482 (2005) [doi:10.1016/j ...

... Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. ... D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar ( ...

... . J Mol Biol 1979;128(1):49-79. 3.Zemla A, Venclovas C, Reinhardt A, Fidelis K, Hubbard TJ. Numerical criteria for the evaluation of ... . 7.Press WH, Teukolsky SA, Vettering WT, Flannery BP. Numerical Recipes in C. Cambridge: Cambridge Univ. Press; 1992.

... prevents PDB entries with e-values0.01 from being included. c. Min coverage of original input (default 50%). This parameter ... PDB entries with e-values0.01 from being included. 4. c. Min coverage of original input (default 50%). This parameter determines ...

... _model_num> C ... The same information in the PDBML ... :atom_record id= "2"> ATOM 1 A A 1 1 ? . VAL VAL C CA CA 103.062 38.513 -2.159 1.00 47.99 ...

... Bank Archive Sameer Velankar, Stephen K Burley, Genji Kurisu, Jeffrey C Hoch, John L Markley Methods in molecular biology 2305: 3-21 ... S.E., Graziano, V., Kycia, H., Studier, B., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics ( ...

... Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. ... D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar ( ...

... where the catalytic sites of representative enzyme proteins are annotated by C.T.Porter, G.J.Bartlett, and J.M.Thornton (http:// ... of representative enzyme proteins are manually annotated by G.J.Bartlett, C.T.Porter, N. Borkakoti, and J. M. Thornton (http ...

... , DOI:10.1093/jb/mvab133 - Tomitake Tsukihara, "Crystallographic studies of cytochrome c and cytochrome c oxidase", The Journal of Biochemistry, Volume 171, Issue 1, January 2022 ...

... : 10.1093/nar/gky949 - (3) Wenqing Xu, Sameer Velankar, Ardan Patwardhan, Jeffrey C. Hoch, Stephen K. Burley, Genji Kurisu (2023) Announcing launch of Protein Data ...