... CAFFREY DisplayDownload 1igeA MODEL OF THE FC OF IMMUNOGLOBULIN E E.A.PADLAN,D.R.DAVIES DisplayDownload 1igkMODELED COMPLEX BETWEEN ... MODEL OF THE HUMAN CHOLECYSTOKININ-1 RECEPTOR C.GIRAGOSSIAN,E.E.SUGG,J.R.SZEWCZYK,D.F.MIERKE DisplayDownload 1pb4THEORETICAL ...

... proteins. - Finding polymer entities assigned to multiple species (i.e., chimeric proteins) - Retrieve PDB chain sequences matching to the Pfam ... ** This query may take a long time to finish. SELECT e.pdbid,e.entity_id, COUNT(DISTINCT t.tax_id) AS n, ARRAY ...

... 3969 14 W : E 10 63 27 : E 38 : 5945 15 A : E 6 87 7 : E 32 : 4798 16 V : E 5 91 4 : E 47 : 6656 ... site. [References] The following articles are all open-access (i.e., freely downloadable). 1. CRNPRED: Highly accurate prediction of one-dimensional ...

... information such as related ID, perform a keywords search. e.g.) entering1smdinto 'PDB ID' --The summary page of1smdstructure ... structures into the text box next to 'Compound Information' (e.g. ATP). [Title] Search for structures by structure title ...

... new policies affecting biomolecular NMR depositions Markley, J.L., Ulrich, E.L., Berman, H.M., Henrick, K., Nakamura, H., Akutsu ... R., Shimizu, Y., Swaminathan, J., Velankar, S., Ory, J., E. Ulrich, E.L., Vranken, W., Westbrook, J.D., Yamashita, R., Yang, H ...

... Webb BM, Westbrook JD, Goddard TD, Hanke CA, Graziadei A, Peisach E, Zalevsky A, Sagendorf J, Tangmunarunkit H, Voinea S, Sekharan M, ... Yu J, Bonvin AAMJJ, DiMaio F, Hummer G, Meiler J, Tajkhorshid E, Ferrin TE, Lawson CL, Leitner A, Rappsilber J, Seidel CAM, ...

... date before (optional) OutputJSON encoded object containing meta data (e.g. number of results) and a list of results (if ... seperated list of entry IDs - schemaName: schema to select from (e.g. pdb, cc) - tables: comma seperated list of tables/categories ...

... original chains from the atomic coordinate file will be retained (e.g., A) - Assign unique chain ID (atom_site ... assembly files for graphical viewing, check if your visualization software (e.g., PyMol, ChimeraX, etc.) supports instantiation of assemblies ...

... original chains from the atomic coordinate file will be retained (e.g., A) - Assign unique chain ID (atom_site ... assembly files for graphical viewing, check if your visualization software (e.g., PyMol, ChimeraX, etc.) supports instantiation of assemblies ...

... you will get a PDB entry list including either keyword. e.g.: Searching for entries including either "erythrocyte" and "leukocyte" ... keywords, add the ! or - operator before such keywords. e.g.: Searching entries including the "hydrolase" keyword but not ...

... Keegan RM, Topf M, Rigden DJ, Miao Z, Westhof E. Assessment of three-dimensional RNA structure prediction in CASP15. ... Kryshtafovych A, Montelione GT, Rigden DJ, Mesdaghi S, Karaca E, Moult J. Breaking the conformational ensemble barrier: Ensemble structure ...

... Sequence Navigator has options for clustering the output using the BLAST E-value. This can be useful when the number of sequence ... 0.00001. You can increase the number of clusters (i.e., decrease the E-value cutoff) by clicking the+button. To decrease the ...

... Crossett, B., Duff, A. P., Franke, D., Gabel, F., Gillilan, R. E., Graewert, M., Grishaev, A., Guss, J. M., Hammel, M., Hopkins, J ... , D., Teixeira, S., Thureau, A., Weiss, T. M., Whitten, A. E., Wood, K. & Zuo, X. (2022) Acta Cryst. D78: 1315-1336 doi ...

... examples. [Back to Questions] 4-3) jV: What are the system requirements, e.g. operating system, to use jV? A) Any OS such as Windows ... want to change my PDB entry but do not know the contact e-mail address. What can I do? A) Please contact the PDBj ...

... here SELECT b.pdbid, e.pdbx_strand_id FROM entity_poly e LEFT JOIN brief_summary b ON e.pdbid=b.pdbid WHERE e.pdbx_seq_one_letter ...

... column contains the sequence identity of aligned residue pairs (i.e., gaps are not included). - The Domain column lists the ... involved in RNA binding, but more experimental evidence (i.e., mutational analysis, along with direct structural evidence) is ...

... , modification vs common sugars tags, chemical types (e.g., isomers), structure feature types (e.g., anomers), and symbol identifiers (e.g., IUPAC condensed symbols). The chemical names ...

... get an answer from PDBj for the technical and scientific questions. (e.g. I can not fill the data in this inputting style, ... Entry and Data If you have received at least an e-mail related with your entry processing from wwPDB annotator, please send ...

... or temperature Since the potential function is artificial (i.e., the parameters in the potential function are not determined ... lowest-frequency normal modes. GIF animation is also presented. e) Displacement vectors exhibited on the viewers, jV (PDBj) ...

... retrieved. However, an internal parameter prevents PDB entries with e-values0.01 from being included. c. Min coverage of original ... retrieved. However, an internal parameter prevents PDB entries with e-values0.01 from being included. 4. c. Min coverage ...

... JSON decoder, the data will be accessible as native Python objects (see e.g. line 19 and 20). Finally the script outputs the total ... decoder, the data will be accessible as native Perl objects (see e.g. line 13 and 14). Finally the script outputs the total ...

... of it includes similar sequences to the specified criteria with the BLAST E value is under 0.000001. If any structures were hit, the ... directly. In the former case, it is also required to input e-mail address at the text box ofaddress. When the result is ...

... chains) - chain ids with more than 2 characters - complex sheet records(e.g. a large beta barrel structure) - large B factor (≥ 1000) ... able to properly load the large entries. Furthermore, additional hardware (e.g. > 6GB of RAM) or software (64-bits version ...

... IDs must be those that appear in PDB-format files (i.e., auth_asym_id of mmCIF or PDBML). When specifying multiple ... correspondence between the query and the template ligand binding site (i.e., the structural alignment) is also shown as a table. Alignment ...

... as follows: (1) ftp.pdbj.org wwPDB common area for /pub (i.e., pdb and emdb) only (same as wwPDB's and RCSB's core ... that obtain data other than the core wwPDB data from (1) (i.e. other than /pub), please switch over to our new data archive (data ...